Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010162.1

Orthogroup ID

OG0003638

Physical Location & Seq

Genomic Coordinates Forward (+)

10448 .. 11588

Gene Structure 1141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010162.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

atgccacccacaggccaaactttttccttccaagttcaaaattcatcatcatcgcagactcaccaactccctctcatagcccctactgacccatatcactctgtcccctcctctcccaaatccgccctcagtcattcccttcctctaatatttgatcaccccaccgactcttccttcacattccaccgccccactcccatcctcggagccccattgcggtacaaaaggcaccccgacagccgtgacatctcccctccagtttccccaagcctacaacgaagcacctctattttacgagccagctccatgcccgacatatcttacaatcagcatattgcagcaggaaacatgtccatgcctgacatgtcctcttttcagtttcagccaacacgtcatttcaatggttcgttgccaccattgccgcgttccaccagcgtcccgtttgattttggggacagtaccaggtcactttattcggtgaagtcatcagagcttccttcaagccgagtatcccaaacacagtcacagtctgatcagatctccaatgataacaagctaaatgtggtggctgccgctagtgagactcattacagtaatgtgttggaagagttattacgagaagctgaggcgttggcttctgttgcaactccaaggaaagcatcaattggtctagggggacgttcttttgaagacaaacatgttttggatggttatggccgttggctgcaatctacaggttccacaaataactctttatcagatatgaagtcaatccaggatcatcatgaccacatgaataattccatgcctgaagacttgtcgaagctgttcagttttattccttcaaccgagccggtctccgattggtacagtactgatagtggggaattctccaatggcggccaatcttctggaataaccgaggctagttttgagtttgacatgcagcaacatatggcttcaatgttccctgttgttgcctcatcaacagaccatgacagagttcctaacagttgggacaacttgccaggaatgtgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

346

Amino Acids

37.94

Weight (kDa)

5.6

Isoelectric Point (pI)

