RchiOBHm_Chr5g0040211
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003638
Physical Location & Seq
Forward (+)
34906141 .. 34907665
1525 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31873

Sequence Viewer

Length: 1305 bp
ATGACACACAGCGGTAACTGCATTAATGGCGGTGGTGCTGTTCTCAGCGGCGAGGGAAGGCCTTTGGAGACAAACGGCGGAATGGAGGGCAATAAGGGCCTAAAGAAAGGTCCCTGGACGGCGACGGAGGATCAAATATTGATGGACTACGTGAGGCAACACGGCGAAGGGAACTGGAATTCAGTGCAGCGAAACTCTGGTCTCAACCGTTGTGGCAAGAGTTGCAGGCTCCGATGGGCCAATCATCTCCGCCCTAATTTGAAGAAAGGTTCCTTCACACCAGAGGAAGAGAGGCTCATTCTTGAGCTTCATGCCAAATACGGCAATAAATGGGCACGCATGGCCTCTCAGCTACCCGGACGAACAGATAATGAAATAAAGAATTATTGGAACACAAGGGTGAAGAGGCGACAACGTCAAGGCCTACCTCTATATCCTCATGATATTAAACAATCTCAACAACAATCTCATTCCCAGTCACAACCAACCACTTTAACCATTCCCAAAGGACTAACACAGTCCAGCACAAGCACCGGAATGCCACCCACAGGCCAAAATTTTTCCTTCCAAGTTCAAAATTCATCATCATCGCAGACTCATCAACTCCCTCTCATAGCCCCTACTGACCCATATCACTCTGCCCCCTCCTCTCCCAAATCCGCCCTCAGTCATTCCCTTCCTCTAATATTTGATCACCCCACCGACTCTTCCTTCACATTCCACTGCCCCACTCCCATCCTCGGAGCCCCATTGCGGTACAAAAGGCACCCCGACAGCCGTGCCATCTCCCCTCCGGTTTCCCCAAGCCTACAACGAAGCACCTCTATTTTACGAGCCAGCTCCATGCCCGACATATCTTACAATCAGCATATTGCAGCAGGAAACATGTCCATGCCTGACATGTCCTCTTTTCAGTTTCAGCCAACACGTAATTTCAATGGTTCGTTGCCACCATTGCCGCGTTCCACCAGCGTCCCGTTTGATTTTGGGGACAGTACCAGGTCACTTTATTCGGTGAAGTCATCAGAGCTTCCTTCAAGCCGAGTATCCCAAACACAGTCACAGTCTGATCAGATAACCAATGATAACAAGCTAAATGTGGTGGCTGCCGCTAATGAGACTCATTACAGTAATGTGTTGGAAGAGTTGTTACGAGAAGCTGAGGCATTGGCTTCTGTTGCAACTCCAAGGAAAGCATCAATTGGTCTAGGGGGACGTTCTTTTGAAGACAAACATGTTTTGGATGGTTATGGCCGTTGGCTGCAAGCTACAGGTTCCACAAATAACTCTTTATCAGGTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

434

Amino Acids

47.69

Weight (kDa)

9.63

Isoelectric Point (pI)

