Rh5AG271500
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0003638
Physical Location & Seq
Reverse (-)
35995534 .. 35996784
1251 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG271500.1

Sequence Viewer

Length: 363 bp
ATGGACGGCGGTGGAGGATCGAATTCTGATCAACAGGGCGAAGGGAACTGGAATTCGGTGCAATGGAATTCCGGGCTCAAGCGTTGCGGCAAGAGTTGCAGGCTCCGGTGGGCTAATCAACTCCGCCCTAATTTGAAGAAAGGTGCATTCACACCCGAGGAAGAGAGACTCATTCTTGAACTCCACGCCAAATACGGCAACAAATGGGCACGCATGGCCTCTCAGAGCTTCCTTCGAGCCAAGTATCTCATACACCAGAGCCTCCTTCAAGCCAACTATCTCAAGCACCACAGCTCCCTTCAAGTCAAGCATCTCAAGAACATTCATTGTCAGAGATCACCACCACCATTGATGCCAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

120

Amino Acids

13.71

Weight (kDa)

10.08

Isoelectric Point (pI)

67.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_6 PF13921 12 - 56 1.3e-06 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 47 - 74 1.7e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 9, 87, 124
AclWI GGATC 1 cut(s) 25
AcsI RAATTY 3 cut(s) 22, 52, 67
AgsI TTSAA 4 cut(s) 136, 179, 269, 302
AluBI AGCT 2 cut(s) 228, 294
AluI AGCT 2 cut(s) 228, 294
Alw26I GTCTC 1 cut(s) 160
AlwI GGATC 1 cut(s) 25
Ama87I CYCGRG 1 cut(s) 155
AoxI GGCC 1 cut(s) 216
ApoI RAATTY 3 cut(s) 22, 52, 67
AsuC2I CCSGG 1 cut(s) 73
AsuHPI GGTGA 1 cut(s) 330
AvaI CYCGRG 1 cut(s) 155
BaeGI GKGCMC 1 cut(s) 211
BanII GRGCYC 1 cut(s) 78
BceAI ACGGC 2 cut(s) 22, 211
BclI TGATCA 1 cut(s) 28
BcnI CCSGG 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 160
BisI GCNGC 1 cut(s) 88
BlsI GCNGC 1 cut(s) 89
Bme1390I CCNGG 1 cut(s) 73
BmeT110I CYCGRG 1 cut(s) 155
BmiI GGNNCC 1 cut(s) 104
BmrFI CCNGG 1 cut(s) 73
BmsI GCATC 2 cut(s) 319, 342
BpuEI CTTGAG 3 cut(s) 62, 266, 299
BpuMI CCSGG 1 cut(s) 73
BsaJI CCNNGG 1 cut(s) 156
BsaWI WCCGGW 1 cut(s) 105
BsaXI ACNNNNNCTCC 2 cut(s) 278, 308
Bse1I ACTGG 1 cut(s) 53
Bse3DI GCAATG 1 cut(s) 68
BseDI CCNNGG 1 cut(s) 156
BseMI GCAATG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 236
BseNI ACTGG 1 cut(s) 53
BseSI GKGCMC 1 cut(s) 211
BshFI GGCC 1 cut(s) 218
BsiHKCI CYCGRG 1 cut(s) 155
BsiSI CCGG 2 cut(s) 72, 106
BsmAI GTCTC 1 cut(s) 160
BsmI GAATGC 1 cut(s) 146
BsnI GGCC 1 cut(s) 218
BsoBI CYCGRG 1 cut(s) 155
Bsp1286I GDGCHC 2 cut(s) 78, 211
Bsp143I GATC 3 cut(s) 17, 28, 335
BspACI CCGC 3 cut(s) 9, 87, 124
BspANI GGCC 1 cut(s) 218
BspCNI CTCAG 1 cut(s) 235
BspLI GGNNCC 1 cut(s) 104
BspPI GGATC 1 cut(s) 25
BsrDI GCAATG 1 cut(s) 68
BsrI ACTGG 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 3 cut(s) 17, 28, 335
Bst6I CTCTTC 1 cut(s) 156
BstAPI GCANNNNNTGC 1 cut(s) 96
BstC8I GCNNGC 2 cut(s) 101, 211
BstDEI CTNAG 1 cut(s) 222
