FvH4_3g22970
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003638
Physical Location & Seq
Reverse (-)
16105950 .. 16108566
2617 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g22970.t1

Sequence Viewer

Length: 1605 bp
ATGGCATACAATGGTAACAATGACATCAATGGCAATGCCTTGTACAGCGAGGGAAGCCCCTCGGAACTGAGCTGCGGATTAATGGAGGGCAATAATATGGGGCTGAAGAAAGGTCCATGGACGGCGGTGGAGGATCGAATTCTGATGGAGTACGTGAGCAAACACGGCGAGGGGAACTGGAACGCGGTGCAGAGGAATTCCGGGCTCAAGCGTTGCGGCAAGAGTTGCAGGCTCCGGTGGGCTAATCATCTCCGCCCTAATTTGAAGAAAGGTCAATTCACACCCGAGGAAGAGAGGCTCATTCTTGAGCTCCACGCCAAATACGGCAACAAATGGGCACGCATGGCCTCTCAGTTACCTGGACGAACAGATAATGAGATTAAGAATTACTGGAACACAAGGGTGAAGAAGCGATTACGCAAAGGTCTTCCACTATATCCTCAAGACATTAACCCATCCAAACGAGTATGCCATTCATATTCTCATTCCTATGATGAAAACACAATGAGCATTCCAACAGGACTAAAACAACTTGTAACCAGCACAATGCCACAGACAGACACTAATTTCAGCTTCCAATCACATCCCTCGTCATCCCAAAACCAAACCCAACTCCCTCCCCGCCCCTCCCAAAACCAGCACAACTCCACTTTCAATCATTCCCTCCCTCTTTATGATCCCACCACCTCGATGCCCTCGTTTAACTTCCACCACCCTGCTCAAATGCTCGGAACCCCGTTAGGCTACAAACGATACCAAGAAGATATTGGGTTCTCGCCTCCTATTTCCCCAACTCGACAAAGAAATAGCTCCATTTTGCGAACCACCTCCATGCCCGATATTGCTTCCTATCAACAGTTTGCAACAGGCACCAACTCGATGTCTGACATCTTCTCCTTTCAGTTCCAGCTGCAGACTCAAACACCACAGCTCCCTTCAAGCCAAGCATCTCATACTCGGTCGTTGTCAGATATCACCACCACCAGTCATGCCAACTTCATAAATGCGACTCATAGCAGTGATGGGTTTTTGGAGCAGTTGTTGCAAGAAGCTGAGAGATTTGGTTATGGTTCACATCCAATTAGGAAACAAATTGGCGGTCAGTTGGATTCATCTGATCATGAAAAGAGTTATGCCTTCGATGGATATGGTCACTCACTGGCTTCAACAGCCATGGATAGCTCTTTATTAGAAATGAAACCAACCCAGGATCATGAGCAGATGAACTCCATACCCAAGTACTTGGCGAAGTTGTTCAGTTTCAACTCTTCGACGGAGCTGGTGCCCAACTCGAACGATGGGGAGAGTACAGAACTACCTAATAGCTCTTCATTAGAAATGAAACCAACTCATCAGGATCATGATGATGAGCACATAAACTCCATACCCAAATACTTGGCGAAGTTGTTCAGTTTCAACCTATCCACGGATCAGGCGGTGCCCAATTCGTACAATGGTGAGAGTACGAAACTGCCTAATAGTCAGACTTCTGGAGTAACAGAGGGTAGTCATTTGGAGTTTGACATGCAACAGCGTATGGATTCATTCTTCCCGGCAGCTAACTCTTGGGACAACTTGGCTGAAACCTCAGTGGAGGTATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

535

Amino Acids

59.94

Weight (kDa)

6.31

Isoelectric Point (pI)

