MD05G1136100.v1.1
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0003638
Physical Location & Seq
Forward (+)
26433402 .. 26433951
550 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1136100.v1.1.491

Sequence Viewer

Length: 501 bp
ATGAGTCGGACAACAAATGAGAGTGAAGATGGAGTGCTGTCCAAGGATCAGATTGATTCTCCGTTGATGGATGAGAGTAATGGAGGAAGTGGAAATGGTGGAATGGTTCTAAAGAAAGGGACATGGACCTCGGCTGAAGATGCAATTTTGGTGGAGTATGTTAAGAAGCATGGGGAGGGAAACTGGAATGCCGTTCAGAAGCACTCAGGCCTGTTCCGTTGTGGCAAAAGCTGCCGGTTGCGATGGGCAAATCACCTAAGGCCGAACCTGAAGAAAGGGGCATTGACTCTTGAAGAAGAACGTCTCATTGTTGAACTCCATGCCAAGATGGGGAACAAATGGGCACGCATGGCTGCACACGTAGTGATTTCTATTCGTTATGTGTGTTCCAGTAGTGATTTCTCTCAATTGGAAGGGATTGATGATCTTGCAAAAAAAATGGTGGAGACAAGGATGCATCAATTGCAACTGCTTCAGTGGAGAGAGCATTTTCTGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006996 GO:0007033 GO:0007154 GO:0007165 GO:0007275 GO:0007276 GO:0008150 GO:0008285 GO:0009555 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009739 GO:0009740 GO:0009751 GO:0009755 GO:0009787 GO:0009789 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033993 GO:0040008 GO:0042127 GO:0042221 GO:0042493 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044703 GO:0045893 GO:0045926 GO:0045935 GO:0046677 GO:0048229 GO:0048232 GO:0048235 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048608 GO:0048609 GO:0048653 GO:0048654 GO:0048655 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071840 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905957 GO:1905959 GO:1990019 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

167

Amino Acids

18.74

Weight (kDa)

8.44

Isoelectric Point (pI)