63.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 36 - 83 1.1e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 39 - 98 2e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 89 - 132 5.8e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 92 - 136 9.6e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 765
AccII CGCG 1 cut(s) 961
AciI CCGC 9 cut(s) 12, 30, 48, 78, 250, 660, 754, 959, 1110
AclWI GGATC 1 cut(s) 138
AcoI YGGCCR 1 cut(s) 1252
AcsI RAATTY 3 cut(s) 178, 556, 577
AfaI GTAC 2 cut(s) 758, 997
AfiI CCNNNNNNNGG 3 cut(s) 548, 740, 753
AflIII ACRYGT 4 cut(s) 885, 900, 926, 1234
AgsI TTSAA 5 cut(s) 262, 575, 937, 1038, 1226
AjnI CCWGG 2 cut(s) 113, 998
AleI CACNNNNGTG 1 cut(s) 398
AluBI AGCT 7 cut(s) 307, 352, 840, 1030, 1093, 1160, 1268
AluI AGCT 7 cut(s) 307, 352, 840, 1030, 1093, 1160, 1268
Alw26I GTCTC 3 cut(s) 62, 206, 1112
AlwI GGATC 1 cut(s) 138
AoxI GGCC 7 cut(s) 59, 97, 237, 342, 421, 550, 1252
ApeKI GCWGC 4 cut(s) 187, 875, 1106, 1261
ApoI RAATTY 3 cut(s) 178, 556, 577
ArsI GACNNNNNNTTYG 2 cut(s) 184, 216
AseI ATTAAT 1 cut(s) 24
AspS9I GGNCC 3 cut(s) 97, 110, 237
AsuC2I CCSGG 1 cut(s) 357
AsuHPI GGTGA 3 cut(s) 412, 686, 1027
AvaII GGWCC 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 337
BanI GGYRCC 1 cut(s) 765
BanII GRGCYC 1 cut(s) 748
BarI GAAGNNNNNNTAC 2 cut(s) 1134, 1166
BbsI GAAGAC 1 cut(s) 1233
BbvCI CCTCAGC 1 cut(s) 1161
BbvI GCAGC 4 cut(s) 199, 887, 1093, 1248
BccI CCATC 5 cut(s) 136, 228, 743, 791, 1238
BceAI ACGGC 6 cut(s) 91, 135, 178, 337, 762, 1239
BcgI CGANNNNNNTGC 2 cut(s) 761, 795
BciT130I CCWGG 2 cut(s) 115, 1000
BciVI GTATCC 1 cut(s) 1057
BclI TGATCA 2 cut(s) 691, 1069
BcnI CCSGG 1 cut(s) 357
BcoDI GTCTC 3 cut(s) 62, 206, 1112
BfaI CTAG 1 cut(s) 1208
BfmI CTRYAG 1 cut(s) 1269
BfuI GTATCC 1 cut(s) 1057
BisI GCNGC 7 cut(s) 49, 188, 876, 959, 1107, 1110, 1262
BlsI GCNGC 7 cut(s) 50, 189, 877, 960, 1108, 1111, 1263
Bme1390I CCNGG 3 cut(s) 115, 357, 1000
Bme18I GGWCC 1 cut(s) 110
BmgT120I GGNCC 3 cut(s) 97, 110, 237
BmiI GGNNCC 6 cut(s) 112, 230, 271, 745, 767, 1276
BmrFI CCNGG 3 cut(s) 115, 357, 1000
BmrI ACTGGG 1 cut(s) 469
BmsI GCATC 1 cut(s) 1205
BmuI ACTGGG 1 cut(s) 469
BpiI GAAGAC 1 cut(s) 1233
Bpu10I CCTNAGC 1 cut(s) 1161
BpuEI CTTGAG 1 cut(s) 323
BpuMI CCSGG 1 cut(s) 357
BsaAI YACGTR 2 cut(s) 151, 929
BsaI GGTCTC 1 cut(s) 206
BsaJI CCNNGG 3 cut(s) 113, 739, 1187
BsaWI WCCGGW 2 cut(s) 533, 793
Bsc4I CCNNNNNNNGG 3 cut(s) 548, 740, 753
Bse1I ACTGG 2 cut(s) 179, 475
Bse3DI GCAATG 2 cut(s) 749, 953
BseBI CCWGG 2 cut(s) 115, 1000
BseDI CCNNGG 3 cut(s) 113, 739, 1187
BseGI GGATG 2 cut(s) 735, 1249
