Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003638

Physical Location & Seq

Genomic Coordinates Reverse (-)

34833180 .. 34836526

Gene Structure 3347 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033970

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGGCACATAATGGTATCAATGACATCAATGGCACTGCCATGTCCGGCGAGGGAAACCCCTCGGAATTGAGCTGCGTATTTATGGAGGGCAATAATATGGGCCTGAAGAAAGGGCTCAAGCGTTGTGGCAAGAGTTGCGGGCTCCGGTGGGCTAATCATCTCCGCCCTAATTTGAAGAAAGCTGCATTCACACCCGAGGAAGAGAGACTCATTCTTGAACTGCAAGCCAAATACGGCAACAAATGGGCACGCATGGCCTCTCAGTTACCTGGACGAACAGATAATGAAATTAAAAATTACTGGAACACAAGGGTGAAGAAGCGACTACGCAAACGTCTTCCACTATATCCTCATGACATTAACCCATCCAAACGAGTATGTCACATTCCCACTGGAGTAACCCAACTTTCAACCACCACAGTACCACAGACAGACACTAGTTTTAGCTTCCAATTACAAGCCTTATCATCCCAAAACAAAACCCAACTCCCTCCCCTCCCCTCCCAAAACCACCCCAACTCCACTCTCAATCATTCCCTCCCTCTATTTGATCTCACCACCTCGTCCTGCACTACCTCGGTGCCCTCGTTTACCTTCCACTGCCCCACTCCAATGCTTGGAACCCCGTTAGGCTACAAACGTTACCAAGAAATTACTGGGTTCTCGCCTCCTATTTCTCCAACTCCACAAAGAAATAGCTCCATTTTGCGAACCAGCTCCATGCCCGACATTGCTTCCTATCAACAGTTTGCATCAGGCACCAGCTCCATGCCTGACAACAGCTCTTTTCAGTTCCAGCCACAGACTTTTAATGAGTCTTTATTGCCATTACCCCGTACCAGCACCCAGTTCAATTTCGGGGACAGCTTATTGTCACCAATTAGTACAGTTTATTCTATGAATTCAGAGCTTCCTTCGAGTGAAGTATCTCATACACCAGAGCATCCTTCAAGCCAACTATCTCAAGCACCACAGCTCCCTTCAAGTCAAGCATCTCAAGAACAGTCATTGTCAGAGATCACCACCACCATTGATGCCAACATAAATGCGACTCATTGCAGTGATGGAGTATTAGAGGAGTTGTTACAAGAAGCTGAGACATTTGGTCGTGGTTCACATCCAATTACGAAACCAACTGGTCTGTTGGATTCATTTGAAAAGAATCATGCCTTGGATGGTTATGGTCACTCACCGGCTTCAACCCCCATGGATAGCTCTTTATTAGAAATGTACCCAACCCAGGATCATGAGCACATGAACTCGATACCCAAATACCTGTCGAAGTTGTTCAGTTTCAACCTATCCATGGAGCCGGTGTCCAATTCGTACAATGCAGAGGCTAGTTTGGAGTTTGGCATGCAACAGCATATGGATTCAATGTGGCCGCCAGTTTTTGCCTCGATTGATTATGACACAGTCCCTAACTCTTGGGACAACTTGCCTGAATCCTTAGTGGAGGTATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

489

Amino Acids

54.01

Weight (kDa)

5.89

Isoelectric Point (pI)

