Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8296705.1

Orthogroup ID

OG0003638

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 867

Gene Structure 867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8296705.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atggcacataatggtatcaatgacatcaatggcactgccatgtacggcgagggaaacccctcggaattgagctgcgtatttatggggggcaataatatgggcctgaggaaaggtccatggacggcggtggaggatcgaattctgatggagtacgtgagcaaacagggcgaagggaactggaattcggtgcaatggaattccggactcaagcgttgcggcaagagttgcaggctccggtgggctaatcatctccgccctaatttgaagaaaggtgcattcacacccgaggaagagagactcattcttgaactccacgccaaatacggcaacaaatgggcacgcatggcctctcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

118

Amino Acids

13.31

Weight (kDa)

9.33

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26930
fragaria_vesca	FvH4_3g22960 FvH4_3g22960 FvH4_3g22960 FvH4_3g22960 FvH4_3g22970 FvH4_3g22970
malus_domestica	MD05G1136100.v1.1 MD11G1215600.v1.1 MD11G1216000.v1.1
prunus_persica	Prupe.4G215500_v2.0.a1 Prupe.4G215500_v2.0.a1 Prupe.4G215600_v2.0.a1
pyrus_communis	pycom11g19020
rosa_chinensis	RchiOBHm_Chr5g0040211 RchiOBHm_Chr5g0040281
rosa_laevigata	RLG00000033968 RLG00000033970
rosa_multiflora	Rmu_co8296705.1_g000001 Rmu_co8344811.1_g000001 Rmu_sc0002908.1_g000007 Rmu_sc0010162.1_g000003 Rmu_sc0014485.1_g000006
rosa_roxburghii	Rroxscaffold_1G00041020 Rroxscaffold_1G00041030
rosa_rugosa	Rorug05G0184400 Rorug05G0184500
rosa_samantha	Rh5AG271400 Rh5AG271500 Rh5BG274600 Rh5BG275400 Rh5CG307600 Rh5DG282900 Rh5DG283600
rosa_wichuraiana	Rw5G025380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	200
AciI	CCGC	3 cut(s)	125, 216, 253
AclWI	GGATC	1 cut(s)	141
AcsI	RAATTY	3 cut(s)	138, 181, 196
AfaI	GTAC	2 cut(s)	44, 152
AgsI	TTSAA	2 cut(s)	265, 308
AluBI	AGCT	1 cut(s)	72
AluI	AGCT	1 cut(s)	72
Alw26I	GTCTC	1 cut(s)	289
AlwI	GGATC	1 cut(s)	141
Ama87I	CYCGRG	1 cut(s)	284
Aor13HI	TCCGGA	1 cut(s)	200
AoxI	GGCC	2 cut(s)	100, 345
ApeKI	GCWGC	1 cut(s)	72
ApoI	RAATTY	3 cut(s)	138, 181, 196
AspS9I	GGNCC	2 cut(s)	100, 113
AvaI	CYCGRG	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	113
AxyI	CCTNAGG	1 cut(s)	104
BaeGI	GKGCMC	1 cut(s)	340
BbvI	GCAGC	1 cut(s)	59
BccI	CCATC	1 cut(s)	139
BceAI	ACGGC	3 cut(s)	61, 138, 340
BcoDI	GTCTC	1 cut(s)	289
BisI	GCNGC	2 cut(s)	73, 217
BlsI	GCNGC	2 cut(s)	74, 218
Bme18I	GGWCC	1 cut(s)	113
BmeT110I	CYCGRG	1 cut(s)	284
BmgT120I	GGNCC	2 cut(s)	100, 113
BmiI	GGNNCC	1 cut(s)	233
BpuEI	CTTGAG	1 cut(s)	191
BsaAI	YACGTR	1 cut(s)	154
BsaJI	CCNNGG	3 cut(s)	60, 116, 285
BsaWI	WCCGGW	2 cut(s)	200, 234
Bse1I	ACTGG	1 cut(s)	182
Bse21I	CCTNAGG	1 cut(s)	104
Bse3DI	GCAATG	1 cut(s)	197
BseAI	TCCGGA	1 cut(s)	200
BseDI	CCNNGG	3 cut(s)	60, 116, 285
BseMI	GCAATG	1 cut(s)	197
BseMII	CTCAG	1 cut(s)	95
BseNI	ACTGG	1 cut(s)	182
BseSI	GKGCMC	1 cut(s)	340
BseXI	GCAGC	1 cut(s)	59
BshFI	GGCC	2 cut(s)	102, 347
BsiHKCI	CYCGRG	1 cut(s)	284
BsiSI	CCGG	2 cut(s)	201, 235
BsmAI	GTCTC	1 cut(s)	289
BsmI	GAATGC	1 cut(s)	275
BsnI	GGCC	2 cut(s)	102, 347
BsoBI	CYCGRG	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	340
Bsp13I	TCCGGA	1 cut(s)	200
Bsp143I	GATC	1 cut(s)	133
Bsp19I	CCATGG	1 cut(s)	116
BspACI	CCGC	3 cut(s)	125, 216, 253
BspANI	GGCC	2 cut(s)	102, 347
BspCNI	CTCAG	1 cut(s)	96
BspEI	TCCGGA	1 cut(s)	200
BspLI	GGNNCC	1 cut(s)	233
BspPI	GGATC	1 cut(s)	141
BsrDI	GCAATG	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	182