39.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 39 - 86 6.1e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 42 - 101 8.5e-14 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 92 - 121 1e-05 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 54
AcuI CTGAAG 3 cut(s) 156, 290, 458
AdeI CACNNNGTG 1 cut(s) 364
AfiI CCNNNNNNNGG 1 cut(s) 330
AflIII ACRYGT 1 cut(s) 358
AgsI TTSAA 2 cut(s) 293, 314
AluBI AGCT 1 cut(s) 231
AluI AGCT 1 cut(s) 231
Alw26I GTCTC 2 cut(s) 308, 440
AlwI GGATC 1 cut(s) 54
AoxI GGCC 2 cut(s) 208, 260
ApeKI GCWGC 2 cut(s) 231, 353
AspS9I GGNCC 1 cut(s) 126
AsuHPI GGTGA 1 cut(s) 245
AvaII GGWCC 1 cut(s) 126
AxyI CCTNAGG 1 cut(s) 257
BaeGI GKGCMC 1 cut(s) 346
BbvI GCAGC 2 cut(s) 218, 340
BccI CCATC 4 cut(s) 23, 61, 237, 322
BceAI ACGGC 1 cut(s) 176
BcoDI GTCTC 2 cut(s) 308, 440
BisI GCNGC 2 cut(s) 232, 354
BlsI GCNGC 2 cut(s) 233, 355
Bme18I GGWCC 1 cut(s) 126
BmgT120I GGNCC 1 cut(s) 126
BmsI GCATC 3 cut(s) 130, 444, 466
BsaAI YACGTR 1 cut(s) 361
BsaJI CCNNGG 2 cut(s) 42, 129
Bsc4I CCNNNNNNNGG 1 cut(s) 330
Bse118I RCCGGY 1 cut(s) 234
Bse1I ACTGG 2 cut(s) 188, 390
Bse21I CCTNAGG 1 cut(s) 257
BseDI CCNNGG 2 cut(s) 42, 129
BseGI GGATG 2 cut(s) 76, 459
BseLI CCNNNNNNNGG 1 cut(s) 330
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 2 cut(s) 188, 390
BseSI GKGCMC 1 cut(s) 346
BseXI GCAGC 2 cut(s) 218, 340
BsgI GTGCAG 1 cut(s) 339
BshFI GGCC 2 cut(s) 210, 262
BsiSI CCGG 1 cut(s) 235
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 1 cut(s) 330
BsmAI GTCTC 2 cut(s) 308, 440
BsmBI CGTCTC 1 cut(s) 308
BsmFI GGGAC 1 cut(s) 133
BsmI GAATGC 1 cut(s) 193
BsnI GGCC 2 cut(s) 210, 262
Bsp1286I GDGCHC 1 cut(s) 346
Bsp143I GATC 2 cut(s) 46, 424
BspANI GGCC 2 cut(s) 210, 262
BspCNI CTCAG 1 cut(s) 218
BspHI TCATGA 1 cut(s) 497
BspPI GGATC 1 cut(s) 54
BsrFI RCCGGY 1 cut(s) 234
BsrI ACTGG 2 cut(s) 188, 390
BssAI RCCGGY 1 cut(s) 234
BssECI CCNNGG 2 cut(s) 42, 129
BssMI GATC 2 cut(s) 46, 424
BssT1I CCWWGG 1 cut(s) 42
BstAPI GCANNNNNTGC 2 cut(s) 231, 463
BstBAI YACGTR 1 cut(s) 361
BstC8I GCNNGC 1 cut(s) 346
BstDEI CTNAG 2 cut(s) 205, 257
BstF5I GGATG 2 cut(s) 76, 459
BstKTI GATC 2 cut(s) 49, 427
BstMAI GTCTC 2 cut(s) 308, 440
BstMBI GATC 2 cut(s) 46, 424
BstMWI GCNNNNNNNGC 4 cut(s) 140, 231, 350, 463
BstSLI GKGCMC 1 cut(s) 346
BstV1I GCAGC 2 cut(s) 218, 340
Bsu36I CCTNAGG 1 cut(s) 257
BsuRI GGCC 2 cut(s) 210, 262
BtgZI GCGATG 1 cut(s) 256
BtsCI GGATG 2 cut(s) 76, 459
BtsIMutI CAGTG 1 cut(s) 482
Cac8I GCNNGC 1 cut(s) 346
CciI TCATGA 1 cut(s) 497
Cfr10I RCCGGY 1 cut(s) 234
Cfr13I GGNCC 1 cut(s) 126
CspCI CAANNNNNGTGG 2 cut(s) 132, 167
CviAII CATG 5 cut(s) 123, 170, 320, 349, 498
CviJI RGCY 5 cut(s) 134, 210, 231, 262, 353
CviKI_1 RGCY 5 cut(s) 134, 210, 231, 262, 353
DdeI CTNAG 2 cut(s) 205, 257
DpnI GATC 2 cut(s) 48, 426
