FvH4_3g22960
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003638
Physical Location & Seq
Reverse (-)
16095810 .. 16098246
2437 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g22960.t1

Sequence Viewer

Length: 1575 bp
ATGGCACATAACGGTGACGGCATTAACGGCGGTGATGCTGTGCTCAGCAGCGAAGGAAGGTCCTCGGAGACAAGTGGAGGAATGGAGGGAAATAACGGCCTAAAGAAAGGTCCGTGGACGGCAACGGAGGATCAAATTTTGATGGACTACGTGAGGAAACACGGCGAAGGGAACTGGAATTCTGTGCAGCGGAATTCCGGTCTCAACCGTTGTGGCAAGAGTTGCAGGCTCCGATGGGCCAATCATCTCCGCCCTAATTTGAAGAAAGGTGCCTTCACACCAGAGGAAGAGAGGCTCATTCTTGAGCTGCATGCCAAATACGGCAATAAATGGGCACGCATGGCCTCTCAGCTACCCGGACGAACAGACAATGAAATAAAGAATTACTGGAACACAAGGGTGAAGAGGCGACAACGCCAAGGCCTCCCTCTATATCCTCATGACATTAAGCAATCCCAACAACAATCTCATTCGCAGTCACAACCAACCTCTCTAACCGTTCCCACAAGCACCGGATTGCCACCCACAGGCCAAAATTATTCCTTCCAGTTTCAAAGCTCATCATCGTCGAATGCTCATCAGCTCCCTCCTATAGGCCCTAGTCATCACCCCCATCACTCTACCGCCTCCTCTCCCAAATCCGCAATCAATCATTACCTTCCTGTATTTGATCACTCCACCGACCCTTCCTTCACCTTCAACCGCCCCACTCCCATCCTCGGAGCTCCATTGCGGTACAAAAGGTACCGCAACAGCCATGGCATTTCTCCTCCGGTTTCTCCAACCCCACAAAGAAGCAACTCTATTTTACGAACCAGCTCCATGCCTGACATATCTTACAATCAGCATTTTGCACCAGGAAACATGTCCATGCCTGACATGGCCTCTTTTCAGTTTCAGCCACCAAGGAATTTCAGCGGGTCGTTGCCACCATTGCCACGGTCCACCAGCAGCCAGTTTGATTTTGGGGACAGTACCAGGCCACTTTATTCGGTGAAGTCATCGGAACTTCCTTCAAGCCAAGTATCGCAAACACAGTCACCGTGTGATCAGCTCACCAATGATAACAAGCTACATGTGGCTGCTGCAGCTAATGGGACTCATTGCAGCAATGTGTTGGAAGAGTTGTTACAAGAAGCTGAGGCATTGGCTTCTGTCGCAACTCCAAGGAATTCGAAAGCATCAATTGGTTTATTGGGTTCGTTTGAAGACAAGCATGGTTTGGATGGTTATGGCCGTTGGCTGCAGGCTGCAGGTTCCACAAATAACTCTGTATCGGATATATATGCAGATATGAAGCAAATTCAGGATCATCATGACCAGATGAATTATTCCTTGCCTGAAGACTTGTCGAAGCTGTTTCGTTTTATTCCTTCAACGGAGCCGGTCTCCGATTGGTACAGTACTGATAGCGGTGAACTCTCCAATGGCGGCCAATCTTCTGGAGTAACTGAGGCTAGTTTTGAGTTTGACATGCAGCAAAATATGGCTTCATTGTTCCCTAGTATTGTTGCCTCCTCAGCAGACCATGACAGAGGTCCTAACAATTGGGACAACTTGCCTGGAATGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

525

Amino Acids

57.67

Weight (kDa)

6.88

Isoelectric Point (pI)