57.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	62 - 103	1.1e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	63 - 110	4.3e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26930
fragaria_vesca	FvH4_3g22960 FvH4_3g22960 FvH4_3g22960 FvH4_3g22960 FvH4_3g22970 FvH4_3g22970
malus_domestica	MD05G1136100.v1.1 MD11G1215600.v1.1 MD11G1216000.v1.1
prunus_persica	Prupe.4G215500_v2.0.a1 Prupe.4G215500_v2.0.a1 Prupe.4G215600_v2.0.a1
pyrus_communis	pycom11g19020
rosa_chinensis	RchiOBHm_Chr5g0040211 RchiOBHm_Chr5g0040281
rosa_laevigata	RLG00000033968 RLG00000033970
rosa_multiflora	Rmu_co8296705.1_g000001 Rmu_co8344811.1_g000001 Rmu_sc0002908.1_g000007 Rmu_sc0010162.1_g000003 Rmu_sc0014485.1_g000006
rosa_roxburghii	Rroxscaffold_1G00041020 Rroxscaffold_1G00041030
rosa_rugosa	Rorug05G0184400 Rorug05G0184500
rosa_samantha	Rh5AG271400 Rh5AG271500 Rh5BG274600 Rh5BG275400 Rh5CG307600 Rh5DG282900 Rh5DG283600
rosa_wichuraiana	Rw5G025380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	580, 758
AccB7I	CCANNNNNTGG	1 cut(s)	617
AciI	CCGC	3 cut(s)	138, 163, 1385
AclI	AACGTT	1 cut(s)	640
AclWI	GGATC	1 cut(s)	1251
AcoI	YGGCCR	1 cut(s)	1382
AcsI	RAATTY	1 cut(s)	901
AcuI	CTGAAG	1 cut(s)	125
AfaI	GTAC	5 cut(s)	423, 838, 886, 1232, 1328
AfiI	CCNNNNNNNGG	3 cut(s)	617, 1240, 1306
AhdI	GACNNNNNGTC	1 cut(s)	1104
AhlI	ACTAGT	1 cut(s)	437
AjnI	CCWGG	2 cut(s)	268, 1239
AjuI	GAANNNNNNNTTGG	2 cut(s)	1154, 1186
AleI	CACNNNNGTG	1 cut(s)	311
Alw21I	GWGCWC	1 cut(s)	1254
Alw26I	GTCTC	2 cut(s)	199, 1091
AlwI	GGATC	1 cut(s)	1251
Ama87I	CYCGRG	1 cut(s)	194
AoxI	GGCC	3 cut(s)	100, 255, 1382
ApeKI	GCWGC	2 cut(s)	72, 182
ApoI	RAATTY	1 cut(s)	901
Asp700I	GAANNNNTTC	1 cut(s)	1286
AspS9I	GGNCC	1 cut(s)	100
AsuHPI	GGTGA	5 cut(s)	325, 547, 867, 1012, 1182
AvaI	CYCGRG	1 cut(s)	194
BaeGI	GKGCMC	2 cut(s)	250, 585
BaeI	ACNNNNGTAYC	2 cut(s)	405, 438
BanI	GGYRCC	2 cut(s)	580, 758
BanII	GRGCYC	2 cut(s)	117, 144
BbsI	GAAGAC	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	1254
BbvI	GCAGC	2 cut(s)	59, 169
BccI	CCATC	3 cut(s)	373, 1058, 1169
BceAI	ACGGC	1 cut(s)	250
BciT130I	CCWGG	2 cut(s)	270, 1241
BcoDI	GTCTC	2 cut(s)	199, 1091
BcuI	ACTAGT	1 cut(s)	437
BfaI	CTAG	2 cut(s)	438, 1341
BisI	GCNGC	3 cut(s)	73, 183, 1385
BlsI	GCNGC	3 cut(s)	74, 184, 1386
Bme1390I	CCNGG	2 cut(s)	270, 1241
BmeRI	GACNNNNNGTC	1 cut(s)	1104
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	5 cut(s)	143, 582, 622, 760, 1311
BmrFI	CCNGG	2 cut(s)	270, 1241
BmrI	ACTGGG	2 cut(s)	666, 841
BmsI	GCATC	4 cut(s)	761, 952, 1001, 1024
BmuI	ACTGGG	2 cut(s)	666, 841
