Rw5G025380
MYB Family

Transcription factor

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
36082730 .. 36100515
17786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G025380.1

Sequence Viewer

Length: 1482 bp
ATGGAGGGCAATAATATGGGCCTGAAGAAAGGTCCATGGACGGCGGTGGAGGATCGAATTCTGATGGAGTACCTGAGCAAACAGGGCGAAGGGAACTGGAATTCGGTGCAATGGAATTCCGGGCTCAAGCGTTGCGGCAAGAGTTGCAGGCTCCGGTGGGCTAATCATCTCCGCCCTAATTTGAAGAAAGGTGCATTCACACCCGAGGAAGAGAGACTCATTCTTGAACTCCACGCCAAATACGGCAACAAATGGGCACATGGCCTCTCAGATAATGAAATAAAGAATTATTGGAACACAAGGGTGAAGAGGCGACAACGTCAAGGCCTACCTCTATATCCTCATGATATTAAACAATCCCAACAACAATCTCATTCCCAGTCACAACCAACCACTTTAACCATTCCCACAGGACTAACACAGTCCAGCACAAGCACCGGAATGCCACCCACAGGCCAAACTTTTTCCTTCCAAGTTCAAAATTCATCATCATCGCAGACTCATCAACTCCCTCTCATAGCCCCTACTGACCCATATCACTCTGTCCCCTCCTCTCCCAAATCCGCCCTCAGTCATTCCCTTCCTCTAATATTTGATCACCCCACCGACTCTTCCTTCACATTCCACCGCCCCACTCCCATCCTCGGAACCCCATTGCGGTACAAAAGGCACCCCGACAGCCGTGACATCTCCCCTCCCGTTTCCCCAAGCCTACAACGAAGCACCTCTATTTTACGAGCCAGCTCCATGCCCGACATATCTTACAATCAGCATATTGCAGCAGGAAACATGTCCATGCCTGACATGTCCTCTTTTCAGTTTCAGCCAACACGTCATTTCAATGGTTCGTTGCCACCATTGCCGCGTTCCACCAGCGTCCCGTTTGATTTTGGGGACAGTACCAGGTCACTTTATTCGGTGAAGTCATCAGAGCTTCCTTCAAGCCGAGTATCCCAAACACAGTCACAGTCTGATCAGATCACCAATGATAACAAGCTAAATGTGGTGGCTGCCGCTAGTGAGACTCATTACAGTAATGTGTTGGAAGAGTTGTTACGAGAAGCTGAGGCATTGGCTTCTGTTGCGACTCCAAGGAAAGCATCAATTGGTCTAGGGGGACGTTCTTTTGAAGACAAACATGTTTTGGATGGTTATGGCCGTTGGCTGCAATCTACAGGTTCCACAAATAACTCTTTATCAGATATGAAGTCAATCCAGGATCATCATGACCACATGAATAATTCCATGCCTGAAGACTTGTCGAAGCTGTTCAGTTTTATTCCTTCAACCGAGCCGGTCTCCGATTGGTACAGTACTGATAGTGGGGAATTCTCCAATGGCGGCCAATCTTCTGGAATAACCGAGGCTAGTTTTGAGTTTGACATGCAGCAACATATGGCTTCAATGTTCCCTGTTGTTGCCTCATCAACAGACCATGACAGAGTTCCTAACAGTTGGGATAACTTGCCAGGAATGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

493

Amino Acids

54.85

Weight (kDa)

6.86

Isoelectric Point (pI)