57.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 36 - 83 9.4e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 39 - 98 1.6e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 89 - 132 7.4e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 92 - 136 1.3e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1244
Acc65I GGTACC 1 cut(s) 744
AccB1I GGYRCC 2 cut(s) 269, 744
AclWI GGATC 2 cut(s) 138, 1317
AcoI YGGCCR 2 cut(s) 1234, 1432
AcsI RAATTY 6 cut(s) 135, 178, 193, 910, 1171, 1302
AcuI CTGAAG 1 cut(s) 1362
AdeI CACNNNGTG 1 cut(s) 1046
AfaI GTAC 5 cut(s) 737, 746, 976, 1400, 1405
AfiI CCNNNNNNNGG 3 cut(s) 527, 593, 719
AflIII ACRYGT 2 cut(s) 864, 1075
AgsI TTSAA 6 cut(s) 262, 554, 700, 1017, 1208, 1377
AjnI CCWGG 3 cut(s) 856, 977, 1561
AleI CACNNNNGTG 1 cut(s) 398
Alw21I GWGCWC 2 cut(s) 45, 727
Alw26I GTCTC 3 cut(s) 62, 206, 1393
AlwI GGATC 2 cut(s) 138, 1317
ApoI RAATTY 6 cut(s) 135, 178, 193, 910, 1171, 1302
Asp718I GGTACC 1 cut(s) 744
AspS9I GGNCC 6 cut(s) 60, 110, 237, 596, 942, 1538
AsuC2I CCSGG 1 cut(s) 357
AsuHPI GGTGA 9 cut(s) 26, 44, 412, 599, 685, 1006, 1032, 1048, 1427
AsuII TTCGAA 1 cut(s) 1175
AvaII GGWCC 4 cut(s) 60, 110, 942, 1538
BaeGI GKGCMC 1 cut(s) 337
BanI GGYRCC 2 cut(s) 269, 744
BanII GRGCYC 1 cut(s) 727
BarI GAAGNNNNNNTAC 2 cut(s) 1113, 1145
BbsI GAAGAC 2 cut(s) 1215, 1350
Bbv12I GWGCWC 2 cut(s) 45, 727
BbvCI CCTCAGC 2 cut(s) 1140, 1519
BccI CCATC 5 cut(s) 136, 228, 621, 722, 1220
BceAI ACGGC 7 cut(s) 34, 43, 112, 135, 178, 337, 1221
BciT130I CCWGG 3 cut(s) 858, 979, 1563
BclI TGATCA 2 cut(s) 670, 1048
BcnI CCSGG 1 cut(s) 357
BcoDI GTCTC 3 cut(s) 62, 206, 1393
BfaI CTAG 3 cut(s) 600, 1458, 1503
BfmI CTRYAG 4 cut(s) 591, 1086, 1244, 1251
BfuAI ACCTGC 1 cut(s) 1244
BlpI GCTNAGC 1 cut(s) 44
BmcAI AGTACT 1 cut(s) 1405
Bme1390I CCNGG 4 cut(s) 357, 858, 979, 1563
Bme18I GGWCC 4 cut(s) 60, 110, 942, 1538
BmgT120I GGNCC 6 cut(s) 60, 110, 237, 596, 942, 1538
BmiI GGNNCC 5 cut(s) 230, 271, 746, 1258, 1383
BmrFI CCNGG 4 cut(s) 357, 858, 979, 1563
BmsI GCATC 2 cut(s) 25, 1190
BoxI GACNNNNGTC 1 cut(s) 1536
BpiI GAAGAC 2 cut(s) 1215, 1350
BplI GAGNNNNNCTC 2 cut(s) 1373, 1405
BpmI CTGGAG 1 cut(s) 1464
Bpu10I CCTNAGC 2 cut(s) 1140, 1519
Bpu1102I GCTNAGC 1 cut(s) 44
Bpu14I TTCGAA 1 cut(s) 1175
BpuEI CTTGAG 1 cut(s) 323
BpuMI CCSGG 1 cut(s) 357
BsaAI YACGTR 1 cut(s) 151
BsaI GGTCTC 2 cut(s) 206, 1393
BsaJI CCNNGG 8 cut(s) 63, 113, 418, 718, 757, 905, 938, 1166
BsaWI WCCGGW 3 cut(s) 197, 512, 772
Bsc4I CCNNNNNNNGG 3 cut(s) 527, 593, 719
Bse118I RCCGGY 1 cut(s) 1384
Bse1I ACTGG 4 cut(s) 179, 392, 547, 955