BseLI CCNNNNNNNGG 3 cut(s) 548, 740, 753
BseMI GCAATG 2 cut(s) 749, 953
BseMII CTCAG 4 cut(s) 58, 362, 679, 1152
BseNI ACTGG 2 cut(s) 179, 475
BseRI GAGGAG 1 cut(s) 637
BseSI GKGCMC 1 cut(s) 337
BseXI GCAGC 4 cut(s) 199, 887, 1093, 1248
BsgI GTGCAG 1 cut(s) 206
Bsh1236I CGCG 1 cut(s) 961
BshFI GGCC 7 cut(s) 61, 99, 239, 344, 423, 552, 1254
BshNI GGYRCC 1 cut(s) 765
BsiSI CCGG 3 cut(s) 357, 534, 794
BslFI GGGAC 4 cut(s) 96, 959, 1004, 1227
BslI CCNNNNNNNGG 3 cut(s) 548, 740, 753
BsmAI GTCTC 3 cut(s) 62, 206, 1112
BsmFI GGGAC 4 cut(s) 96, 959, 1004, 1227
BsmI GAATGC 1 cut(s) 543
BsnI GGCC 7 cut(s) 61, 99, 239, 344, 423, 552, 1254
Bso31I GGTCTC 1 cut(s) 206
Bsp1286I GDGCHC 2 cut(s) 337, 748
Bsp143I GATC 3 cut(s) 130, 691, 1069
BspACI CCGC 9 cut(s) 12, 30, 48, 78, 250, 660, 754, 959, 1110
BspANI GGCC 7 cut(s) 61, 99, 239, 344, 423, 552, 1254
BspCNI CTCAG 4 cut(s) 57, 361, 678, 1153
BspFNI CGCG 1 cut(s) 961
BspHI TCATGA 1 cut(s) 439
BspLI GGNNCC 6 cut(s) 112, 230, 271, 745, 767, 1276
BspPI GGATC 1 cut(s) 138
BspT107I GGYRCC 1 cut(s) 765
BspTNI GGTCTC 1 cut(s) 206
BsrDI GCAATG 2 cut(s) 749, 953
BsrI ACTGG 2 cut(s) 179, 475
BssECI CCNNGG 3 cut(s) 113, 739, 1187
BssMI GATC 3 cut(s) 130, 691, 1069
BssT1I CCWWGG 1 cut(s) 1187
Bst2UI CCWGG 2 cut(s) 115, 1000
Bst4CI ACNGT 6 cut(s) 209, 519, 995, 1059, 1065, 1130
Bst6I CTCTTC 4 cut(s) 282, 398, 712, 1137
BstAPI GCANNNNNTGC 1 cut(s) 222
BstBAI YACGTR 2 cut(s) 151, 929
BstC8I GCNNGC 4 cut(s) 227, 337, 838, 1266
BstDEI CTNAG 4 cut(s) 44, 348, 665, 1161
BstF5I GGATG 2 cut(s) 735, 1249
BstFNI CGCG 1 cut(s) 961
BstKTI GATC 3 cut(s) 133, 694, 1072
BstMAI GTCTC 3 cut(s) 62, 206, 1112
BstMBI GATC 3 cut(s) 130, 691, 1069
BstMWI GCNNNNNNNGC 7 cut(s) 18, 27, 96, 222, 341, 955, 1178
BstNI CCWGG 2 cut(s) 115, 1000
BstNSI RCATGY 3 cut(s) 889, 904, 1238
BstSCI CCNGG 3 cut(s) 113, 355, 998
BstSFI CTRYAG 1 cut(s) 1269
BstSLI GKGCMC 1 cut(s) 337
BstUI CGCG 1 cut(s) 961
BstV1I GCAGC 4 cut(s) 199, 887, 1093, 1248
BstV2I GAAGAC 1 cut(s) 1233
BsuI GTATCC 1 cut(s) 1057
BsuRI GGCC 7 cut(s) 61, 99, 239, 344, 423, 552, 1254
BtgZI GCGATG 1 cut(s) 573
BtsCI GGATG 2 cut(s) 735, 1249
BtsI GCAGTG 1 cut(s) 721
BtsIMutI CAGTG 2 cut(s) 189, 721
Cac8I GCNNGC 4 cut(s) 227, 337, 838, 1266
CciI TCATGA 1 cut(s) 439
Cfr13I GGNCC 3 cut(s) 97, 110, 237
CseI GACGC 1 cut(s) 961
CsiI ACCWGGT 1 cut(s) 998
Csp6I GTAC 2 cut(s) 757, 996
CspCI CAANNNNNGTGG 2 cut(s) 193, 228
CviAII CATG 8 cut(s) 311, 340, 440, 844, 886, 892, 901, 1235
CviQI GTAC 2 cut(s) 757, 996
DdeI CTNAG 4 cut(s) 44, 348, 665, 1161
DpnI GATC 3 cut(s) 132, 693, 1071
