Rroxscaffold_1G00041030
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003638
Physical Location & Seq
Forward (+)
58799248 .. 58799788
541 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00041030.1

Sequence Viewer

Length: 489 bp
ATGCCCGACATATCTTACAATCAGCATATTGCAGCAGGAAACATGTCCATTCCTGACATGTCCTCTTTTCAGTTTCAGCCAACACGTAATTTCAATGGTTTGTTGCCACCATTGCCGCGTTCCACCAGCGTCCCGTTTCATTTTGGGGACAGTACCAGGTCACTTTATTCGGTGAAGTCATCAGAGCTTCCTTCAAGCCAAGTATCCCAAACACAGTCACAGTCTGAGCAGATCACCAATGATAACAAGCTAAATATGGTGGCTGCCGCTAACGAGACTCATTACAGTAATGTGTTGGAAGAGTTGTTACGAGAAGCTGAGGCATTGGCTTCTGTTGCAACTCCAAGGAAAGCATCAATTGGTCTAGGGGGACGTTCTTTTGAAGACAAACATGTTTTGGATGGTTATGGCCGTTGGCTGCAAGCTACAGGTTCCACAAATAACTCTTTATCAGGAGACCCTAGTAAAACTCGTTCACTTTTCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

162

Amino Acids

17.68

Weight (kDa)

6.05

Isoelectric Point (pI)