65.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 10 - 57 3.6e-12 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 13 - 72 6e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 63 - 100 5.5e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 669
AccII CGCG 1 cut(s) 865
AciI CCGC 9 cut(s) 44, 135, 172, 564, 628, 658, 863, 1014, 1341
AclWI GGATC 2 cut(s) 60, 1227
AcoI YGGCCR 2 cut(s) 1156, 1342
AcsI RAATTY 5 cut(s) 57, 100, 115, 481, 1328
AcuI CTGAAG 2 cut(s) 44, 1272
AfaI GTAC 5 cut(s) 71, 662, 901, 1310, 1315
AfiI CCNNNNNNNGG 3 cut(s) 452, 644, 657
AflIII ACRYGT 4 cut(s) 789, 804, 830, 1138
AgsI TTSAA 8 cut(s) 184, 227, 479, 841, 942, 1130, 1287, 1404
AjiI CACGTC 1 cut(s) 833
AjnI CCWGG 3 cut(s) 902, 1215, 1468
AleI CACNNNNGTG 1 cut(s) 302
AluBI AGCT 5 cut(s) 744, 934, 997, 1064, 1267
AluI AGCT 5 cut(s) 744, 934, 997, 1064, 1267
Alw26I GTCTC 3 cut(s) 208, 1016, 1303
AlwI GGATC 2 cut(s) 60, 1227
Ama87I CYCGRG 1 cut(s) 203
AoxI GGCC 6 cut(s) 19, 262, 325, 454, 1156, 1342
ApeKI GCWGC 4 cut(s) 779, 1010, 1165, 1387
ApoI RAATTY 5 cut(s) 57, 100, 115, 481, 1328
Asp700I GAANNNNTTC 1 cut(s) 1268
AspS9I GGNCC 2 cut(s) 19, 32
AsuC2I CCSGG 1 cut(s) 121
AsuHPI GGTGA 4 cut(s) 316, 590, 931, 973
AvaI CYCGRG 1 cut(s) 203
AvaII GGWCC 1 cut(s) 32
BaeGI GKGCMC 1 cut(s) 259
BanI GGYRCC 1 cut(s) 669
BanII GRGCYC 1 cut(s) 126
BarI GAAGNNNNNNTAC 2 cut(s) 1038, 1070
BbsI GAAGAC 2 cut(s) 1137, 1260
BbvCI CCTCAGC 1 cut(s) 1065
BbvI GCAGC 4 cut(s) 791, 997, 1152, 1399
BccI CCATC 3 cut(s) 58, 647, 1142
BceAI ACGGC 4 cut(s) 57, 259, 666, 1143
BciT130I CCWGG 3 cut(s) 904, 1217, 1470
BciVI GTATCC 1 cut(s) 961
BclI TGATCA 2 cut(s) 595, 973
BcnI CCSGG 1 cut(s) 121
BcoDI GTCTC 3 cut(s) 208, 1016, 1303
BfaI CTAG 3 cut(s) 1017, 1112, 1368
BfmI CTRYAG 1 cut(s) 1173
BfuI GTATCC 1 cut(s) 961
BisI GCNGC 8 cut(s) 136, 780, 863, 1011, 1014, 1166, 1342, 1388
BlsI GCNGC 8 cut(s) 137, 781, 864, 1012, 1015, 1167, 1343, 1389
BmcAI AGTACT 1 cut(s) 1315
Bme1390I CCNGG 4 cut(s) 121, 904, 1217, 1470
Bme18I GGWCC 1 cut(s) 32
BmeT110I CYCGRG 1 cut(s) 203
BmgBI CACGTC 1 cut(s) 833
BmgT120I GGNCC 2 cut(s) 19, 32
BmiI GGNNCC 4 cut(s) 152, 649, 671, 1180