DpnII GATC 2 cut(s) 46, 424
DraIII CACNNNGTG 1 cut(s) 364
Eco130I CCWWGG 1 cut(s) 42
Eco147I AGGCCT 1 cut(s) 210
Eco47I GGWCC 1 cut(s) 126
Eco57I CTGAAG 3 cut(s) 156, 290, 458
Eco81I CCTNAGG 1 cut(s) 257
EcoT14I CCWWGG 1 cut(s) 42
EcoT22I ATGCAT 1 cut(s) 459
ErhI CCWWGG 1 cut(s) 42
Esp3I CGTCTC 1 cut(s) 308
FaeI CATG 5 cut(s) 126, 173, 323, 352, 501
FaiI YATR 7 cut(s) 124, 159, 171, 321, 350, 381, 499
FaqI GGGAC 1 cut(s) 133
FatI CATG 5 cut(s) 122, 169, 319, 348, 497
Fnu4HI GCNGC 2 cut(s) 232, 354
FokI GGATG 2 cut(s) 83, 466
Fsp4HI GCNGC 2 cut(s) 232, 354
GluI GCNGC 2 cut(s) 232, 354
HaeIII GGCC 2 cut(s) 210, 262
HapII CCGG 1 cut(s) 235
Hin1II CATG 5 cut(s) 126, 173, 323, 352, 501
HinfI GANTC 3 cut(s) 4, 56, 286
HpaII CCGG 1 cut(s) 235
HphI GGTGA 1 cut(s) 245
Hpy188I TCNGA 3 cut(s) 9, 51, 198
Hpy188III TCNNGA 2 cut(s) 290, 498
HpyAV CCTTC 1 cut(s) 407
HpyCH4IV ACGT 2 cut(s) 301, 360
HpyCH4V TGCA 5 cut(s) 143, 356, 431, 457, 466
HpyF10VI GCNNNNNNNGC 4 cut(s) 140, 231, 350, 463
HpyF3I CTNAG 2 cut(s) 205, 257
HpySE526I ACGT 2 cut(s) 301, 360
Hsp92II CATG 5 cut(s) 126, 173, 323, 352, 501
Kzo9I GATC 2 cut(s) 46, 424
LpnPI CCDG 6 cut(s) 169, 192, 224, 248, 281, 403
Lsp1109I GCAGC 2 cut(s) 218, 340
LweI GCATC 3 cut(s) 130, 444, 466
MaeII ACGT 2 cut(s) 301, 360
MalI GATC 2 cut(s) 48, 426
MboI GATC 2 cut(s) 46, 424
MboII GAAGA 5 cut(s) 38, 149, 283, 305, 308
MfeI CAATTG 2 cut(s) 407, 461
MhlI GDGCHC 1 cut(s) 346
MluCI AATT 3 cut(s) 144, 407, 461
MlyI GAGTC 2 cut(s) 13, 280
MnlI CCTC 3 cut(s) 77, 139, 169
Mph1103I ATGCAT 1 cut(s) 459
MseI TTAA 1 cut(s) 162
MspI CCGG 1 cut(s) 235
MunI CAATTG 2 cut(s) 407, 461
Mva1269I GAATGC 1 cut(s) 193
MwoI GCNNNNNNNGC 4 cut(s) 140, 231, 350, 463
NdeII GATC 2 cut(s) 46, 424
NlaIII CATG 5 cut(s) 126, 173, 323, 352, 501
NmeAIII GCCGAG 1 cut(s) 110
NsiI ATGCAT 1 cut(s) 459
PagI TCATGA 1 cut(s) 497
PceI AGGCCT 1 cut(s) 210
PctI GAATGC 1 cut(s) 193
PfeI GAWTC 1 cut(s) 56
PkrI GCNGC 2 cut(s) 233, 355
PleI GAGTC 2 cut(s) 12, 280
PpsI GAGTC 2 cut(s) 12, 280
Ppu21I YACGTR 1 cut(s) 361
PspPI GGNCC 1 cut(s) 126
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 2 cut(s) 232, 354
Sau3AI GATC 2 cut(s) 46, 424
Sau96I GGNCC 1 cut(s) 126
SchI GAGTC 2 cut(s) 13, 280
SduI GDGCHC 1 cut(s) 346
SetI ASST 6 cut(s) 131, 233, 258, 270, 304, 363
SfaNI GCATC 3 cut(s) 130, 444, 466
SinI GGWCC 1 cut(s) 126
Sse9I AATT 3 cut(s) 144, 407, 461
SseBI AGGCCT 1 cut(s) 210
StuI AGGCCT 1 cut(s) 210
StyI CCWWGG 1 cut(s) 42
TaiI ACGT 2 cut(s) 304, 363
TasI AATT 3 cut(s) 144, 407, 461
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 1 cut(s) 482
TseI GCWGC 2 cut(s) 231, 353
TspGWI ACGGA 2 cut(s) 51, 206
TspRI CASTG 1 cut(s) 482
VpaK11BI GGWCC 1 cut(s) 126
Zsp2I ATGCAT 1 cut(s) 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.