70.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26930
fragaria_vesca	FvH4_3g22960 FvH4_3g22960 FvH4_3g22960 FvH4_3g22960 FvH4_3g22970 FvH4_3g22970
malus_domestica	MD05G1136100.v1.1 MD11G1215600.v1.1 MD11G1216000.v1.1
prunus_persica	Prupe.4G215500_v2.0.a1 Prupe.4G215500_v2.0.a1 Prupe.4G215600_v2.0.a1
pyrus_communis	pycom11g19020
rosa_chinensis	RchiOBHm_Chr5g0040211 RchiOBHm_Chr5g0040281
rosa_laevigata	RLG00000033968 RLG00000033970
rosa_multiflora	Rmu_co8296705.1_g000001 Rmu_co8344811.1_g000001 Rmu_sc0002908.1_g000007 Rmu_sc0010162.1_g000003 Rmu_sc0014485.1_g000006
rosa_roxburghii	Rroxscaffold_1G00041020 Rroxscaffold_1G00041030
rosa_rugosa	Rorug05G0184400 Rorug05G0184500
rosa_samantha	Rh5AG271400 Rh5AG271500 Rh5BG274600 Rh5BG275400 Rh5CG307600 Rh5DG282900 Rh5DG283600
rosa_wichuraiana	Rw5G025380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	228
AccII	CGCG	1 cut(s)	424
AciI	CCGC	6 cut(s)	123, 187, 217, 422, 573, 900
AclWI	GGATC	1 cut(s)	786
AcoI	YGGCCR	2 cut(s)	715, 901
AcsI	RAATTY	2 cut(s)	40, 887
AcuI	CTGAAG	1 cut(s)	831
AfaI	GTAC	4 cut(s)	221, 460, 869, 874
AfiI	CCNNNNNNNGG	3 cut(s)	11, 203, 216
AflIII	ACRYGT	4 cut(s)	348, 363, 389, 697
AgsI	TTSAA	6 cut(s)	38, 400, 501, 689, 846, 963
AjiI	CACGTC	1 cut(s)	392
AjnI	CCWGG	3 cut(s)	461, 774, 1027
AluBI	AGCT	5 cut(s)	303, 493, 556, 623, 826
AluI	AGCT	5 cut(s)	303, 493, 556, 623, 826
Alw26I	GTCTC	2 cut(s)	575, 862
AlwI	GGATC	1 cut(s)	786
AoxI	GGCC	3 cut(s)	13, 715, 901
ApeKI	GCWGC	4 cut(s)	338, 569, 724, 946
ApoI	RAATTY	2 cut(s)	40, 887
Asp700I	GAANNNNTTC	1 cut(s)	827
AsuHPI	GGTGA	3 cut(s)	53, 149, 490
BanI	GGYRCC	1 cut(s)	228
BanII	GRGCYC	1 cut(s)	211
BarI	GAAGNNNNNNTAC	2 cut(s)	597, 629
BbsI	GAAGAC	2 cut(s)	696, 819
BbvCI	CCTCAGC	1 cut(s)	624
BbvI	GCAGC	4 cut(s)	350, 556, 711, 958
BccI	CCATC	2 cut(s)	206, 701
BceAI	ACGGC	2 cut(s)	225, 702
BciT130I	CCWGG	3 cut(s)	463, 776, 1029
BciVI	GTATCC	1 cut(s)	520
BclI	TGATCA	2 cut(s)	154, 532
BcoDI	GTCTC	2 cut(s)	575, 862
BfaI	CTAG	3 cut(s)	576, 671, 927
BfmI	CTRYAG	1 cut(s)	732
BfuI	GTATCC	1 cut(s)	520
BglII	AGATCT	1 cut(s)	537
BisI	GCNGC	7 cut(s)	339, 422, 570, 573, 725, 901, 947
BlsI	GCNGC	7 cut(s)	340, 423, 571, 574, 726, 902, 948
BmcAI	AGTACT	1 cut(s)	874
Bme1390I	CCNGG	3 cut(s)	463, 776, 1029
BmgBI	CACGTC	1 cut(s)	392
BmiI	GGNNCC	3 cut(s)	208, 230, 739
BmrFI	CCNGG	3 cut(s)	463, 776, 1029
BmsI	GCATC	1 cut(s)	668
BpiI	GAAGAC	2 cut(s)	696, 819
BplI	GAGNNNNNCTC	2 cut(s)	842, 874
BpmI	CTGGAG	1 cut(s)	240
Bpu10I	CCTNAGC	1 cut(s)	624
BsaI	GGTCTC	1 cut(s)	862
BsaJI	CCNNGG	3 cut(s)	202, 650, 921
Bsc4I	CCNNNNNNNGG	3 cut(s)	11, 203, 216
Bse118I	RCCGGY	1 cut(s)	853
Bse1I	ACTGG	1 cut(s)	257
Bse3DI	GCAATG	2 cut(s)	212, 416
BseBI	CCWGG	3 cut(s)	463, 776, 1029
BseDI	CCNNGG	3 cut(s)	202, 650, 921
BseGI	GGATG	2 cut(s)	198, 712
BseLI	CCNNNNNNNGG	3 cut(s)	11, 203, 216
BseMI	GCAATG	2 cut(s)	212, 416
BseMII	CTCAG	2 cut(s)	142, 615
BseNI	ACTGG	1 cut(s)	257
BseRI	GAGGAG	1 cut(s)	100
BseXI	GCAGC	4 cut(s)	350, 556, 711, 958
Bsh1236I	CGCG	1 cut(s)	424
BshFI	GGCC	3 cut(s)	15, 717, 903