64.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 118
AciI CCGC 2 cut(s) 116, 267
AcoI YGGCCR 1 cut(s) 409
AfaI GTAC 1 cut(s) 154
AflIII ACRYGT 4 cut(s) 42, 57, 83, 391
AgsI TTSAA 3 cut(s) 94, 195, 383
AjnI CCWGG 1 cut(s) 155
AluBI AGCT 4 cut(s) 187, 250, 317, 425
AluI AGCT 4 cut(s) 187, 250, 317, 425
Alw26I GTCTC 2 cut(s) 269, 450
AoxI GGCC 1 cut(s) 409
ApeKI GCWGC 3 cut(s) 32, 263, 418
AsuHPI GGTGA 2 cut(s) 184, 226
BarI GAAGNNNNNNTAC 2 cut(s) 291, 323
BbsI GAAGAC 1 cut(s) 390
BbvCI CCTCAGC 1 cut(s) 318
BbvI GCAGC 3 cut(s) 44, 250, 405
BccI CCATC 1 cut(s) 395
BceAI ACGGC 1 cut(s) 396
BciT130I CCWGG 1 cut(s) 157
BciVI GTATCC 1 cut(s) 214
BcoDI GTCTC 2 cut(s) 269, 450
BfaI CTAG 2 cut(s) 365, 462
BfmI CTRYAG 1 cut(s) 426
BfuI GTATCC 1 cut(s) 214
BisI GCNGC 5 cut(s) 33, 116, 264, 267, 419
BlsI GCNGC 5 cut(s) 34, 117, 265, 268, 420
Bme1390I CCNGG 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 433
BmrFI CCNGG 1 cut(s) 157
BmsI GCATC 1 cut(s) 362
BpiI GAAGAC 1 cut(s) 390
Bpu10I CCTNAGC 1 cut(s) 318
BsaAI YACGTR 1 cut(s) 86
BsaI GGTCTC 1 cut(s) 450
BsaJI CCNNGG 1 cut(s) 344
Bse3DI GCAATG 1 cut(s) 110
BseBI CCWGG 1 cut(s) 157
BseDI CCNNGG 1 cut(s) 344
BseGI GGATG 1 cut(s) 406
BseMI GCAATG 1 cut(s) 110
BseMII CTCAG 2 cut(s) 216, 309
BseXI GCAGC 3 cut(s) 44, 250, 405
Bsh1236I CGCG 1 cut(s) 118
BshFI GGCC 1 cut(s) 411
BslFI GGGAC 3 cut(s) 116, 161, 384
BsmAI GTCTC 2 cut(s) 269, 450
BsmFI GGGAC 3 cut(s) 116, 161, 384
BsnI GGCC 1 cut(s) 411
Bso31I GGTCTC 1 cut(s) 450
Bsp143I GATC 1 cut(s) 231
BspACI CCGC 2 cut(s) 116, 267
BspANI GGCC 1 cut(s) 411
BspCNI CTCAG 2 cut(s) 217, 310
BspFNI CGCG 1 cut(s) 118
BspLI GGNNCC 1 cut(s) 433
BspTNI GGTCTC 1 cut(s) 450
BsrDI GCAATG 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 344
BssMI GATC 1 cut(s) 231
BssT1I CCWWGG 1 cut(s) 344
Bst2UI CCWGG 1 cut(s) 157
Bst4CI ACNGT 4 cut(s) 152, 216, 222, 287
Bst6I CTCTTC 1 cut(s) 294
BstBAI YACGTR 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 423
BstDEI CTNAG 2 cut(s) 225, 318
BstF5I GGATG 1 cut(s) 406
BstFNI CGCG 1 cut(s) 118
BstKTI GATC 1 cut(s) 234
BstMAI GTCTC 2 cut(s) 269, 450
BstMBI GATC 1 cut(s) 231
BstMWI GCNNNNNNNGC 2 cut(s) 112, 335
BstNI CCWGG 1 cut(s) 157
BstNSI RCATGY 3 cut(s) 46, 61, 395
BstSCI CCNGG 1 cut(s) 155
BstSFI CTRYAG 1 cut(s) 426
BstUI CGCG 1 cut(s) 118
BstV1I GCAGC 3 cut(s) 44, 250, 405
BstV2I GAAGAC 1 cut(s) 390
BsuI GTATCC 1 cut(s) 214
BsuRI GGCC 1 cut(s) 411
BtsCI GGATG 1 cut(s) 406
Cac8I GCNNGC 1 cut(s) 423
CseI GACGC 1 cut(s) 118
CsiI ACCWGGT 1 cut(s) 155
Csp6I GTAC 1 cut(s) 153
CviAII CATG 3 cut(s) 43, 58, 392
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 2 cut(s) 225, 318
DpnI GATC 1 cut(s) 233
DpnII GATC 1 cut(s) 231
EaeI YGGCCR 1 cut(s) 409
Eam1104I CTCTTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 294
Eco130I CCWWGG 1 cut(s) 344
Eco31I GGTCTC 1 cut(s) 450
EcoRII CCWGG 1 cut(s) 155
EcoT14I CCWWGG 1 cut(s) 344
ErhI CCWWGG 1 cut(s) 344
FaeI CATG 3 cut(s) 46, 61, 395
FaiI YATR 7 cut(s) 11, 27, 44, 59, 257, 393, 408
FaqI GGGAC 3 cut(s) 116, 161, 384
FatI CATG 3 cut(s) 42, 57, 391
Fnu4HI GCNGC 5 cut(s) 33, 116, 264, 267, 419
FokI GGATG 1 cut(s) 413
Fsp4HI GCNGC 5 cut(s) 33, 116, 264, 267, 419
FspBI CTAG 2 cut(s) 365, 462
GluI GCNGC 5 cut(s) 33, 116, 264, 267, 419
HaeIII GGCC 1 cut(s) 411
HgaI GACGC 1 cut(s) 118
Hin1II CATG 3 cut(s) 46, 61, 395
HinfI GANTC 1 cut(s) 277
HphI GGTGA 2 cut(s) 184, 226
Hpy166II GTNNAC 1 cut(s) 476
Hpy188I TCNGA 2 cut(s) 184, 226
Hpy188III TCNNGA 2 cut(s) 53, 453
Hpy8I GTNNAC 1 cut(s) 476
HpyAV CCTTC 1 cut(s) 201
HpyCH4III ACNGT 4 cut(s) 152, 216, 222, 287
HpyCH4IV ACGT 2 cut(s) 85, 373
HpyCH4V TGCA 3 cut(s) 32, 338, 421
HpyF10VI GCNNNNNNNGC 2 cut(s) 112, 335
HpyF3I CTNAG 2 cut(s) 225, 318
HpySE526I ACGT 2 cut(s) 85, 373
Hsp92II CATG 3 cut(s) 46, 61, 395
Kzo9I GATC 1 cut(s) 231
LpnPI CCDG 7 cut(s) 21, 66, 139, 142, 169, 414, 438
Lsp1109I GCAGC 3 cut(s) 44, 250, 405
LweI GCATC 1 cut(s) 362
MabI ACCWGGT 1 cut(s) 155
MaeI CTAG 2 cut(s) 365, 462
MaeII ACGT 2 cut(s) 85, 373
MaeIII GTNAC 3 cut(s) 159, 216, 306
MalI GATC 1 cut(s) 233
MboI GATC 1 cut(s) 231
MboII GAAGA 2 cut(s) 311, 395
MfeI CAATTG 1 cut(s) 357
MluCI AATT 2 cut(s) 88, 357
MlyI GAGTC 1 cut(s) 271
MmeI TCCRAC 1 cut(s) 276
MnlI CCTC 2 cut(s) 73, 313
MspR9I CCNGG 1 cut(s) 157
MunI CAATTG 1 cut(s) 357
MvaI CCWGG 1 cut(s) 157
MvnI CGCG 1 cut(s) 118
MwoI GCNNNNNNNGC 2 cut(s) 112, 335
NdeII GATC 1 cut(s) 231
NlaIII CATG 3 cut(s) 46, 61, 395
NlaIV GGNNCC 1 cut(s) 433
NmuCI GTSAC 2 cut(s) 159, 216
NspI RCATGY 3 cut(s) 46, 61, 395
PciI ACATGT 3 cut(s) 42, 57, 391
PkrI GCNGC 5 cut(s) 34, 117, 265, 268, 420
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
Ppu21I YACGTR 1 cut(s) 86
PscI ACATGT 3 cut(s) 42, 57, 391
Psp6I CCWGG 1 cut(s) 155
PspGI CCWGG 1 cut(s) 155
PspN4I GGNNCC 1 cut(s) 433
PsrI GAACNNNNNNTAC 2 cut(s) 457, 489
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
SatI GCNGC 5 cut(s) 33, 116, 264, 267, 419
Sau3AI GATC 1 cut(s) 231
SchI GAGTC 1 cut(s) 271
ScrFI CCNGG 1 cut(s) 157
SetI ASST 8 cut(s) 88, 161, 189, 252, 319, 376, 427, 433
SexAI ACCWGGT 1 cut(s) 155
SfaNI GCATC 1 cut(s) 362
SfcI CTRYAG 1 cut(s) 426
Sse9I AATT 2 cut(s) 88, 357
SsiI CCGC 2 cut(s) 116, 267
SspMI CTAG 2 cut(s) 365, 462
StyD4I CCNGG 1 cut(s) 155
StyI CCWWGG 1 cut(s) 344
TaaI ACNGT 4 cut(s) 152, 216, 222, 287
TaiI ACGT 2 cut(s) 88, 376
TasI AATT 2 cut(s) 88, 357
TauI GCSGC 2 cut(s) 118, 269
TseFI GTSAC 2 cut(s) 159, 216
TseI GCWGC 3 cut(s) 32, 263, 418
Tsp45I GTSAC 2 cut(s) 159, 216
TspDTI ATGAA 1 cut(s) 128
XceI RCATGY 3 cut(s) 46, 61, 395
XspI CTAG 2 cut(s) 365, 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.