BpiI	GAAGAC	1 cut(s)	329
BpmI	CTGGAG	1 cut(s)	414
BpuEI	CTTGAG	3 cut(s)	101, 948, 981
BsaJI	CCNNGG	7 cut(s)	60, 195, 576, 1170, 1206, 1239, 1305
BsaWI	WCCGGW	1 cut(s)	144
BsaXI	ACNNNNNCTCC	6 cut(s)	503, 533, 960, 990, 1301, 1331
Bsc4I	CCNNNNNNNGG	3 cut(s)	617, 1240, 1306
Bse118I	RCCGGY	2 cut(s)	1192, 1312
Bse1I	ACTGG	6 cut(s)	305, 397, 661, 847, 1141, 1388
Bse3DI	GCAATG	2 cut(s)	729, 1054
BseBI	CCWGG	2 cut(s)	270, 1241
BseDI	CCNNGG	7 cut(s)	60, 195, 576, 1170, 1206, 1239, 1305
BseGI	GGATG	5 cut(s)	365, 467, 943, 1117, 1180
BseLI	CCNNNNNNNGG	3 cut(s)	617, 1240, 1306
BseMI	GCAATG	2 cut(s)	729, 1054
BseMII	CTCAG	2 cut(s)	275, 1086
BseNI	ACTGG	6 cut(s)	305, 397, 661, 847, 1141, 1388
BseRI	GAGGAG	1 cut(s)	1091
BseSI	GKGCMC	2 cut(s)	250, 585
BseXI	GCAGC	2 cut(s)	59, 169
BsgI	GTGCAG	1 cut(s)	553
BshFI	GGCC	3 cut(s)	102, 257, 1384
BshNI	GGYRCC	2 cut(s)	580, 758
BsiHKAI	GWGCWC	1 cut(s)	1254
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	4 cut(s)	45, 145, 1193, 1313
BslFI	GGGAC	3 cut(s)	875, 1403, 1445
BslI	CCNNNNNNNGG	3 cut(s)	617, 1240, 1306
BsmAI	GTCTC	2 cut(s)	199, 1091
BsmFI	GGGAC	3 cut(s)	875, 1403, 1445
BsmI	GAATGC	1 cut(s)	185
BsnI	GGCC	3 cut(s)	102, 257, 1384
BsoBI	CYCGRG	1 cut(s)	194
Bsp1286I	GDGCHC	5 cut(s)	117, 144, 250, 585, 1254
Bsp143I	GATC	3 cut(s)	550, 1017, 1243
Bsp19I	CCATGG	2 cut(s)	1206, 1305
BspACI	CCGC	3 cut(s)	138, 163, 1385
BspANI	GGCC	3 cut(s)	102, 257, 1384
BspCNI	CTCAG	2 cut(s)	274, 1087
BspHI	TCATGA	2 cut(s)	352, 1246
BspLI	GGNNCC	5 cut(s)	143, 582, 622, 760, 1311
BspPI	GGATC	1 cut(s)	1251
BspT107I	GGYRCC	2 cut(s)	580, 758
BsrDI	GCAATG	2 cut(s)	729, 1054
BsrFI	RCCGGY	2 cut(s)	1192, 1312
BsrI	ACTGG	6 cut(s)	305, 397, 661, 847, 1141, 1388
BssAI	RCCGGY	2 cut(s)	1192, 1312
BssECI	CCNNGG	7 cut(s)	60, 195, 576, 1170, 1206, 1239, 1305
BssMI	GATC	3 cut(s)	550, 1017, 1243
BssT1I	CCWWGG	3 cut(s)	1170, 1206, 1305
Bst2UI	CCWGG	2 cut(s)	270, 1241
Bst4CI	ACNGT	5 cut(s)	421, 747, 889, 1005, 1417
Bst6I	CTCTTC	1 cut(s)	195
BstAPI	GCANNNNNTGC	1 cut(s)	135
BstC8I	GCNNGC	4 cut(s)	140, 225, 250, 1358
BstDEI	CTNAG	4 cut(s)	261, 1095, 1450, 1464
BstDSI	CCRYGG	2 cut(s)	1206, 1305
BstF5I	GGATG	5 cut(s)	365, 467, 943, 1117, 1180
BstKTI	GATC	3 cut(s)	553, 1020, 1246
BstMAI	GTCTC	2 cut(s)	199, 1091
BstMBI	GATC	3 cut(s)	550, 1017, 1243
BstMWI	GCNNNNNNNGC	2 cut(s)	135, 254
BstNI	CCWGG	2 cut(s)	270, 1241
BstNSI	RCATGY	1 cut(s)	1360
BstSCI	CCNGG	2 cut(s)	268, 1239
BstSLI	GKGCMC	2 cut(s)	250, 585
BstV1I	GCAGC	2 cut(s)	59, 169
BstV2I	GAAGAC	1 cut(s)	329
BsuRI	GGCC	3 cut(s)	102, 257, 1384