Bse3DI GCAATG 4 cut(s) 728, 932, 1102, 1117
BseBI CCWGG 3 cut(s) 858, 979, 1563
BseDI CCNNGG 8 cut(s) 63, 113, 418, 718, 757, 905, 938, 1166
BseGI GGATG 2 cut(s) 714, 1231
BseLI CCNNNNNNNGG 3 cut(s) 527, 593, 719
BseMI GCAATG 4 cut(s) 728, 932, 1102, 1117
BseMII CTCAG 5 cut(s) 58, 362, 1131, 1443, 1533
BseNI ACTGG 4 cut(s) 179, 392, 547, 955
BseRI GAGGAG 3 cut(s) 619, 759, 1507
BseSI GKGCMC 1 cut(s) 337
BsgI GTGCAG 1 cut(s) 206
BshNI GGYRCC 2 cut(s) 269, 744
BsiHKAI GWGCWC 2 cut(s) 45, 727
BsiSI CCGG 5 cut(s) 198, 357, 513, 773, 1385
BslFI GGGAC 3 cut(s) 983, 1111, 1565
BslI CCNNNNNNNGG 3 cut(s) 527, 593, 719
BsmAI GTCTC 3 cut(s) 62, 206, 1393
BsmFI GGGAC 3 cut(s) 983, 1111, 1565
BsmI GAATGC 1 cut(s) 577
Bso31I GGTCTC 2 cut(s) 206, 1393
Bsp119I TTCGAA 1 cut(s) 1175
Bsp1286I GDGCHC 3 cut(s) 45, 337, 727
Bsp143I GATC 4 cut(s) 130, 670, 1048, 1309
Bsp1720I GCTNAGC 1 cut(s) 44
Bsp19I CCATGG 1 cut(s) 757
BspCNI CTCAG 5 cut(s) 57, 361, 1132, 1444, 1532
BspHI TCATGA 2 cut(s) 439, 1315
BspLI GGNNCC 5 cut(s) 230, 271, 746, 1258, 1383
BspMAI CTGCAG 3 cut(s) 1090, 1248, 1255
BspMI ACCTGC 1 cut(s) 1244
BspPI GGATC 2 cut(s) 138, 1317
BspT104I TTCGAA 1 cut(s) 1175
BspT107I GGYRCC 2 cut(s) 269, 744
BspTNI GGTCTC 2 cut(s) 206, 1393
BsrDI GCAATG 4 cut(s) 728, 932, 1102, 1117
BsrFI RCCGGY 1 cut(s) 1384
BsrI ACTGG 4 cut(s) 179, 392, 547, 955
BssAI RCCGGY 1 cut(s) 1384
BssECI CCNNGG 8 cut(s) 63, 113, 418, 718, 757, 905, 938, 1166
BssMI GATC 4 cut(s) 130, 670, 1048, 1309
BssT1I CCWWGG 4 cut(s) 418, 757, 905, 1166
Bst2UI CCWGG 3 cut(s) 858, 979, 1563
Bst4CI ACNGT 8 cut(s) 14, 209, 499, 942, 974, 1038, 1044, 1403
Bst6I CTCTTC 3 cut(s) 282, 398, 1116
BstAPI GCANNNNNTGC 1 cut(s) 222
BstBAI YACGTR 1 cut(s) 151
BstBI TTCGAA 1 cut(s) 1175
BstC8I GCNNGC 4 cut(s) 227, 312, 337, 1248
BstDEI CTNAG 5 cut(s) 44, 348, 1140, 1452, 1519
BstDSI CCRYGG 3 cut(s) 113, 757, 938
BstENI CCTNNNNNAGG 1 cut(s) 591
BstF5I GGATG 2 cut(s) 714, 1231
BstKTI GATC 4 cut(s) 133, 673, 1051, 1312
BstMAI GTCTC 3 cut(s) 62, 206, 1393
BstMBI GATC 4 cut(s) 130, 670, 1048, 1309
BstMWI GCNNNNNNNGC 7 cut(s) 27, 222, 341, 934, 1088, 1157, 1520
BstNI CCWGG 3 cut(s) 858, 979, 1563
BstNSI RCATGY 4 cut(s) 314, 868, 1079, 1477
BstPAI GACNNNNGTC 1 cut(s) 1536
BstSCI CCNGG 4 cut(s) 355, 856, 977, 1561
BstSFI CTRYAG 4 cut(s) 591, 1086, 1244, 1251
BstSLI GKGCMC 1 cut(s) 337
BstV2I GAAGAC 2 cut(s) 1215, 1350
BstXI CCANNNNNNTGG 1 cut(s) 1442
BtgI CCRYGG 3 cut(s) 113, 757, 938
BtsCI GGATG 2 cut(s) 714, 1231
BveI ACCTGC 1 cut(s) 1244
Cac8I GCNNGC 4 cut(s) 227, 312, 337, 1248
CciI TCATGA 2 cut(s) 439, 1315
Cfr10I RCCGGY 1 cut(s) 1384