BstKTI GATC 3 cut(s) 20, 31, 338
BstMAI GTCTC 1 cut(s) 160
BstMBI GATC 3 cut(s) 17, 28, 335
BstMWI GCNNNNNNNGC 2 cut(s) 96, 215
BstSCI CCNGG 1 cut(s) 71
BstSLI GKGCMC 1 cut(s) 211
BsuRI GGCC 1 cut(s) 218
Cac8I GCNNGC 2 cut(s) 101, 211
CspCI CAANNNNNGTGG 1 cut(s) 330
CviAII CATG 1 cut(s) 214
CviJI RGCY 9 cut(s) 76, 103, 113, 218, 228, 239, 261, 272, 294
CviKI_1 RGCY 9 cut(s) 76, 103, 113, 218, 228, 239, 261, 272, 294
DdeI CTNAG 1 cut(s) 222
DpnI GATC 3 cut(s) 19, 30, 337
DpnII GATC 3 cut(s) 17, 28, 335
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
EciI GGCGGA 1 cut(s) 113
Eco24I GRGCYC 1 cut(s) 78
Eco88I CYCGRG 1 cut(s) 155
EcoRI GAATTC 3 cut(s) 22, 52, 67
EcoT38I GRGCYC 1 cut(s) 78
FaeI CATG 1 cut(s) 217
FaiI YATR 3 cut(s) 215, 251, 361
FatI CATG 1 cut(s) 213
FbaI TGATCA 1 cut(s) 28
Fnu4HI GCNGC 1 cut(s) 88
FriOI GRGCYC 1 cut(s) 78
Fsp4HI GCNGC 1 cut(s) 88
GluI GCNGC 1 cut(s) 88
HaeIII GGCC 1 cut(s) 218
HapII CCGG 2 cut(s) 72, 106
Hin1II CATG 1 cut(s) 217
HinfI GANTC 1 cut(s) 168
HpaII CCGG 2 cut(s) 72, 106
HphI GGTGA 1 cut(s) 330
Hpy188I TCNGA 3 cut(s) 28, 225, 333
Hpy188III TCNNGA 2 cut(s) 176, 316
HpyAV CCTTC 4 cut(s) 35, 242, 275, 308
HpyCH4V TGCA 3 cut(s) 61, 99, 146
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 215
HpyF3I CTNAG 1 cut(s) 222
Hsp92II CATG 1 cut(s) 217
Ksp22I TGATCA 1 cut(s) 28
Kzo9I GATC 3 cut(s) 17, 28, 335
LmnI GCTCC 2 cut(s) 108, 299
LpnPI CCDG 6 cut(s) 20, 34, 85, 85, 119, 269
LweI GCATC 2 cut(s) 319, 342
MalI GATC 3 cut(s) 19, 30, 337
MboI GATC 3 cut(s) 17, 28, 335
MboII GAAGA 2 cut(s) 148, 173
MhlI GDGCHC 2 cut(s) 78, 211
MluCI AATT 4 cut(s) 22, 52, 67, 130
MlyI GAGTC 1 cut(s) 162
MnlI CCTC 4 cut(s) 8, 151, 229, 272
MspI CCGG 2 cut(s) 72, 106
MspR9I CCNGG 1 cut(s) 73
Mva1269I GAATGC 1 cut(s) 146
MwoI GCNNNNNNNGC 2 cut(s) 96, 215
NciI CCSGG 1 cut(s) 73
NdeII GATC 3 cut(s) 17, 28, 335
NlaIII CATG 1 cut(s) 217
NlaIV GGNNCC 1 cut(s) 104
PctI GAATGC 1 cut(s) 146
PkrI GCNGC 1 cut(s) 89
PleI GAGTC 1 cut(s) 162
PpsI GAGTC 1 cut(s) 162
PspN4I GGNNCC 1 cut(s) 104
SatI GCNGC 1 cut(s) 88
Sau3AI GATC 3 cut(s) 17, 28, 335
SchI GAGTC 1 cut(s) 162
ScrFI CCNGG 1 cut(s) 73
SduI GDGCHC 2 cut(s) 78, 211
SetI ASST 3 cut(s) 145, 230, 296
SfaNI GCATC 2 cut(s) 319, 342
SmlI CTYRAG 3 cut(s) 77, 281, 314
SmoI CTYRAG 3 cut(s) 77, 281, 314
Sse9I AATT 4 cut(s) 22, 52, 67, 130
SsiI CCGC 3 cut(s) 9, 87, 124
StyD4I CCNGG 1 cut(s) 71
TaqI TCGA 2 cut(s) 20, 235
TasI AATT 4 cut(s) 22, 52, 67, 130
TauI GCSGC 1 cut(s) 90
TspDTI ATGAA 1 cut(s) 314
XapI RAATTY 3 cut(s) 22, 52, 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.