BtgI	CCRYGG	2 cut(s)	1206, 1305
BtsCI	GGATG	5 cut(s)	365, 467, 943, 1117, 1180
BtsI	GCAGTG	3 cut(s)	33, 598, 1066
BtsIMutI	CAGTG	4 cut(s)	33, 390, 598, 1066
Cac8I	GCNNGC	4 cut(s)	140, 225, 250, 1358
CciI	TCATGA	2 cut(s)	352, 1246
Cfr10I	RCCGGY	2 cut(s)	1192, 1312
Cfr13I	GGNCC	1 cut(s)	100
Csp6I	GTAC	5 cut(s)	422, 837, 885, 1231, 1327
CspCI	CAANNNNNGTGG	4 cut(s)	106, 141, 1012, 1047
CviQI	GTAC	5 cut(s)	422, 837, 885, 1231, 1327
DdeI	CTNAG	4 cut(s)	261, 1095, 1450, 1464
DpnI	GATC	3 cut(s)	552, 1019, 1245
DpnII	GATC	3 cut(s)	550, 1017, 1243
DriI	GACNNNNNGTC	1 cut(s)	1104
EaeI	YGGCCR	1 cut(s)	1382
Eam1104I	CTCTTC	1 cut(s)	195
Eam1105I	GACNNNNNGTC	1 cut(s)	1104
EarI	CTCTTC	1 cut(s)	195
EciI	GGCGGA	1 cut(s)	152
Eco130I	CCWWGG	3 cut(s)	1170, 1206, 1305
Eco24I	GRGCYC	2 cut(s)	117, 144
Eco57I	CTGAAG	1 cut(s)	125
Eco88I	CYCGRG	1 cut(s)	194
EcoRI	GAATTC	1 cut(s)	901
EcoRII	CCWGG	2 cut(s)	268, 1239
EcoT14I	CCWWGG	3 cut(s)	1170, 1206, 1305
EcoT38I	GRGCYC	2 cut(s)	117, 144
ErhI	CCWWGG	3 cut(s)	1170, 1206, 1305
FaqI	GGGAC	3 cut(s)	875, 1403, 1445
FauI	CCCGC	1 cut(s)	131
FauNDI	CATATG	1 cut(s)	1368
Fnu4HI	GCNGC	3 cut(s)	73, 183, 1385
FokI	GGATG	5 cut(s)	352, 454, 930, 1104, 1187
FriOI	GRGCYC	2 cut(s)	117, 144
Fsp4HI	GCNGC	3 cut(s)	73, 183, 1385
FspBI	CTAG	2 cut(s)	438, 1341
GluI	GCNGC	3 cut(s)	73, 183, 1385
GsuI	CTGGAG	1 cut(s)	414
HaeIII	GGCC	3 cut(s)	102, 257, 1384
HapII	CCGG	4 cut(s)	45, 145, 1193, 1313
HinfI	GANTC	7 cut(s)	207, 815, 1051, 1148, 1162, 1373, 1445
HpaII	CCGG	4 cut(s)	45, 145, 1193, 1313
HphI	GGTGA	5 cut(s)	325, 547, 867, 1012, 1182
Hpy166II	GTNNAC	2 cut(s)	591, 1115
Hpy188I	TCNGA	3 cut(s)	64, 907, 1015
Hpy188III	TCNNGA	4 cut(s)	215, 353, 998, 1247
Hpy8I	GTNNAC	2 cut(s)	591, 1115
HpyAV	CCTTC	4 cut(s)	604, 924, 957, 990
HpyCH4III	ACNGT	5 cut(s)	421, 747, 889, 1005, 1417
HpyCH4IV	ACGT	2 cut(s)	334, 640
HpyCH4V	TGCA	7 cut(s)	185, 223, 570, 752, 1059, 1334, 1360
HpyF10VI	GCNNNNNNNGC	2 cut(s)	135, 254
HpyF3I	CTNAG	4 cut(s)	261, 1095, 1450, 1464
HpySE526I	ACGT	2 cut(s)	334, 640
Kzo9I	GATC	3 cut(s)	550, 1017, 1243
LmnI	GCTCC	6 cut(s)	147, 704, 722, 770, 981, 1309
Lsp1109I	GCAGC	2 cut(s)	59, 169
LweI	GCATC	4 cut(s)	761, 952, 1001, 1024
MaeI	CTAG	2 cut(s)	438, 1341
MaeII	ACGT	2 cut(s)	334, 640
MaeIII	GTNAC	7 cut(s)	264, 380, 397, 641, 873, 1083, 1184
MalI	GATC	3 cut(s)	552, 1019, 1245
MboI	GATC	3 cut(s)	550, 1017, 1243
MboII	GAAGA	5 cut(s)	118, 187, 212, 328, 329
MhlI	GDGCHC	5 cut(s)	117, 144, 250, 585, 1254
MlyI	GAGTC	3 cut(s)	201, 824, 1045
MmeI	TCCRAC	2 cut(s)	704, 1125