BmrFI CCNGG 4 cut(s) 121, 904, 1217, 1470
BmrI ACTGGG 1 cut(s) 373
BmsI GCATC 1 cut(s) 1109
BmuI ACTGGG 1 cut(s) 373
BpiI GAAGAC 2 cut(s) 1137, 1260
BplI GAGNNNNNCTC 2 cut(s) 1283, 1315
Bpu10I CCTNAGC 2 cut(s) 74, 1065
BpuEI CTTGAG 1 cut(s) 110
BpuMI CCSGG 1 cut(s) 121
BsaI GGTCTC 1 cut(s) 1303
BsaJI CCNNGG 5 cut(s) 35, 204, 643, 1091, 1362
BsaWI WCCGGW 2 cut(s) 153, 437
Bsc4I CCNNNNNNNGG 3 cut(s) 452, 644, 657
Bse118I RCCGGY 1 cut(s) 1294
Bse1I ACTGG 2 cut(s) 101, 379
Bse3DI GCAATG 3 cut(s) 116, 653, 857
BseBI CCWGG 3 cut(s) 904, 1217, 1470
BseDI CCNNGG 5 cut(s) 35, 204, 643, 1091, 1362
BseGI GGATG 2 cut(s) 639, 1153
BseLI CCNNNNNNNGG 3 cut(s) 452, 644, 657
BseMI GCAATG 3 cut(s) 116, 653, 857
BseMII CTCAG 4 cut(s) 65, 282, 583, 1056
BseNI ACTGG 2 cut(s) 101, 379
BseRI GAGGAG 1 cut(s) 541
BseSI GKGCMC 1 cut(s) 259
BseXI GCAGC 4 cut(s) 791, 997, 1152, 1399
Bsh1236I CGCG 1 cut(s) 865
BshFI GGCC 6 cut(s) 21, 264, 327, 456, 1158, 1344
BshNI GGYRCC 1 cut(s) 669
BsiHKCI CYCGRG 1 cut(s) 203
BsiSI CCGG 4 cut(s) 120, 154, 438, 1295
BslFI GGGAC 4 cut(s) 530, 863, 908, 1131
BslI CCNNNNNNNGG 3 cut(s) 452, 644, 657
BsmAI GTCTC 3 cut(s) 208, 1016, 1303
BsmFI GGGAC 4 cut(s) 530, 863, 908, 1131
BsmI GAATGC 2 cut(s) 194, 447
BsnI GGCC 6 cut(s) 21, 264, 327, 456, 1158, 1344
Bso31I GGTCTC 1 cut(s) 1303
BsoBI CYCGRG 1 cut(s) 203
Bsp1286I GDGCHC 2 cut(s) 126, 259
Bsp143I GATC 5 cut(s) 52, 595, 973, 978, 1219
Bsp19I CCATGG 1 cut(s) 35
BspACI CCGC 9 cut(s) 44, 135, 172, 564, 628, 658, 863, 1014, 1341
BspANI GGCC 6 cut(s) 21, 264, 327, 456, 1158, 1344
BspCNI CTCAG 4 cut(s) 66, 281, 582, 1057
BspFNI CGCG 1 cut(s) 865
BspHI TCATGA 2 cut(s) 343, 1225
BspLI GGNNCC 4 cut(s) 152, 649, 671, 1180
BspPI GGATC 2 cut(s) 60, 1227
BspT107I GGYRCC 1 cut(s) 669
BspTNI GGTCTC 1 cut(s) 1303
BsrDI GCAATG 3 cut(s) 116, 653, 857
BsrFI RCCGGY 1 cut(s) 1294
BsrI ACTGG 2 cut(s) 101, 379
BssAI RCCGGY 1 cut(s) 1294
BssECI CCNNGG 5 cut(s) 35, 204, 643, 1091, 1362
BssMI GATC 5 cut(s) 52, 595, 973, 978, 1219
BssT1I CCWWGG 2 cut(s) 35, 1091
Bst2UI CCWGG 3 cut(s) 904, 1217, 1470
Bst4CI ACNGT 7 cut(s) 423, 899, 963, 969, 1034, 1313, 1454
Bst6I CTCTTC 4 cut(s) 204, 302, 616, 1041