45.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 37 - 84 1.4e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 40 - 99 1.3e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 90 - 133 1.5e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 93 - 141 8.8e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 869, 1282, 1438
AccII CGCG 1 cut(s) 185
AciI CCGC 8 cut(s) 75, 125, 185, 216, 253, 622, 1098, 1436
AclWI GGATC 5 cut(s) 141, 671, 1218, 1365, 1437
AcsI RAATTY 2 cut(s) 138, 196
AcuI CTGAAG 1 cut(s) 125
AfaI GTAC 6 cut(s) 44, 152, 1241, 1309, 1451, 1465
AfiI CCNNNNNNNGG 1 cut(s) 1426
AgsI TTSAA 6 cut(s) 265, 655, 939, 1167, 1264, 1417
AjnI CCWGG 2 cut(s) 358, 1206
AleI CACNNNNGTG 1 cut(s) 401
Alw21I GWGCWC 2 cut(s) 312, 1374
AlwI GGATC 5 cut(s) 141, 671, 1218, 1365, 1437
Ama87I CYCGRG 1 cut(s) 284
AoxI GGCC 1 cut(s) 345
ApeKI GCWGC 3 cut(s) 72, 910, 1556
ApoI RAATTY 2 cut(s) 138, 196
ArsI GACNNNNNNTTYG 2 cut(s) 1084, 1116
AseI ATTAAT 1 cut(s) 80
Asp700I GAANNNNTTC 2 cut(s) 1253, 1406
AspS9I GGNCC 1 cut(s) 113
AsuC2I CCSGG 2 cut(s) 202, 1553
AsuHPI GGTGA 3 cut(s) 415, 967, 1469
AvaI CYCGRG 1 cut(s) 284
AvaII GGWCC 1 cut(s) 113
BaeGI GKGCMC 3 cut(s) 340, 1287, 1443
BanI GGYRCC 3 cut(s) 869, 1282, 1438
BanII GRGCYC 2 cut(s) 207, 312
BbsI GAAGAC 1 cut(s) 419
Bbv12I GWGCWC 2 cut(s) 312, 1374
BbvI GCAGC 3 cut(s) 59, 897, 1568
BccI CCATC 5 cut(s) 139, 463, 1016, 1136, 1292
BceAI ACGGC 3 cut(s) 138, 181, 340
BciT130I CCWGG 2 cut(s) 360, 1208
BclI TGATCA 1 cut(s) 1117
BcnI CCSGG 2 cut(s) 202, 1553
BfmI CTRYAG 1 cut(s) 911
BisI GCNGC 4 cut(s) 73, 217, 911, 1557
BlsI GCNGC 4 cut(s) 74, 218, 912, 1558
BmcAI AGTACT 1 cut(s) 1241
Bme1390I CCNGG 4 cut(s) 202, 360, 1208, 1553
Bme18I GGWCC 1 cut(s) 113
BmeT110I CYCGRG 1 cut(s) 284
BmgT120I GGNCC 1 cut(s) 113
BmiI GGNNCC 5 cut(s) 233, 733, 871, 1284, 1440
BmrFI CCNGG 4 cut(s) 202, 360, 1208, 1553
BmsI GCATC 2 cut(s) 681, 956
BpiI GAAGAC 1 cut(s) 419
BpmI CTGGAG 1 cut(s) 1512
BpuEI CTTGAG 3 cut(s) 191, 326, 426
BpuMI CCSGG 2 cut(s) 202, 1553
BsaAI YACGTR 1 cut(s) 154
BsaJI CCNNGG 6 cut(s) 60, 116, 285, 1173, 1206, 1425
BsaWI WCCGGW 1 cut(s) 234
BsaXI ACNNNNNCTCC 8 cut(s) 878, 908, 915, 945, 1025, 1055, 1364, 1394
Bsc4I CCNNNNNNNGG 1 cut(s) 1426
Bse1I ACTGG 4 cut(s) 182, 395, 984, 1164