Cfr13I GGNCC 6 cut(s) 60, 110, 237, 596, 942, 1538
Csp6I GTAC 5 cut(s) 736, 745, 975, 1399, 1404
CspCI CAANNNNNGTGG 2 cut(s) 193, 228
CviQI GTAC 5 cut(s) 736, 745, 975, 1399, 1404
DdeI CTNAG 5 cut(s) 44, 348, 1140, 1452, 1519
DpnI GATC 4 cut(s) 132, 672, 1050, 1311
DpnII GATC 4 cut(s) 130, 670, 1048, 1309
DraIII CACNNNGTG 1 cut(s) 1046
EaeI YGGCCR 2 cut(s) 1234, 1432
Eam1104I CTCTTC 3 cut(s) 282, 398, 1116
EarI CTCTTC 3 cut(s) 282, 398, 1116
EciI GGCGGA 1 cut(s) 239
Ecl136II GAGCTC 1 cut(s) 725
Eco130I CCWWGG 4 cut(s) 418, 757, 905, 1166
Eco147I AGGCCT 1 cut(s) 423
Eco24I GRGCYC 1 cut(s) 727
Eco31I GGTCTC 2 cut(s) 206, 1393
Eco47I GGWCC 4 cut(s) 60, 110, 942, 1538
Eco53kI GAGCTC 1 cut(s) 725
Eco57I CTGAAG 1 cut(s) 1362
EcoICRI GAGCTC 1 cut(s) 725
EcoNI CCTNNNNNAGG 1 cut(s) 591
EcoO109I RGGNCCY 3 cut(s) 60, 596, 1538
EcoRI GAATTC 3 cut(s) 178, 193, 1171
EcoRII CCWGG 3 cut(s) 856, 977, 1561
EcoT14I CCWWGG 4 cut(s) 418, 757, 905, 1166
EcoT38I GRGCYC 1 cut(s) 727
ErhI CCWWGG 4 cut(s) 418, 757, 905, 1166
FaqI GGGAC 3 cut(s) 983, 1111, 1565
FauI CCCGC 1 cut(s) 911
FbaI TGATCA 2 cut(s) 670, 1048
FokI GGATG 2 cut(s) 701, 1238
FriOI GRGCYC 1 cut(s) 727
FspBI CTAG 3 cut(s) 600, 1458, 1503
GsuI CTGGAG 1 cut(s) 1464
HapII CCGG 5 cut(s) 198, 357, 513, 773, 1385
HinfI GANTC 1 cut(s) 1099
HpaII CCGG 5 cut(s) 198, 357, 513, 773, 1385
HphI GGTGA 9 cut(s) 26, 44, 412, 599, 685, 1006, 1032, 1048, 1427
Hpy166II GTNNAC 3 cut(s) 117, 945, 1418
Hpy188I TCNGA 6 cut(s) 67, 233, 722, 1006, 1279, 1393
Hpy188III TCNNGA 5 cut(s) 302, 440, 1307, 1316, 1443
Hpy8I GTNNAC 3 cut(s) 117, 945, 1418
Hpy99I CGWCG 1 cut(s) 571
HpyCH4III ACNGT 8 cut(s) 14, 209, 499, 942, 974, 1038, 1044, 1403
HpyCH4IV ACGT 1 cut(s) 150
HpyF10VI GCNNNNNNNGC 7 cut(s) 27, 222, 341, 934, 1088, 1157, 1520
HpyF3I CTNAG 5 cut(s) 44, 348, 1140, 1452, 1519
HpySE526I ACGT 1 cut(s) 150
KpnI GGTACC 1 cut(s) 748
Ksp22I TGATCA 2 cut(s) 670, 1048
Kzo9I GATC 4 cut(s) 130, 670, 1048, 1309
LmnI GCTCC 6 cut(s) 234, 588, 722, 730, 824, 1381
LweI GCATC 2 cut(s) 25, 1190
MaeI CTAG 3 cut(s) 600, 1458, 1503
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 5 cut(s) 14, 477, 1038, 1128, 1447
MalI GATC 4 cut(s) 132, 672, 1050, 1311
MboI GATC 4 cut(s) 130, 670, 1048, 1309
MboII GAAGA 7 cut(s) 274, 299, 415, 1133, 1220, 1355, 1431
MfeI CAATTG 2 cut(s) 1185, 1546
MhlI GDGCHC 3 cut(s) 45, 337, 727
MlyI GAGTC 1 cut(s) 1093
MmeI TCCRAC 2 cut(s) 806, 1098
MseI TTAA 2 cut(s) 24, 447
MslI CAYNNNNRTG 3 cut(s) 12, 398, 869
MspA1I CMGCKG 2 cut(s) 190, 918
MspI CCGG 5 cut(s) 198, 357, 513, 773, 1385
MspR9I CCNGG 4 cut(s) 357, 858, 979, 1563