BstAPI GCANNNNNTGC 1 cut(s) 144
BstC8I GCNNGC 2 cut(s) 149, 742
BstDEI CTNAG 4 cut(s) 74, 268, 569, 1065
BstDSI CCRYGG 1 cut(s) 35
BstF5I GGATG 2 cut(s) 639, 1153
BstFNI CGCG 1 cut(s) 865
BstKTI GATC 5 cut(s) 55, 598, 976, 981, 1222
BstMAI GTCTC 3 cut(s) 208, 1016, 1303
BstMBI GATC 5 cut(s) 52, 595, 973, 978, 1219
BstMWI GCNNNNNNNGC 4 cut(s) 84, 144, 859, 1082
BstNI CCWGG 3 cut(s) 904, 1217, 1470
BstNSI RCATGY 4 cut(s) 793, 808, 1142, 1387
BstSCI CCNGG 4 cut(s) 119, 902, 1215, 1468
BstSFI CTRYAG 1 cut(s) 1173
BstSLI GKGCMC 1 cut(s) 259
BstUI CGCG 1 cut(s) 865
BstV1I GCAGC 4 cut(s) 791, 997, 1152, 1399
BstV2I GAAGAC 2 cut(s) 1137, 1260
BstXI CCANNNNNNTGG 1 cut(s) 1352
BsuI GTATCC 1 cut(s) 961
BsuRI GGCC 6 cut(s) 21, 264, 327, 456, 1158, 1344
BtgI CCRYGG 1 cut(s) 35
BtgZI GCGATG 1 cut(s) 477
BtrI CACGTC 1 cut(s) 833
BtsCI GGATG 2 cut(s) 639, 1153
Cac8I GCNNGC 2 cut(s) 149, 742
CciI TCATGA 2 cut(s) 343, 1225
Cfr10I RCCGGY 1 cut(s) 1294
Cfr13I GGNCC 2 cut(s) 19, 32
CseI GACGC 1 cut(s) 865
CsiI ACCWGGT 1 cut(s) 902
Csp6I GTAC 5 cut(s) 70, 661, 900, 1309, 1314
CviQI GTAC 5 cut(s) 70, 661, 900, 1309, 1314
DdeI CTNAG 4 cut(s) 74, 268, 569, 1065
DpnI GATC 5 cut(s) 54, 597, 975, 980, 1221
DpnII GATC 5 cut(s) 52, 595, 973, 978, 1219
EaeI YGGCCR 2 cut(s) 1156, 1342
Eam1104I CTCTTC 4 cut(s) 204, 302, 616, 1041
EarI CTCTTC 4 cut(s) 204, 302, 616, 1041
EciI GGCGGA 2 cut(s) 161, 553
Eco130I CCWWGG 2 cut(s) 35, 1091
Eco147I AGGCCT 1 cut(s) 327
Eco24I GRGCYC 1 cut(s) 126
Eco31I GGTCTC 1 cut(s) 1303
Eco47I GGWCC 1 cut(s) 32
Eco57I CTGAAG 2 cut(s) 44, 1272
Eco88I CYCGRG 1 cut(s) 203
EcoRI GAATTC 4 cut(s) 57, 100, 115, 1328
EcoRII CCWGG 3 cut(s) 902, 1215, 1468
EcoT14I CCWWGG 2 cut(s) 35, 1091
EcoT38I GRGCYC 1 cut(s) 126
ErhI CCWWGG 2 cut(s) 35, 1091
FaqI GGGAC 4 cut(s) 530, 863, 908, 1131
FauNDI CATATG 1 cut(s) 1395
FbaI TGATCA 2 cut(s) 595, 973
Fnu4HI GCNGC 8 cut(s) 136, 780, 863, 1011, 1014, 1166, 1342, 1388
FokI GGATG 2 cut(s) 626, 1160
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 8 cut(s) 136, 780, 863, 1011, 1014, 1166, 1342, 1388
FspBI CTAG 3 cut(s) 1017, 1112, 1368
GluI GCNGC 8 cut(s) 136, 780, 863, 1011, 1014, 1166, 1342, 1388