DpnII GATC 3 cut(s) 130, 691, 1069
EaeI YGGCCR 1 cut(s) 1252
Eam1104I CTCTTC 4 cut(s) 282, 398, 712, 1137
EarI CTCTTC 4 cut(s) 282, 398, 712, 1137
EciI GGCGGA 3 cut(s) 93, 239, 649
Eco130I CCWWGG 1 cut(s) 1187
Eco147I AGGCCT 2 cut(s) 61, 423
Eco24I GRGCYC 1 cut(s) 748
Eco31I GGTCTC 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 110
EcoO109I RGGNCCY 2 cut(s) 97, 110
EcoRI GAATTC 1 cut(s) 178
EcoRII CCWGG 2 cut(s) 113, 998
EcoT14I CCWWGG 1 cut(s) 1187
EcoT38I GRGCYC 1 cut(s) 748
ErhI CCWWGG 1 cut(s) 1187
FaeI CATG 8 cut(s) 314, 343, 443, 847, 889, 895, 904, 1238
FaqI GGGAC 4 cut(s) 96, 959, 1004, 1227
FatI CATG 8 cut(s) 310, 339, 439, 843, 885, 891, 900, 1234
FbaI TGATCA 2 cut(s) 691, 1069
Fnu4HI GCNGC 7 cut(s) 49, 188, 876, 959, 1107, 1110, 1262
FokI GGATG 2 cut(s) 722, 1256
FriOI GRGCYC 1 cut(s) 748
Fsp4HI GCNGC 7 cut(s) 49, 188, 876, 959, 1107, 1110, 1262
FspBI CTAG 1 cut(s) 1208
GluI GCNGC 7 cut(s) 49, 188, 876, 959, 1107, 1110, 1262
HaeIII GGCC 7 cut(s) 61, 99, 239, 344, 423, 552, 1254
HapII CCGG 3 cut(s) 357, 534, 794
HgaI GACGC 1 cut(s) 961
Hin1II CATG 8 cut(s) 314, 343, 443, 847, 889, 895, 904, 1238
HinfI GANTC 3 cut(s) 595, 704, 1120
HpaII CCGG 3 cut(s) 357, 534, 794
HphI GGTGA 3 cut(s) 412, 686, 1027
Hpy188I TCNGA 5 cut(s) 233, 743, 1027, 1069, 1074
Hpy188III TCNNGA 2 cut(s) 302, 440
Hpy99I CGWCG 1 cut(s) 127
HpyAV CCTTC 7 cut(s) 51, 161, 283, 574, 686, 721, 1044
HpyCH4III ACNGT 6 cut(s) 209, 519, 995, 1059, 1065, 1130
HpyCH4IV ACGT 4 cut(s) 150, 415, 928, 1216
HpyCH4V TGCA 6 cut(s) 21, 187, 225, 875, 1181, 1264
HpyF10VI GCNNNNNNNGC 7 cut(s) 18, 27, 96, 222, 341, 955, 1178
HpyF3I CTNAG 4 cut(s) 44, 348, 665, 1161
HpySE526I ACGT 4 cut(s) 150, 415, 928, 1216
Hsp92II CATG 8 cut(s) 314, 343, 443, 847, 889, 895, 904, 1238
Ksp22I TGATCA 2 cut(s) 691, 1069
Kzo9I GATC 3 cut(s) 130, 691, 1069
LmnI GCTCC 3 cut(s) 234, 743, 845
Lsp1109I GCAGC 4 cut(s) 199, 887, 1093, 1248
LweI GCATC 1 cut(s) 1205
MabI ACCWGGT 1 cut(s) 998
MaeI CTAG 1 cut(s) 1208
MaeII ACGT 4 cut(s) 150, 415, 928, 1216
MaeIII GTNAC 5 cut(s) 14, 477, 1002, 1059, 1149
MalI GATC 3 cut(s) 132, 693, 1071
MboI GATC 3 cut(s) 130, 691, 1069
MboII GAAGA 6 cut(s) 274, 299, 415, 699, 1154, 1238
MfeI CAATTG 1 cut(s) 1200
MhlI GDGCHC 2 cut(s) 337, 748
MluCI AATT 7 cut(s) 178, 256, 382, 556, 577, 931, 1200
MlyI GAGTC 3 cut(s) 589, 698, 1114
MmeI TCCRAC 1 cut(s) 1119
MseI TTAA 3 cut(s) 24, 447, 494
MslI CAYNNNNRTG 3 cut(s) 398, 536, 890
MspA1I CMGCKG 2 cut(s) 12, 48
MspI CCGG 3 cut(s) 357, 534, 794
MspR9I CCNGG 3 cut(s) 115, 357, 1000
MunI CAATTG 1 cut(s) 1200
Mva1269I GAATGC 1 cut(s) 543