MunI CAATTG 2 cut(s) 1185, 1546
Mva1269I GAATGC 1 cut(s) 577
MvaI CCWGG 3 cut(s) 858, 979, 1563
MwoI GCNNNNNNNGC 7 cut(s) 27, 222, 341, 934, 1088, 1157, 1520
NciI CCSGG 1 cut(s) 357
NcoI CCATGG 1 cut(s) 757
NdeII GATC 4 cut(s) 130, 670, 1048, 1309
NlaIV GGNNCC 5 cut(s) 230, 271, 746, 1258, 1383
NmuCI GTSAC 3 cut(s) 14, 477, 1038
NspI RCATGY 4 cut(s) 314, 868, 1079, 1477
NspV TTCGAA 1 cut(s) 1175
OliI CACNNNNGTG 1 cut(s) 398
PaeI GCATGC 1 cut(s) 314
PagI TCATGA 2 cut(s) 439, 1315
PceI AGGCCT 1 cut(s) 423
PciI ACATGT 2 cut(s) 864, 1075
PctI GAATGC 1 cut(s) 577
PleI GAGTC 1 cut(s) 1093
PpsI GAGTC 1 cut(s) 1093
Ppu21I YACGTR 1 cut(s) 151
PpuMI RGGWCCY 2 cut(s) 60, 1538
PscI ACATGT 2 cut(s) 864, 1075
PshAI GACNNNNGTC 1 cut(s) 1536
Psp124BI GAGCTC 1 cut(s) 727
Psp5II RGGWCCY 2 cut(s) 60, 1538
Psp6I CCWGG 3 cut(s) 856, 977, 1561
PspGI CCWGG 3 cut(s) 856, 977, 1561
PspN4I GGNNCC 5 cut(s) 230, 271, 746, 1258, 1383
PspPI GGNCC 6 cut(s) 60, 110, 237, 596, 942, 1538
PspPPI RGGWCCY 2 cut(s) 60, 1538
PstI CTGCAG 3 cut(s) 1090, 1248, 1255
RsaI GTAC 5 cut(s) 737, 746, 976, 1400, 1405
RsaNI GTAC 5 cut(s) 736, 745, 975, 1399, 1404
RseI CAYNNNNRTG 3 cut(s) 12, 398, 869
SacI GAGCTC 1 cut(s) 727
SaqAI TTAA 2 cut(s) 24, 447
Sau3AI GATC 4 cut(s) 130, 670, 1048, 1309
Sau96I GGNCC 6 cut(s) 60, 110, 237, 596, 942, 1538
ScaI AGTACT 1 cut(s) 1405
SchI GAGTC 1 cut(s) 1093
ScrFI CCNGG 4 cut(s) 357, 858, 979, 1563
SduI GDGCHC 3 cut(s) 45, 337, 727
SfaNI GCATC 2 cut(s) 25, 1190
SfcI CTRYAG 4 cut(s) 591, 1086, 1244, 1251
SfuI TTCGAA 1 cut(s) 1175
SinI GGWCC 4 cut(s) 60, 110, 942, 1538
SmiMI CAYNNNNRTG 3 cut(s) 12, 398, 869
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
SphI GCATGC 1 cut(s) 314
SseBI AGGCCT 1 cut(s) 423
SspMI CTAG 3 cut(s) 600, 1458, 1503
SstI GAGCTC 1 cut(s) 727
StuI AGGCCT 1 cut(s) 423
StyD4I CCNGG 4 cut(s) 355, 856, 977, 1561
StyI CCWWGG 4 cut(s) 418, 757, 905, 1166
TaaI ACNGT 8 cut(s) 14, 209, 499, 942, 974, 1038, 1044, 1403
TaiI ACGT 1 cut(s) 153
TaqI TCGA 3 cut(s) 569, 1175, 1352
TatI WGTACW 1 cut(s) 1403
TauI GCSGC 1 cut(s) 1434
Tru1I TTAA 2 cut(s) 24, 447
Tru9I TTAA 2 cut(s) 24, 447
TseFI GTSAC 3 cut(s) 14, 477, 1038
Tsp45I GTSAC 3 cut(s) 14, 477, 1038
TspDTI ATGAA 4 cut(s) 387, 1310, 1340, 1482
TspGWI ACGGA 3 cut(s) 102, 140, 1394
VpaK11BI GGWCC 4 cut(s) 60, 110, 942, 1538
XagI CCTNNNNNAGG 1 cut(s) 591
XapI RAATTY 6 cut(s) 135, 178, 193, 910, 1171, 1302
XceI RCATGY 4 cut(s) 314, 868, 1079, 1477
XcmI CCANNNNNNNNNTGG 2 cut(s) 877, 962
XspI CTAG 3 cut(s) 600, 1458, 1503
ZrmI AGTACT 1 cut(s) 1405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.