Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003638

Physical Location & Seq

Genomic Coordinates Reverse (-)

34895561 .. 34895893

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG283600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGTACGGCGAGGGAAACCCCTCGGAATTGAGCTGCGTATTTATGGGGGGCAATAATATGGGCCTGAGGAAAGGTCCATGGACGGCGGTGGAGGATCGAATTCTGATGGAGTACGTGAGCAAACAGGGCGAAGGGAACTGGAATTCGGTGCAATGGAATTCCGGGCTCAAGCGTTGCGGCAAGAGTTGCAGGCTCCGGTGGGCTAATCATCTCCGCCCTAATTTGAAGAAAGGTGCATTCACACCCGAGGAAGAGAGACTCATTCTTGAACTCCACGCCAAATACGGCAACAAATGGGCACGCATGGCCTCTCAGGTAATTAAATTTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

110

Amino Acids

12.55

Weight (kDa)

9.62

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	24 - 71	5.1e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	27 - 86	3.2e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	77 - 106	9e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26930
fragaria_vesca	FvH4_3g22960 FvH4_3g22960 FvH4_3g22960 FvH4_3g22960 FvH4_3g22970 FvH4_3g22970
malus_domestica	MD05G1136100.v1.1 MD11G1215600.v1.1 MD11G1216000.v1.1
prunus_persica	Prupe.4G215500_v2.0.a1 Prupe.4G215500_v2.0.a1 Prupe.4G215600_v2.0.a1
pyrus_communis	pycom11g19020
rosa_chinensis	RchiOBHm_Chr5g0040211 RchiOBHm_Chr5g0040281
rosa_laevigata	RLG00000033968 RLG00000033970
rosa_multiflora	Rmu_co8296705.1_g000001 Rmu_co8344811.1_g000001 Rmu_sc0002908.1_g000007 Rmu_sc0010162.1_g000003 Rmu_sc0014485.1_g000006
rosa_roxburghii	Rroxscaffold_1G00041020 Rroxscaffold_1G00041030
rosa_rugosa	Rorug05G0184400 Rorug05G0184500
rosa_samantha	Rh5AG271400 Rh5AG271500 Rh5BG274600 Rh5BG275400 Rh5CG307600 Rh5DG282900 Rh5DG283600
rosa_wichuraiana	Rw5G025380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	86, 177, 214
AclWI	GGATC	1 cut(s)	102
AcsI	RAATTY	4 cut(s)	99, 142, 157, 323
AfaI	GTAC	2 cut(s)	5, 113
AgsI	TTSAA	2 cut(s)	226, 269
AluBI	AGCT	1 cut(s)	33
AluI	AGCT	1 cut(s)	33
Alw26I	GTCTC	1 cut(s)	250
AlwI	GGATC	1 cut(s)	102
Ama87I	CYCGRG	1 cut(s)	245
AoxI	GGCC	2 cut(s)	61, 306
ApeKI	GCWGC	1 cut(s)	33
ApoI	RAATTY	4 cut(s)	99, 142, 157, 323
AspS9I	GGNCC	2 cut(s)	61, 74
AsuC2I	CCSGG	1 cut(s)	163
AvaI	CYCGRG	1 cut(s)	245
AvaII	GGWCC	1 cut(s)	74
AxyI	CCTNAGG	1 cut(s)	65
BaeGI	GKGCMC	1 cut(s)	301
BanII	GRGCYC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	20
BccI	CCATC	1 cut(s)	100