HaeIII GGCC 6 cut(s) 21, 264, 327, 456, 1158, 1344
HapII CCGG 4 cut(s) 120, 154, 438, 1295
HgaI GACGC 1 cut(s) 865
HinfI GANTC 5 cut(s) 216, 499, 608, 1024, 1087
HpaII CCGG 4 cut(s) 120, 154, 438, 1295
HphI GGTGA 4 cut(s) 316, 590, 931, 973
Hpy188I TCNGA 8 cut(s) 63, 271, 647, 931, 973, 978, 1201, 1303
Hpy188III TCNNGA 4 cut(s) 224, 344, 1226, 1353
HpyAV CCTTC 6 cut(s) 83, 478, 590, 625, 948, 1293
HpyCH4III ACNGT 7 cut(s) 423, 899, 963, 969, 1034, 1313, 1454
HpyCH4IV ACGT 3 cut(s) 319, 832, 1120
HpyCH4V TGCA 6 cut(s) 109, 147, 194, 779, 1168, 1387
HpyF10VI GCNNNNNNNGC 4 cut(s) 84, 144, 859, 1082
HpyF3I CTNAG 4 cut(s) 74, 268, 569, 1065
HpySE526I ACGT 3 cut(s) 319, 832, 1120
Ksp22I TGATCA 2 cut(s) 595, 973
Kzo9I GATC 5 cut(s) 52, 595, 973, 978, 1219
LmnI GCTCC 2 cut(s) 156, 749
Lsp1109I GCAGC 4 cut(s) 791, 997, 1152, 1399
LweI GCATC 1 cut(s) 1109
MabI ACCWGGT 1 cut(s) 902
MaeI CTAG 3 cut(s) 1017, 1112, 1368
MaeII ACGT 3 cut(s) 319, 832, 1120
MaeIII GTNAC 5 cut(s) 381, 683, 906, 963, 1053
MalI GATC 5 cut(s) 54, 597, 975, 980, 1221
MboI GATC 5 cut(s) 52, 595, 973, 978, 1219
MboII GAAGA 9 cut(s) 37, 196, 221, 319, 603, 1058, 1142, 1265, 1341
MfeI CAATTG 1 cut(s) 1104
MhlI GDGCHC 2 cut(s) 126, 259
MluCI AATT 9 cut(s) 57, 100, 115, 178, 286, 481, 1104, 1240, 1328
MlyI GAGTC 5 cut(s) 210, 493, 602, 1018, 1081
MmeI TCCRAC 1 cut(s) 1023
MroXI GAANNNNTTC 1 cut(s) 1268
MseI TTAA 2 cut(s) 351, 398
MslI CAYNNNNRTG 4 cut(s) 302, 440, 794, 840
MspI CCGG 4 cut(s) 120, 154, 438, 1295
MspR9I CCNGG 4 cut(s) 121, 904, 1217, 1470
MunI CAATTG 1 cut(s) 1104
Mva1269I GAATGC 2 cut(s) 194, 447
MvaI CCWGG 3 cut(s) 904, 1217, 1470
MvnI CGCG 1 cut(s) 865
MwoI GCNNNNNNNGC 4 cut(s) 84, 144, 859, 1082
NciI CCSGG 1 cut(s) 121
NcoI CCATGG 1 cut(s) 35
NdeI CATATG 1 cut(s) 1395
NdeII GATC 5 cut(s) 52, 595, 973, 978, 1219
NlaIV GGNNCC 4 cut(s) 152, 649, 671, 1180
NmeAIII GCCGAG 1 cut(s) 971
NmuCI GTSAC 4 cut(s) 381, 683, 906, 963
NspI RCATGY 4 cut(s) 793, 808, 1142, 1387
OliI CACNNNNGTG 1 cut(s) 302
PagI TCATGA 2 cut(s) 343, 1225
PceI AGGCCT 1 cut(s) 327
PciI ACATGT 3 cut(s) 789, 804, 1138
PctI GAATGC 2 cut(s) 194, 447