Bse3DI GCAATG 1 cut(s) 40
BseBI CCWGG 2 cut(s) 360, 1208
BseDI CCNNGG 6 cut(s) 60, 116, 285, 1173, 1206, 1425
BseGI GGATG 4 cut(s) 455, 583, 593, 1075
BseLI CCNNNNNNNGG 1 cut(s) 1426
BseMI GCAATG 1 cut(s) 40
BseMII CTCAG 4 cut(s) 59, 365, 1044, 1602
BseNI ACTGG 4 cut(s) 182, 395, 984, 1164
BseSI GKGCMC 3 cut(s) 340, 1287, 1443
BseXI GCAGC 3 cut(s) 59, 897, 1568
BsgI GTGCAG 1 cut(s) 209
Bsh1236I CGCG 1 cut(s) 185
Bsh1285I CGRYCG 1 cut(s) 962
BshFI GGCC 1 cut(s) 347
BshNI GGYRCC 3 cut(s) 869, 1282, 1438
BsiEI CGRYCG 1 cut(s) 962
BsiHKAI GWGCWC 2 cut(s) 312, 1374
BsiHKCI CYCGRG 1 cut(s) 284
BsiSI CCGG 3 cut(s) 201, 235, 1553
BslFI GGGAC 1 cut(s) 1583
BslI CCNNNNNNNGG 1 cut(s) 1426
BsmFI GGGAC 1 cut(s) 1583
BsmI GAATGC 1 cut(s) 510
BsnI GGCC 1 cut(s) 347
BsoBI CYCGRG 1 cut(s) 284
Bsp1286I GDGCHC 6 cut(s) 207, 312, 340, 1287, 1374, 1443
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 6 cut(s) 133, 676, 1117, 1210, 1357, 1429
Bsp19I CCATGG 2 cut(s) 116, 1173
BspACI CCGC 8 cut(s) 75, 125, 185, 216, 253, 622, 1098, 1436
BspANI GGCC 1 cut(s) 347
BspCNI CTCAG 4 cut(s) 60, 364, 1045, 1601
BspFNI CGCG 1 cut(s) 185
BspHI TCATGA 3 cut(s) 1120, 1213, 1360
BspLI GGNNCC 5 cut(s) 233, 733, 871, 1284, 1440
BspMAI CTGCAG 1 cut(s) 915
BspPI GGATC 5 cut(s) 141, 671, 1218, 1365, 1437
BspQI GCTCTTC 1 cut(s) 1333
BspT107I GGYRCC 3 cut(s) 869, 1282, 1438
BsrDI GCAATG 1 cut(s) 40
BsrGI TGTACA 1 cut(s) 42
BsrI ACTGG 4 cut(s) 182, 395, 984, 1164
BssECI CCNNGG 6 cut(s) 60, 116, 285, 1173, 1206, 1425
BssMI GATC 6 cut(s) 133, 676, 1117, 1210, 1357, 1429
BssT1I CCWWGG 2 cut(s) 116, 1173
Bst2UI CCWGG 2 cut(s) 360, 1208
Bst4CI ACNGT 1 cut(s) 858
Bst6I CTCTTC 3 cut(s) 285, 1273, 1333
BstAPI GCANNNNNTGC 2 cut(s) 225, 1042
BstAUI TGTACA 1 cut(s) 42
BstBAI YACGTR 1 cut(s) 154
BstC8I GCNNGC 2 cut(s) 230, 340
BstDEI CTNAG 5 cut(s) 68, 351, 1053, 1588, 1602
BstDSI CCRYGG 3 cut(s) 116, 1173, 1425
BstF5I GGATG 4 cut(s) 455, 583, 593, 1075
BstFNI CGCG 1 cut(s) 185
BstKTI GATC 6 cut(s) 136, 679, 1120, 1213, 1360, 1432
BstMBI GATC 6 cut(s) 133, 676, 1117, 1210, 1357, 1429
BstMCI CGRYCG 1 cut(s) 962