MroXI	GAANNNNTTC	1 cut(s)	1286
MseI	TTAA	3 cut(s)	291, 360, 810
MslI	CAYNNNNRTG	4 cut(s)	38, 311, 611, 1059
MspI	CCGG	4 cut(s)	45, 145, 1193, 1313
MspR9I	CCNGG	2 cut(s)	270, 1241
Mva1269I	GAATGC	1 cut(s)	185
MvaI	CCWGG	2 cut(s)	270, 1241
MwoI	GCNNNNNNNGC	2 cut(s)	135, 254
NcoI	CCATGG	2 cut(s)	1206, 1305
NdeI	CATATG	1 cut(s)	1368
NdeII	GATC	3 cut(s)	550, 1017, 1243
NlaIV	GGNNCC	5 cut(s)	143, 582, 622, 760, 1311
NmuCI	GTSAC	3 cut(s)	380, 873, 1184
NspI	RCATGY	1 cut(s)	1360
OliI	CACNNNNGTG	1 cut(s)	311
PaeI	GCATGC	1 cut(s)	1360
PagI	TCATGA	2 cut(s)	352, 1246
PcsI	WCGNNNNNNNCGW	1 cut(s)	584
PctI	GAATGC	1 cut(s)	185
PdmI	GAANNNNTTC	1 cut(s)	1286
PfeI	GAWTC	4 cut(s)	1148, 1162, 1373, 1445
PflFI	GACNNNGTC	1 cut(s)	1415
PflMI	CCANNNNNTGG	1 cut(s)	617
PkrI	GCNGC	3 cut(s)	74, 184, 1386
PleI	GAGTC	3 cut(s)	201, 823, 1045
PpsI	GAGTC	3 cut(s)	201, 823, 1045
Psp1406I	AACGTT	1 cut(s)	640
Psp6I	CCWGG	2 cut(s)	268, 1239
PspGI	CCWGG	2 cut(s)	268, 1239
PspN4I	GGNNCC	5 cut(s)	143, 582, 622, 760, 1311
PspPI	GGNCC	1 cut(s)	100
PsyI	GACNNNGTC	1 cut(s)	1415
RsaI	GTAC	5 cut(s)	423, 838, 886, 1232, 1328
RsaNI	GTAC	5 cut(s)	422, 837, 885, 1231, 1327
RseI	CAYNNNNRTG	4 cut(s)	38, 311, 611, 1059
SaqAI	TTAA	3 cut(s)	291, 360, 810
SatI	GCNGC	3 cut(s)	73, 183, 1385
Sau3AI	GATC	3 cut(s)	550, 1017, 1243
Sau96I	GGNCC	1 cut(s)	100
SchI	GAGTC	3 cut(s)	201, 824, 1045
ScrFI	CCNGG	2 cut(s)	270, 1241
SduI	GDGCHC	5 cut(s)	117, 144, 250, 585, 1254
SfaNI	GCATC	4 cut(s)	761, 952, 1001, 1024
SmiMI	CAYNNNNRTG	4 cut(s)	38, 311, 611, 1059
SmlI	CTYRAG	3 cut(s)	116, 963, 996
SmoI	CTYRAG	3 cut(s)	116, 963, 996
SpeI	ACTAGT	1 cut(s)	437
SphI	GCATGC	1 cut(s)	1360
SsiI	CCGC	3 cut(s)	138, 163, 1385
SspMI	CTAG	2 cut(s)	438, 1341
StyD4I	CCNGG	2 cut(s)	268, 1239
StyI	CCWWGG	3 cut(s)	1170, 1206, 1305
TaaI	ACNGT	5 cut(s)	421, 747, 889, 1005, 1417
TaiI	ACGT	2 cut(s)	337, 643
TaqI	TCGA	4 cut(s)	917, 1262, 1280, 1400
TatI	WGTACW	1 cut(s)	884
TauI	GCSGC	1 cut(s)	1387
TfiI	GAWTC	4 cut(s)	1148, 1162, 1373, 1445
Tru1I	TTAA	3 cut(s)	291, 360, 810
Tru9I	TTAA	3 cut(s)	291, 360, 810
TscAI	CASTG	4 cut(s)	40, 397, 605, 1066
TseFI	GTSAC	3 cut(s)	380, 873, 1184
TseI	GCWGC	2 cut(s)	72, 182
Tsp45I	GTSAC	3 cut(s)	380, 873, 1184
TspDTI	ATGAA	4 cut(s)	300, 914, 1140, 1271
TspRI	CASTG	4 cut(s)	40, 397, 605, 1066
Tth111I	GACNNNGTC	1 cut(s)	1415
Van91I	CCANNNNNTGG	1 cut(s)	617
XapI	RAATTY	1 cut(s)	901
XceI	RCATGY	1 cut(s)	1360
XcmI	CCANNNNNNNNNTGG	1 cut(s)	653
XmnI	GAANNNNTTC	1 cut(s)	1286
XspI	CTAG	2 cut(s)	438, 1341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.