BshNI	GGYRCC	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	854
BslFI	GGGAC	5 cut(s)	89, 422, 467, 690, 1031
BslI	CCNNNNNNNGG	3 cut(s)	11, 203, 216
BsmAI	GTCTC	2 cut(s)	575, 862
BsmFI	GGGAC	5 cut(s)	89, 422, 467, 690, 1031
BsnI	GGCC	3 cut(s)	15, 717, 903
Bso31I	GGTCTC	1 cut(s)	862
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp143I	GATC	4 cut(s)	154, 532, 537, 778
BspACI	CCGC	6 cut(s)	123, 187, 217, 422, 573, 900
BspANI	GGCC	3 cut(s)	15, 717, 903
BspCNI	CTCAG	2 cut(s)	141, 616
BspFNI	CGCG	1 cut(s)	424
BspHI	TCATGA	1 cut(s)	784
BspLI	GGNNCC	3 cut(s)	208, 230, 739
BspPI	GGATC	1 cut(s)	786
BspT107I	GGYRCC	1 cut(s)	228
BspTNI	GGTCTC	1 cut(s)	862
BsrDI	GCAATG	2 cut(s)	212, 416
BsrFI	RCCGGY	1 cut(s)	853
BsrI	ACTGG	1 cut(s)	257
BssAI	RCCGGY	1 cut(s)	853
BssECI	CCNNGG	3 cut(s)	202, 650, 921
BssMI	GATC	4 cut(s)	154, 532, 537, 778
BssT1I	CCWWGG	1 cut(s)	650
Bst2UI	CCWGG	3 cut(s)	463, 776, 1029
Bst4CI	ACNGT	6 cut(s)	458, 522, 528, 593, 872, 1013
Bst6I	CTCTTC	2 cut(s)	175, 600
BstC8I	GCNNGC	1 cut(s)	301
BstDEI	CTNAG	2 cut(s)	128, 624
BstF5I	GGATG	2 cut(s)	198, 712
BstFNI	CGCG	1 cut(s)	424
BstKTI	GATC	4 cut(s)	157, 535, 540, 781
BstMAI	GTCTC	2 cut(s)	575, 862
BstMBI	GATC	4 cut(s)	154, 532, 537, 778
BstMWI	GCNNNNNNNGC	2 cut(s)	418, 641
BstNI	CCWGG	3 cut(s)	463, 776, 1029
BstNSI	RCATGY	4 cut(s)	352, 367, 701, 946
BstSCI	CCNGG	3 cut(s)	461, 774, 1027
BstSFI	CTRYAG	1 cut(s)	732
BstUI	CGCG	1 cut(s)	424
BstV1I	GCAGC	4 cut(s)	350, 556, 711, 958
BstV2I	GAAGAC	2 cut(s)	696, 819
BstX2I	RGATCY	1 cut(s)	537
BstXI	CCANNNNNNTGG	1 cut(s)	911
BstYI	RGATCY	1 cut(s)	537
BsuI	GTATCC	1 cut(s)	520
BsuRI	GGCC	3 cut(s)	15, 717, 903
BtgZI	GCGATG	1 cut(s)	36
BtrI	CACGTC	1 cut(s)	392
BtsCI	GGATG	2 cut(s)	198, 712
Cac8I	GCNNGC	1 cut(s)	301
CciI	TCATGA	1 cut(s)	784
Cfr10I	RCCGGY	1 cut(s)	853
CseI	GACGC	1 cut(s)	424
CsiI	ACCWGGT	1 cut(s)	461
Csp6I	GTAC	4 cut(s)	220, 459, 868, 873
CviQI	GTAC	4 cut(s)	220, 459, 868, 873
DdeI	CTNAG	2 cut(s)	128, 624
DpnI	GATC	4 cut(s)	156, 534, 539, 780
DpnII	GATC	4 cut(s)	154, 532, 537, 778
EaeI	YGGCCR	2 cut(s)	715, 901
Eam1104I	CTCTTC	2 cut(s)	175, 600
EarI	CTCTTC	2 cut(s)	175, 600
EciI	GGCGGA	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	650
Eco24I	GRGCYC	1 cut(s)	211
Eco31I	GGTCTC	1 cut(s)	862
Eco57I	CTGAAG	1 cut(s)	831
EcoRI	GAATTC	1 cut(s)	887
EcoRII	CCWGG	3 cut(s)	461, 774, 1027
EcoT14I	CCWWGG	1 cut(s)	650
EcoT38I	GRGCYC	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	650
FaqI	GGGAC	5 cut(s)	89, 422, 467, 690, 1031
FauNDI	CATATG	1 cut(s)	954
FbaI	TGATCA	2 cut(s)	154, 532
Fnu4HI	GCNGC	7 cut(s)	339, 422, 570, 573, 725, 901, 947
FokI	GGATG	2 cut(s)	185, 719
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	7 cut(s)	339, 422, 570, 573, 725, 901, 947
FspBI	CTAG	3 cut(s)	576, 671, 927
GluI	GCNGC	7 cut(s)	339, 422, 570, 573, 725, 901, 947
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	3 cut(s)	15, 717, 903
HapII	CCGG	1 cut(s)	854
HgaI	GACGC	1 cut(s)	424
HinfI	GANTC	3 cut(s)	58, 167, 583
HpaII	CCGG	1 cut(s)	854
HphI	GGTGA	3 cut(s)	53, 149, 490