BstMWI GCNNNNNNNGC 6 cut(s) 54, 165, 225, 344, 1042, 1169
BstNI CCWGG 2 cut(s) 360, 1208
BstNSI RCATGY 1 cut(s) 1528
BstSCI CCNGG 4 cut(s) 200, 358, 1206, 1551
BstSFI CTRYAG 1 cut(s) 911
BstSLI GKGCMC 3 cut(s) 340, 1287, 1443
BstUI CGCG 1 cut(s) 185
BstV1I GCAGC 3 cut(s) 59, 897, 1568
BstV2I GAAGAC 1 cut(s) 419
BstXI CCANNNNNNTGG 2 cut(s) 1243, 1396
BsuRI GGCC 1 cut(s) 347
BtgI CCRYGG 3 cut(s) 116, 1173, 1425
BtsCI GGATG 4 cut(s) 455, 583, 593, 1075
BtsI GCAGTG 1 cut(s) 1024
BtsIMutI CAGTG 3 cut(s) 1024, 1157, 1596
Cac8I GCNNGC 2 cut(s) 230, 340
CciI TCATGA 3 cut(s) 1120, 1213, 1360
Cfr13I GGNCC 1 cut(s) 113
Csp6I GTAC 6 cut(s) 43, 151, 1240, 1308, 1450, 1464
CviAII CATG 9 cut(s) 117, 343, 832, 989, 1121, 1174, 1214, 1361, 1525
CviQI GTAC 6 cut(s) 43, 151, 1240, 1308, 1450, 1464
DdeI CTNAG 5 cut(s) 68, 351, 1053, 1588, 1602
DpnI GATC 6 cut(s) 135, 678, 1119, 1212, 1359, 1431
DpnII GATC 6 cut(s) 133, 676, 1117, 1210, 1357, 1429
Eam1104I CTCTTC 3 cut(s) 285, 1273, 1333
EarI CTCTTC 3 cut(s) 285, 1273, 1333
EciI GGCGGA 1 cut(s) 242
Ecl136II GAGCTC 1 cut(s) 310
Eco130I CCWWGG 2 cut(s) 116, 1173
Eco24I GRGCYC 2 cut(s) 207, 312
Eco32I GATATC 1 cut(s) 973
Eco47I GGWCC 1 cut(s) 113
Eco53kI GAGCTC 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 125
Eco88I CYCGRG 1 cut(s) 284
EcoICRI GAGCTC 1 cut(s) 310
EcoRI GAATTC 2 cut(s) 138, 196
EcoRII CCWGG 2 cut(s) 358, 1206
EcoRV GATATC 1 cut(s) 973
EcoT14I CCWWGG 2 cut(s) 116, 1173
EcoT38I GRGCYC 2 cut(s) 207, 312
ErhI CCWWGG 2 cut(s) 116, 1173
FaeI CATG 9 cut(s) 120, 346, 835, 992, 1124, 1177, 1217, 1364, 1528
FaqI GGGAC 1 cut(s) 1583
FatI CATG 9 cut(s) 116, 342, 831, 988, 1120, 1173, 1213, 1360, 1524
FauI CCCGC 1 cut(s) 629
FbaI TGATCA 1 cut(s) 1117
Fnu4HI GCNGC 4 cut(s) 73, 217, 911, 1557
FokI GGATG 4 cut(s) 442, 570, 580, 1062
FriOI GRGCYC 2 cut(s) 207, 312
Fsp4HI GCNGC 4 cut(s) 73, 217, 911, 1557
GluI GCNGC 4 cut(s) 73, 217, 911, 1557
GsuI CTGGAG 1 cut(s) 1512
HaeIII GGCC 1 cut(s) 347
HapII CCGG 3 cut(s) 201, 235, 1553
Hin1II CATG 9 cut(s) 120, 346, 835, 992, 1124, 1177, 1217, 1364, 1528
HinfI GANTC 4 cut(s) 916, 1009, 1109, 1541
HpaII CCGG 3 cut(s) 201, 235, 1553