MvaI CCWGG 2 cut(s) 115, 1000
MvnI CGCG 1 cut(s) 961
MwoI GCNNNNNNNGC 7 cut(s) 18, 27, 96, 222, 341, 955, 1178
NciI CCSGG 1 cut(s) 357
NdeII GATC 3 cut(s) 130, 691, 1069
NlaIII CATG 8 cut(s) 314, 343, 443, 847, 889, 895, 904, 1238
NlaIV GGNNCC 6 cut(s) 112, 230, 271, 745, 767, 1276
NmeAIII GCCGAG 1 cut(s) 1067
NmuCI GTSAC 3 cut(s) 477, 1002, 1059
NspI RCATGY 3 cut(s) 889, 904, 1238
OliI CACNNNNGTG 1 cut(s) 398
PagI TCATGA 1 cut(s) 439
PceI AGGCCT 2 cut(s) 61, 423
PciI ACATGT 3 cut(s) 885, 900, 1234
PctI GAATGC 1 cut(s) 543
PflFI GACNNNGTC 1 cut(s) 414
PkrI GCNGC 7 cut(s) 50, 189, 877, 960, 1108, 1111, 1263
PleI GAGTC 3 cut(s) 589, 698, 1114
PpsI GAGTC 3 cut(s) 589, 698, 1114
Ppu21I YACGTR 2 cut(s) 151, 929
PpuMI RGGWCCY 1 cut(s) 110
PscI ACATGT 3 cut(s) 885, 900, 1234
PshBI ATTAAT 1 cut(s) 24
Psp5II RGGWCCY 1 cut(s) 110
Psp6I CCWGG 2 cut(s) 113, 998
PspGI CCWGG 2 cut(s) 113, 998
PspN4I GGNNCC 6 cut(s) 112, 230, 271, 745, 767, 1276
PspPI GGNCC 3 cut(s) 97, 110, 237
PspPPI RGGWCCY 1 cut(s) 110
PsyI GACNNNGTC 1 cut(s) 414
RsaI GTAC 2 cut(s) 758, 997
RsaNI GTAC 2 cut(s) 757, 996
RseI CAYNNNNRTG 3 cut(s) 398, 536, 890
SaqAI TTAA 3 cut(s) 24, 447, 494
SatI GCNGC 7 cut(s) 49, 188, 876, 959, 1107, 1110, 1262
Sau3AI GATC 3 cut(s) 130, 691, 1069
Sau96I GGNCC 3 cut(s) 97, 110, 237
SchI GAGTC 3 cut(s) 589, 698, 1114
ScrFI CCNGG 3 cut(s) 115, 357, 1000
SduI GDGCHC 2 cut(s) 337, 748
SexAI ACCWGGT 1 cut(s) 998
SfaNI GCATC 1 cut(s) 1205
SfcI CTRYAG 1 cut(s) 1269
SinI GGWCC 1 cut(s) 110
SmiMI CAYNNNNRTG 3 cut(s) 398, 536, 890
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
Sse9I AATT 7 cut(s) 178, 256, 382, 556, 577, 931, 1200
SseBI AGGCCT 2 cut(s) 61, 423
SsiI CCGC 9 cut(s) 12, 30, 48, 78, 250, 660, 754, 959, 1110
SspI AATATT 2 cut(s) 138, 687
SspMI CTAG 1 cut(s) 1208
StuI AGGCCT 2 cut(s) 61, 423
StyD4I CCNGG 3 cut(s) 113, 355, 998
StyI CCWWGG 1 cut(s) 1187
TaaI ACNGT 6 cut(s) 209, 519, 995, 1059, 1065, 1130
TaiI ACGT 4 cut(s) 153, 418, 931, 1219
TasI AATT 7 cut(s) 178, 256, 382, 556, 577, 931, 1200
TauI GCSGC 3 cut(s) 51, 961, 1112
Tru1I TTAA 3 cut(s) 24, 447, 494
Tru9I TTAA 3 cut(s) 24, 447, 494
TscAI CASTG 2 cut(s) 189, 728
TseFI GTSAC 3 cut(s) 477, 1002, 1059
TseI GCWGC 4 cut(s) 187, 875, 1106, 1261
Tsp45I GTSAC 3 cut(s) 477, 1002, 1059
TspDTI ATGAA 3 cut(s) 299, 387, 570
TspGWI ACGGA 1 cut(s) 140
TspRI CASTG 2 cut(s) 189, 728
Tth111I GACNNNGTC 1 cut(s) 414
VpaK11BI GGWCC 1 cut(s) 110
VspI ATTAAT 1 cut(s) 24
XapI RAATTY 3 cut(s) 178, 556, 577
XceI RCATGY 3 cut(s) 889, 904, 1238
XspI CTAG 1 cut(s) 1208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.