Hpy188I	TCNGA	6 cut(s)	206, 490, 532, 537, 760, 862
Hpy188III	TCNNGA	2 cut(s)	785, 912
HpyAV	CCTTC	5 cut(s)	37, 149, 184, 507, 852
HpyCH4III	ACNGT	6 cut(s)	458, 522, 528, 593, 872, 1013
HpyCH4IV	ACGT	2 cut(s)	391, 679
HpyCH4V	TGCA	4 cut(s)	338, 644, 727, 946
HpyF10VI	GCNNNNNNNGC	2 cut(s)	418, 641
HpyF3I	CTNAG	2 cut(s)	128, 624
HpySE526I	ACGT	2 cut(s)	391, 679
Ksp22I	TGATCA	2 cut(s)	154, 532
Kzo9I	GATC	4 cut(s)	154, 532, 537, 778
LmnI	GCTCC	2 cut(s)	206, 308
Lsp1109I	GCAGC	4 cut(s)	350, 556, 711, 958
LweI	GCATC	1 cut(s)	668
MabI	ACCWGGT	1 cut(s)	461
MaeI	CTAG	3 cut(s)	576, 671, 927
MaeII	ACGT	2 cut(s)	391, 679
MaeIII	GTNAC	3 cut(s)	242, 465, 522
MalI	GATC	4 cut(s)	156, 534, 539, 780
MboI	GATC	4 cut(s)	154, 532, 537, 778
MboII	GAAGA	5 cut(s)	162, 617, 701, 824, 900
MfeI	CAATTG	1 cut(s)	663
MflI	RGATCY	1 cut(s)	537
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	4 cut(s)	40, 663, 799, 887
MlyI	GAGTC	3 cut(s)	52, 161, 577
MmeI	TCCRAC	1 cut(s)	582
MroXI	GAANNNNTTC	1 cut(s)	827
MslI	CAYNNNNRTG	2 cut(s)	353, 399
MspI	CCGG	1 cut(s)	854
MspR9I	CCNGG	3 cut(s)	463, 776, 1029
MunI	CAATTG	1 cut(s)	663
MvaI	CCWGG	3 cut(s)	463, 776, 1029
MvnI	CGCG	1 cut(s)	424
MwoI	GCNNNNNNNGC	2 cut(s)	418, 641
NdeI	CATATG	1 cut(s)	954
NdeII	GATC	4 cut(s)	154, 532, 537, 778
NlaIV	GGNNCC	3 cut(s)	208, 230, 739
NmeAIII	GCCGAG	1 cut(s)	530
NmuCI	GTSAC	3 cut(s)	242, 465, 522
NspI	RCATGY	4 cut(s)	352, 367, 701, 946
PagI	TCATGA	1 cut(s)	784
PciI	ACATGT	3 cut(s)	348, 363, 697
PdmI	GAANNNNTTC	1 cut(s)	827
PfoI	TCCNGGA	1 cut(s)	774
PkrI	GCNGC	7 cut(s)	340, 423, 571, 574, 726, 902, 948
PleI	GAGTC	3 cut(s)	52, 161, 577
PpsI	GAGTC	3 cut(s)	52, 161, 577
PscI	ACATGT	3 cut(s)	348, 363, 697
Psp6I	CCWGG	3 cut(s)	461, 774, 1027
PspGI	CCWGG	3 cut(s)	461, 774, 1027
PspN4I	GGNNCC	3 cut(s)	208, 230, 739
PsuI	RGATCY	1 cut(s)	537
RsaI	GTAC	4 cut(s)	221, 460, 869, 874
RsaNI	GTAC	4 cut(s)	220, 459, 868, 873
RseI	CAYNNNNRTG	2 cut(s)	353, 399
SatI	GCNGC	7 cut(s)	339, 422, 570, 573, 725, 901, 947
Sau3AI	GATC	4 cut(s)	154, 532, 537, 778
ScaI	AGTACT	1 cut(s)	874
SchI	GAGTC	3 cut(s)	52, 161, 577
ScrFI	CCNGG	3 cut(s)	463, 776, 1029
SduI	GDGCHC	1 cut(s)	211
SexAI	ACCWGGT	1 cut(s)	461
SfaNI	GCATC	1 cut(s)	668
SfcI	CTRYAG	1 cut(s)	732
SmiMI	CAYNNNNRTG	2 cut(s)	353, 399
Sse9I	AATT	4 cut(s)	40, 663, 799, 887
SsiI	CCGC	6 cut(s)	123, 187, 217, 422, 573, 900
SspI	AATATT	1 cut(s)	150
SspMI	CTAG	3 cut(s)	576, 671, 927
StyD4I	CCNGG	3 cut(s)	461, 774, 1027
StyI	CCWWGG	1 cut(s)	650
TaaI	ACNGT	6 cut(s)	458, 522, 528, 593, 872, 1013
TaiI	ACGT	2 cut(s)	394, 682
TaqI	TCGA	1 cut(s)	821
TasI	AATT	4 cut(s)	40, 663, 799, 887
TatI	WGTACW	1 cut(s)	872
TauI	GCSGC	3 cut(s)	424, 575, 903
TseFI	GTSAC	3 cut(s)	242, 465, 522
TseI	GCWGC	4 cut(s)	338, 569, 724, 946
Tsp45I	GTSAC	3 cut(s)	242, 465, 522
TspDTI	ATGAA	3 cut(s)	33, 779, 809
XapI	RAATTY	2 cut(s)	40, 887
XceI	RCATGY	4 cut(s)	352, 367, 701, 946
XmnI	GAANNNNTTC	1 cut(s)	827
XspI	CTAG	3 cut(s)	576, 671, 927
ZrmI	AGTACT	1 cut(s)	874

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.