HphI GGTGA 3 cut(s) 415, 967, 1469
Hpy166II GTNNAC 1 cut(s) 1073
Hpy188I TCNGA 7 cut(s) 64, 144, 731, 886, 970, 1117, 1485
Hpy188III TCNNGA 7 cut(s) 305, 443, 1121, 1214, 1355, 1361, 1491
Hpy8I GTNNAC 1 cut(s) 1073
Hpy99I CGWCG 1 cut(s) 1276
HpyAV CCTTC 2 cut(s) 945, 1147
HpyCH4III ACNGT 1 cut(s) 858
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 6 cut(s) 190, 228, 863, 913, 1045, 1528
HpyF10VI GCNNNNNNNGC 6 cut(s) 54, 165, 225, 344, 1042, 1169
HpyF3I CTNAG 5 cut(s) 68, 351, 1053, 1588, 1602
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 9 cut(s) 120, 346, 835, 992, 1124, 1177, 1217, 1364, 1528
Ksp22I TGATCA 1 cut(s) 1117
Kzo9I GATC 6 cut(s) 133, 676, 1117, 1210, 1357, 1429
LguI GCTCTTC 1 cut(s) 1333
LmnI GCTCC 6 cut(s) 237, 315, 815, 936, 1033, 1276
Lsp1109I GCAGC 3 cut(s) 59, 897, 1568
LweI GCATC 2 cut(s) 681, 956
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 5 cut(s) 14, 354, 535, 1151, 1495
MalI GATC 6 cut(s) 135, 678, 1119, 1212, 1359, 1431
MboI GATC 6 cut(s) 133, 676, 1117, 1210, 1357, 1429
MhlI GDGCHC 6 cut(s) 207, 312, 340, 1287, 1374, 1443
MluCI AATT 9 cut(s) 138, 196, 259, 275, 385, 565, 1080, 1092, 1444
MlyI GAGTC 2 cut(s) 910, 1003
MmeI TCCRAC 2 cut(s) 539, 1086
MroXI GAANNNNTTC 2 cut(s) 1253, 1406
MseI TTAA 4 cut(s) 80, 381, 450, 702
MslI CAYNNNNRTG 6 cut(s) 401, 489, 689, 830, 1017, 1365
MspA1I CMGCKG 1 cut(s) 910
MspI CCGG 3 cut(s) 201, 235, 1553
MspR9I CCNGG 4 cut(s) 202, 360, 1208, 1553
Mva1269I GAATGC 1 cut(s) 510
MvaI CCWGG 2 cut(s) 360, 1208
MvnI CGCG 1 cut(s) 185
MwoI GCNNNNNNNGC 6 cut(s) 54, 165, 225, 344, 1042, 1169
NciI CCSGG 2 cut(s) 202, 1553
NcoI CCATGG 2 cut(s) 116, 1173
NdeII GATC 6 cut(s) 133, 676, 1117, 1210, 1357, 1429
NlaIII CATG 9 cut(s) 120, 346, 835, 992, 1124, 1177, 1217, 1364, 1528
NlaIV GGNNCC 5 cut(s) 233, 733, 871, 1284, 1440
NmuCI GTSAC 1 cut(s) 1151
NspI RCATGY 1 cut(s) 1528
OliI CACNNNNGTG 1 cut(s) 401
PagI TCATGA 3 cut(s) 1120, 1213, 1360
PciSI GCTCTTC 1 cut(s) 1333
PcsI WCGNNNNNNNCGW 1 cut(s) 695
PctI GAATGC 1 cut(s) 510
PdmI GAANNNNTTC 2 cut(s) 1253, 1406
PfeI GAWTC 2 cut(s) 1109, 1541