PdmI GAANNNNTTC 1 cut(s) 1268
PflFI GACNNNGTC 1 cut(s) 318
PfoI TCCNGGA 1 cut(s) 1215
PkrI GCNGC 8 cut(s) 137, 781, 864, 1012, 1015, 1167, 1343, 1389
PleI GAGTC 5 cut(s) 210, 493, 602, 1018, 1081
PpsI GAGTC 5 cut(s) 210, 493, 602, 1018, 1081
PscI ACATGT 3 cut(s) 789, 804, 1138
Psp6I CCWGG 3 cut(s) 902, 1215, 1468
PspGI CCWGG 3 cut(s) 902, 1215, 1468
PspN4I GGNNCC 4 cut(s) 152, 649, 671, 1180
PspPI GGNCC 2 cut(s) 19, 32
PsyI GACNNNGTC 1 cut(s) 318
RsaI GTAC 5 cut(s) 71, 662, 901, 1310, 1315
RsaNI GTAC 5 cut(s) 70, 661, 900, 1309, 1314
RseI CAYNNNNRTG 4 cut(s) 302, 440, 794, 840
SaqAI TTAA 2 cut(s) 351, 398
SatI GCNGC 8 cut(s) 136, 780, 863, 1011, 1014, 1166, 1342, 1388
Sau3AI GATC 5 cut(s) 52, 595, 973, 978, 1219
Sau96I GGNCC 2 cut(s) 19, 32
ScaI AGTACT 1 cut(s) 1315
SchI GAGTC 5 cut(s) 210, 493, 602, 1018, 1081
ScrFI CCNGG 4 cut(s) 121, 904, 1217, 1470
SduI GDGCHC 2 cut(s) 126, 259
SexAI ACCWGGT 1 cut(s) 902
SfaNI GCATC 1 cut(s) 1109
SfcI CTRYAG 1 cut(s) 1173
SinI GGWCC 1 cut(s) 32
SmiMI CAYNNNNRTG 4 cut(s) 302, 440, 794, 840
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 9 cut(s) 57, 100, 115, 178, 286, 481, 1104, 1240, 1328
SseBI AGGCCT 1 cut(s) 327
SsiI CCGC 9 cut(s) 44, 135, 172, 564, 628, 658, 863, 1014, 1341
SspI AATATT 1 cut(s) 591
SspMI CTAG 3 cut(s) 1017, 1112, 1368
StuI AGGCCT 1 cut(s) 327
StyD4I CCNGG 4 cut(s) 119, 902, 1215, 1468
StyI CCWWGG 2 cut(s) 35, 1091
TaaI ACNGT 7 cut(s) 423, 899, 963, 969, 1034, 1313, 1454
TaiI ACGT 3 cut(s) 322, 835, 1123
TaqI TCGA 2 cut(s) 55, 1262
TasI AATT 9 cut(s) 57, 100, 115, 178, 286, 481, 1104, 1240, 1328
TatI WGTACW 1 cut(s) 1313
TauI GCSGC 4 cut(s) 138, 865, 1016, 1344
Tru1I TTAA 2 cut(s) 351, 398
Tru9I TTAA 2 cut(s) 351, 398
TseFI GTSAC 4 cut(s) 381, 683, 906, 963
TseI GCWGC 4 cut(s) 779, 1010, 1165, 1387
Tsp45I GTSAC 4 cut(s) 381, 683, 906, 963
TspDTI ATGAA 4 cut(s) 291, 474, 1220, 1250
Tth111I GACNNNGTC 1 cut(s) 318
VpaK11BI GGWCC 1 cut(s) 32
XapI RAATTY 5 cut(s) 57, 100, 115, 481, 1328
XceI RCATGY 4 cut(s) 793, 808, 1142, 1387
XmnI GAANNNNTTC 1 cut(s) 1268
XspI CTAG 3 cut(s) 1017, 1112, 1368
ZrmI AGTACT 1 cut(s) 1315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.