BceAI	ACGGC	3 cut(s)	22, 99, 301
BcnI	CCSGG	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	250
BisI	GCNGC	2 cut(s)	34, 178
BlsI	GCNGC	2 cut(s)	35, 179
Bme1390I	CCNGG	1 cut(s)	163
Bme18I	GGWCC	1 cut(s)	74
BmeT110I	CYCGRG	1 cut(s)	245
BmgT120I	GGNCC	2 cut(s)	61, 74
BmiI	GGNNCC	1 cut(s)	194
BmrFI	CCNGG	1 cut(s)	163
BpuEI	CTTGAG	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	163
BsaAI	YACGTR	1 cut(s)	115
BsaJI	CCNNGG	3 cut(s)	21, 77, 246
BsaWI	WCCGGW	1 cut(s)	195
Bse1I	ACTGG	1 cut(s)	143
Bse21I	CCTNAGG	1 cut(s)	65
Bse3DI	GCAATG	1 cut(s)	158
BseDI	CCNNGG	3 cut(s)	21, 77, 246
BseMI	GCAATG	1 cut(s)	158
BseMII	CTCAG	2 cut(s)	56, 326
BseNI	ACTGG	1 cut(s)	143
BseSI	GKGCMC	1 cut(s)	301
BseXI	GCAGC	1 cut(s)	20
BshFI	GGCC	2 cut(s)	63, 308
BsiHKCI	CYCGRG	1 cut(s)	245
BsiSI	CCGG	2 cut(s)	162, 196
BsmAI	GTCTC	1 cut(s)	250
BsmI	GAATGC	1 cut(s)	236
BsnI	GGCC	2 cut(s)	63, 308
BsoBI	CYCGRG	1 cut(s)	245
Bsp1286I	GDGCHC	2 cut(s)	168, 301
Bsp143I	GATC	1 cut(s)	94
Bsp19I	CCATGG	1 cut(s)	77
BspACI	CCGC	3 cut(s)	86, 177, 214
BspANI	GGCC	2 cut(s)	63, 308
BspCNI	CTCAG	2 cut(s)	57, 325
BspLI	GGNNCC	1 cut(s)	194
BspPI	GGATC	1 cut(s)	102
BsrDI	GCAATG	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	143
BssECI	CCNNGG	3 cut(s)	21, 77, 246
BssMI	GATC	1 cut(s)	94
BssT1I	CCWWGG	1 cut(s)	77
Bst6I	CTCTTC	1 cut(s)	246
BstAPI	GCANNNNNTGC	1 cut(s)	186
BstBAI	YACGTR	1 cut(s)	115
BstC8I	GCNNGC	2 cut(s)	191, 301
BstDEI	CTNAG	2 cut(s)	65, 312
BstDSI	CCRYGG	1 cut(s)	77
BstKTI	GATC	1 cut(s)	97
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	1 cut(s)	94
BstMWI	GCNNNNNNNGC	3 cut(s)	126, 186, 305
BstSCI	CCNGG	1 cut(s)	161
BstSLI	GKGCMC	1 cut(s)	301
BstV1I	GCAGC	1 cut(s)	20
Bsu36I	CCTNAGG	1 cut(s)	65
BsuRI	GGCC	2 cut(s)	63, 308
BtgI	CCRYGG	1 cut(s)	77
Cac8I	GCNNGC	2 cut(s)	191, 301
Cfr13I	GGNCC	2 cut(s)	61, 74
Csp6I	GTAC	2 cut(s)	4, 112
CviAII	CATG	2 cut(s)	78, 304
CviJI	RGCY	6 cut(s)	33, 63, 166, 193, 203, 308
CviKI_1	RGCY	6 cut(s)	33, 63, 166, 193, 203, 308
CviQI	GTAC	2 cut(s)	4, 112
DdeI	CTNAG	2 cut(s)	65, 312
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
EciI	GGCGGA	1 cut(s)	203
Eco130I	CCWWGG	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	74
Eco81I	CCTNAGG	1 cut(s)	65
Eco88I	CYCGRG	1 cut(s)	245
EcoRI	GAATTC	3 cut(s)	99, 142, 157
EcoT14I	CCWWGG	1 cut(s)	77
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	77