PkrI GCNGC 4 cut(s) 74, 218, 912, 1558
PleI GAGTC 2 cut(s) 910, 1003
PpsI GAGTC 2 cut(s) 910, 1003
Ppu21I YACGTR 1 cut(s) 154
PshBI ATTAAT 1 cut(s) 80
Psp124BI GAGCTC 1 cut(s) 312
Psp6I CCWGG 2 cut(s) 358, 1206
PspGI CCWGG 2 cut(s) 358, 1206
PspN4I GGNNCC 5 cut(s) 233, 733, 871, 1284, 1440
PspPI GGNCC 1 cut(s) 113
PstI CTGCAG 1 cut(s) 915
PvuII CAGCTG 1 cut(s) 910
RsaI GTAC 6 cut(s) 44, 152, 1241, 1309, 1451, 1465
RsaNI GTAC 6 cut(s) 43, 151, 1240, 1308, 1450, 1464
RseI CAYNNNNRTG 6 cut(s) 401, 489, 689, 830, 1017, 1365
SacI GAGCTC 1 cut(s) 312
SapI GCTCTTC 1 cut(s) 1333
SaqAI TTAA 4 cut(s) 80, 381, 450, 702
SatI GCNGC 4 cut(s) 73, 217, 911, 1557
Sau3AI GATC 6 cut(s) 133, 676, 1117, 1210, 1357, 1429
Sau96I GGNCC 1 cut(s) 113
ScaI AGTACT 1 cut(s) 1241
SchI GAGTC 2 cut(s) 910, 1003
ScrFI CCNGG 4 cut(s) 202, 360, 1208, 1553
SduI GDGCHC 6 cut(s) 207, 312, 340, 1287, 1374, 1443
SfaNI GCATC 2 cut(s) 681, 956
SfcI CTRYAG 1 cut(s) 911
SinI GGWCC 1 cut(s) 113
SmiMI CAYNNNNRTG 6 cut(s) 401, 489, 689, 830, 1017, 1365
SmlI CTYRAG 3 cut(s) 206, 305, 441
SmoI CTYRAG 3 cut(s) 206, 305, 441
Sse9I AATT 9 cut(s) 138, 196, 259, 275, 385, 565, 1080, 1092, 1444
SsiI CCGC 8 cut(s) 75, 125, 185, 216, 253, 622, 1098, 1436
SstI GAGCTC 1 cut(s) 312
StyD4I CCNGG 4 cut(s) 200, 358, 1206, 1551
StyI CCWWGG 2 cut(s) 116, 1173
TaaI ACNGT 1 cut(s) 858
TaiI ACGT 1 cut(s) 156
TaqI TCGA 7 cut(s) 136, 689, 796, 878, 1140, 1271, 1292
TaqII GACCGA 1 cut(s) 948
TasI AATT 9 cut(s) 138, 196, 259, 275, 385, 565, 1080, 1092, 1444
TatI WGTACW 3 cut(s) 42, 1239, 1307
TauI GCSGC 1 cut(s) 219
TfiI GAWTC 2 cut(s) 1109, 1541
Tru1I TTAA 4 cut(s) 80, 381, 450, 702
Tru9I TTAA 4 cut(s) 80, 381, 450, 702
TscAI CASTG 3 cut(s) 1024, 1164, 1596
TseFI GTSAC 1 cut(s) 1151
TseI GCWGC 3 cut(s) 72, 910, 1556
Tsp45I GTSAC 1 cut(s) 1151
TspGWI ACGGA 2 cut(s) 1289, 1442
TspRI CASTG 3 cut(s) 1024, 1164, 1596
VpaK11BI GGWCC 1 cut(s) 113
VspI ATTAAT 1 cut(s) 80
XapI RAATTY 2 cut(s) 138, 196
XceI RCATGY 1 cut(s) 1528
XcmI CCANNNNNNNNNTGG 1 cut(s) 764
XmnI GAANNNNTTC 2 cut(s) 1253, 1406
ZrmI AGTACT 1 cut(s) 1241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.