BssECI	CCNNGG	3 cut(s)	60, 116, 285
BssMI	GATC	1 cut(s)	133
BssT1I	CCWWGG	1 cut(s)	116
Bst6I	CTCTTC	1 cut(s)	285
BstAPI	GCANNNNNTGC	1 cut(s)	225
BstBAI	YACGTR	1 cut(s)	154
BstC8I	GCNNGC	2 cut(s)	230, 340
BstDEI	CTNAG	2 cut(s)	104, 351
BstDSI	CCRYGG	1 cut(s)	116
BstKTI	GATC	1 cut(s)	136
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	1 cut(s)	133
BstMWI	GCNNNNNNNGC	3 cut(s)	165, 225, 344
BstSLI	GKGCMC	1 cut(s)	340
BstV1I	GCAGC	1 cut(s)	59
Bsu36I	CCTNAGG	1 cut(s)	104
BsuRI	GGCC	2 cut(s)	102, 347
BtgI	CCRYGG	1 cut(s)	116
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	2 cut(s)	230, 340
Cfr13I	GGNCC	2 cut(s)	100, 113
Csp6I	GTAC	2 cut(s)	43, 151
CviAII	CATG	3 cut(s)	40, 117, 343
CviJI	RGCY	5 cut(s)	72, 102, 232, 242, 347
CviKI_1	RGCY	5 cut(s)	72, 102, 232, 242, 347
CviQI	GTAC	2 cut(s)	43, 151
DdeI	CTNAG	2 cut(s)	104, 351
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
EciI	GGCGGA	1 cut(s)	242
Eco130I	CCWWGG	1 cut(s)	116
Eco47I	GGWCC	1 cut(s)	113
Eco81I	CCTNAGG	1 cut(s)	104
Eco88I	CYCGRG	1 cut(s)	284
EcoRI	GAATTC	3 cut(s)	138, 181, 196
EcoT14I	CCWWGG	1 cut(s)	116
ErhI	CCWWGG	1 cut(s)	116
FaeI	CATG	3 cut(s)	43, 120, 346
FaiI	YATR	6 cut(s)	9, 41, 83, 98, 118, 344
FatI	CATG	3 cut(s)	39, 116, 342
Fnu4HI	GCNGC	2 cut(s)	73, 217
Fsp4HI	GCNGC	2 cut(s)	73, 217
GluI	GCNGC	2 cut(s)	73, 217
HaeIII	GGCC	2 cut(s)	102, 347
HapII	CCGG	2 cut(s)	201, 235
Hin1II	CATG	3 cut(s)	43, 120, 346
HinfI	GANTC	2 cut(s)	204, 297
HpaII	CCGG	2 cut(s)	201, 235
Hpy188I	TCNGA	2 cut(s)	64, 144
Hpy188III	TCNNGA	2 cut(s)	201, 305
HpyAV	CCTTC	1 cut(s)	164
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	3 cut(s)	190, 228, 275
HpyF10VI	GCNNNNNNNGC	3 cut(s)	165, 225, 344
HpyF3I	CTNAG	2 cut(s)	104, 351
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	3 cut(s)	43, 120, 346
Kpn2I	TCCGGA	1 cut(s)	200
Kzo9I	GATC	1 cut(s)	133
LmnI	GCTCC	1 cut(s)	237
LpnPI	CCDG	6 cut(s)	116, 149, 163, 214, 214, 248
Lsp1109I	GCAGC	1 cut(s)	59
MaeII	ACGT	1 cut(s)	153
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	2 cut(s)	277, 302
MhlI	GDGCHC	1 cut(s)	340
MluCI	AATT	5 cut(s)	65, 138, 181, 196, 259
MlyI	GAGTC	2 cut(s)	198, 291
MnlI	CCTC	5 cut(s)	43, 70, 99, 124, 280
MroI	TCCGGA	1 cut(s)	200
MslI	CAYNNNNRTG	1 cut(s)	38
MspI	CCGG	2 cut(s)	201, 235
Mva1269I	GAATGC	1 cut(s)	275
MwoI	GCNNNNNNNGC	3 cut(s)	165, 225, 344
NcoI	CCATGG	1 cut(s)	116
NdeII	GATC	1 cut(s)	133
NlaIII	CATG	3 cut(s)	43, 120, 346
NlaIV	GGNNCC	1 cut(s)	233
PctI	GAATGC	1 cut(s)	275
PkrI	GCNGC	2 cut(s)	74, 218
PleI	GAGTC	2 cut(s)	198, 291
PpsI	GAGTC	2 cut(s)	198, 291
Ppu21I	YACGTR	1 cut(s)	154
PspN4I	GGNNCC	1 cut(s)	233
PspPI	GGNCC	2 cut(s)	100, 113
RsaI	GTAC	2 cut(s)	44, 152
RsaNI	GTAC	2 cut(s)	43, 151
RseI	CAYNNNNRTG	1 cut(s)	38
SatI	GCNGC	2 cut(s)	73, 217
Sau3AI	GATC	1 cut(s)	133
Sau96I	GGNCC	2 cut(s)	100, 113
SchI	GAGTC	2 cut(s)	198, 291
SduI	GDGCHC	1 cut(s)	340
SetI	ASST	4 cut(s)	74, 115, 156, 274
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	5 cut(s)	65, 138, 181, 196, 259
SsiI	CCGC	3 cut(s)	125, 216, 253
StyI	CCWWGG	1 cut(s)	116
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	1 cut(s)	136
TasI	AATT	5 cut(s)	65, 138, 181, 196, 259
TauI	GCSGC	1 cut(s)	219
TscAI	CASTG	1 cut(s)	40
TseI	GCWGC	1 cut(s)	72
TspRI	CASTG	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	113
XapI	RAATTY	3 cut(s)	138, 181, 196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.