FaeI	CATG	2 cut(s)	81, 307
FaiI	YATR	4 cut(s)	44, 59, 79, 305
FatI	CATG	2 cut(s)	77, 303
Fnu4HI	GCNGC	2 cut(s)	34, 178
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	2 cut(s)	34, 178
GluI	GCNGC	2 cut(s)	34, 178
HaeIII	GGCC	2 cut(s)	63, 308
HapII	CCGG	2 cut(s)	162, 196
Hin1II	CATG	2 cut(s)	81, 307
HinfI	GANTC	1 cut(s)	258
HpaII	CCGG	2 cut(s)	162, 196
Hpy188I	TCNGA	2 cut(s)	25, 105
Hpy188III	TCNNGA	1 cut(s)	266
HpyAV	CCTTC	1 cut(s)	125
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	3 cut(s)	151, 189, 236
HpyF10VI	GCNNNNNNNGC	3 cut(s)	126, 186, 305
HpyF3I	CTNAG	2 cut(s)	65, 312
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	2 cut(s)	81, 307
Kzo9I	GATC	1 cut(s)	94
LmnI	GCTCC	1 cut(s)	198
LpnPI	CCDG	7 cut(s)	77, 110, 124, 175, 175, 209, 299
Lsp1109I	GCAGC	1 cut(s)	20
MaeII	ACGT	1 cut(s)	114
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MboII	GAAGA	2 cut(s)	238, 263
MhlI	GDGCHC	2 cut(s)	168, 301
MluCI	AATT	7 cut(s)	26, 99, 142, 157, 220, 318, 323
MlyI	GAGTC	1 cut(s)	252
MnlI	CCTC	6 cut(s)	4, 31, 60, 85, 241, 319
MseI	TTAA	2 cut(s)	321, 331
MspI	CCGG	2 cut(s)	162, 196
MspR9I	CCNGG	1 cut(s)	163
Mva1269I	GAATGC	1 cut(s)	236
MwoI	GCNNNNNNNGC	3 cut(s)	126, 186, 305
NciI	CCSGG	1 cut(s)	163
NcoI	CCATGG	1 cut(s)	77
NdeII	GATC	1 cut(s)	94
NlaIII	CATG	2 cut(s)	81, 307
NlaIV	GGNNCC	1 cut(s)	194
PctI	GAATGC	1 cut(s)	236
PkrI	GCNGC	2 cut(s)	35, 179
PleI	GAGTC	1 cut(s)	252
PpsI	GAGTC	1 cut(s)	252
Ppu21I	YACGTR	1 cut(s)	115
PspN4I	GGNNCC	1 cut(s)	194
PspPI	GGNCC	2 cut(s)	61, 74
RsaI	GTAC	2 cut(s)	5, 113
RsaNI	GTAC	2 cut(s)	4, 112
SaqAI	TTAA	2 cut(s)	321, 331
SatI	GCNGC	2 cut(s)	34, 178
Sau3AI	GATC	1 cut(s)	94
Sau96I	GGNCC	2 cut(s)	61, 74
SchI	GAGTC	1 cut(s)	252
ScrFI	CCNGG	1 cut(s)	163
SduI	GDGCHC	2 cut(s)	168, 301
SetI	ASST	5 cut(s)	35, 76, 117, 235, 318
SinI	GGWCC	1 cut(s)	74
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	7 cut(s)	26, 99, 142, 157, 220, 318, 323
SsiI	CCGC	3 cut(s)	86, 177, 214
StyD4I	CCNGG	1 cut(s)	161
StyI	CCWWGG	1 cut(s)	77
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	1 cut(s)	97
TasI	AATT	7 cut(s)	26, 99, 142, 157, 220, 318, 323
TauI	GCSGC	1 cut(s)	180
Tru1I	TTAA	2 cut(s)	321, 331
Tru9I	TTAA	2 cut(s)	321, 331
TseI	GCWGC	1 cut(s)	33
VpaK11BI	GGWCC	1 cut(s)	74
XapI	RAATTY	4 cut(s)	99, 142, 157, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.