AT4G27970

Voltage-dependent anion channel

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
13918165 .. 13920378
2214 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G27970.4

Sequence Viewer

Length: 1560 bp
ATGAATAATCCAAGATCGGTTAGTCCTTTGGTTTCTCCAGCAAACCACTCAGATCTATTAGAAAACCAACGTCAATCCGGTTCTGGAGATTTCTCAAGATTAGAGAAACGAATCGGAGCGAGGAAGATGAAGTTTCATTCCAAGTCTATGCCCCGAGGTGCCATGTTTCTTGATCAAGAAGCATCTAGAAACTTCCACGACAAGAGGTATGACCTATTCAGGACCATGTCCGGGAAACTCGAACGTCAGATATCGAATTTACGTGGGAAACCCACTGAGAGTTCGTTGCAGGATCATAAAGAGATTACTGAATCTTTAACCGCTGATAGATACTTTGATGCTCTTCAAGGCCCCGAGCTTGAAACTCTCAAGGAGAAGGAGAAGATAGTTCTGCCTGAGGACAAAACGTGGCCGTTTCTTCTACGGTTTCCAATCACATCATATGGGATGTGTCTTGGAGTAAGTAGTCAAGCCATCATGTGGAAGACCTTAGCAACCACAGAGGCAGAGAAGTTCTTGCACGTGACTCAAGTGATCAACCACGTGCTCTGGTGGATCTCTCTCCTTCTCCTCCTCGCCGTTTCTATCACTTACCTCTTCAAAACCATCCTCTTCTTTGAGGCGGTTCGCCGTGAGTTTCGGCATCCGATCCGAGTCAACTTCTTCTTCGCTCCTCTTATATCAATCCTCTTCTTGGCACTTGGAATCCCACACTCTATCATCTCACATCTTCCCTCTACACTTTGGTACTTCCTTATGGCTCCCATCTTGTTTCTTGAGATGAAGATTTACGGACAGTGGATGTCTGGTGGACAAAGACGCCTCTCCAAAGTCGCCAACCCTACAAACCACCTTTCCATTGTCGGTAACTTTGCAGGAGCACTTCTAGGAGCATCCATGGGGTTGAAAGAAGGACCAATATTCTTCTTTGCCATAGGGTTGGCTTATTATTTGGTTTTATTTGTGACTCTCTATCAGAGACTTCCCACGAATGAAACCTTACCTAAAGAGCTTCACCCTGTTTTCTTCCTCTTTGTGGCTGCACCAGCCGTCGCTTCCATGGCCTGGACCAAGATCTCTGCCTCTTTCGATCTCGGTTCGCGTCTAGCATACTTCATCTCCTTGTTCTTGTACTTCTCTCTGGTTTGTCGGATTAACCTTTTCCGGGGATTCAAATTCTCGCTAGCTTGGTGGGCTTACACGTTTCCAATGACGGCAGTGGCCAGTGCGACGATCAAATATTCAGACGAAGTCACGGGAGTGGCAACGAAGATACTATCGGTTGTGATGTCGGGAGCAGCAACTCTGACGGTGATAGCTGTGCTTGGGTTGACGGTGATGCATGCTTTTGTCCAACGTGATCTCTTCCCCAATGACGTTGTCATTGCCATAAGTGCAGAACAACCGAAGCAGAAGAGATGGTTCAAACATCTCACAAAAGAAAGTTATGGAAATAATGAGAGATGTCCCAAGATTTTGGATCCGGAAGATAATCAAATAGATTTAGAATCTCCTCCTTTAGTAAATGTAGATAGTTCCACGGTTCAGAATTCAAATTAA

Protein Analysis

519

Amino Acids

58.82

Weight (kDa)

9.36

Isoelectric Point (pI)

38.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SLAC1 PF03595 142 - 387 2.5e-34 Voltage-dependent anion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 158
AccB7I CCANNNNNTGG 2 cut(s) 480, 1065
AccII CGCG 1 cut(s) 1102
AccIII TCCGGA 1 cut(s) 1483
AciI CCGC 2 cut(s) 321, 623
AclWI GGATC 5 cut(s) 300, 563, 643, 1475, 1488
AcoI YGGCCR 2 cut(s) 410, 1221
AcsI RAATTY 3 cut(s) 256, 1175, 1549
AcvI CACGTG 2 cut(s) 523, 544
AcyI GRCGYC 1 cut(s) 820
AfaI GTAC 2 cut(s) 749, 1133
AfiI CCNNNNNNNGG 6 cut(s) 231, 480, 694, 1036, 1065, 1165
AflIII ACRYGT 1 cut(s) 1200
AgsI TTSAA 7 cut(s) 347, 362, 601, 907, 1174, 1426, 1554
AjnI CCWGG 1 cut(s) 1064
AleI CACNNNNGTG 1 cut(s) 1259
AluBI AGCT 4 cut(s) 358, 1012, 1187, 1319
AluI AGCT 4 cut(s) 358, 1012, 1187, 1319
Alw21I GWGCWC 2 cut(s) 549, 883
Alw26I GTCTC 1 cut(s) 973
AlwI GGATC 5 cut(s) 300, 563, 643, 1475, 1488
Ama87I CYCGRG 2 cut(s) 153, 353
Aor13HI TCCGGA 1 cut(s) 1483
AoxI GGCC 4 cut(s) 349, 410, 1062, 1221
ApeKI GCWGC 2 cut(s) 1040, 1298
ApoI RAATTY 3 cut(s) 256, 1175, 1549
AspS9I GGNCC 4 cut(s) 222, 350, 914, 1068
AsuC2I CCSGG 2 cut(s) 232, 1166
AsuHPI GGTGA 3 cut(s) 1007, 1324, 1348
AsuNHI GCTAGC 1 cut(s) 1183
AvaI CYCGRG 2 cut(s) 153, 353
AvaII GGWCC 3 cut(s) 222, 914, 1068
AxyI CCTNAGG 1 cut(s) 396
BalI TGGCCA 1 cut(s) 1223
BamHI GGATCC 1 cut(s) 1480
BanI GGYRCC 1 cut(s) 158
BbrPI CACGTG 2 cut(s) 523, 544
BbsI GAAGAC 1 cut(s) 491
Bbv12I GWGCWC 2 cut(s) 549, 883
BbvI GCAGC 2 cut(s) 1027, 1310
BccI CCATC 4 cut(s) 482, 614, 773, 1413
BceAI ACGGC 5 cut(s) 397, 563, 615, 1034, 1230
BciT130I CCWGG 1 cut(s) 1066
BclI TGATCA 2 cut(s) 172, 534
BcnI CCSGG 2 cut(s) 232, 1166
BcoDI GTCTC 1 cut(s) 973
BfaI CTAG 4 cut(s) 186, 887, 1106, 1184
BglII AGATCT 2 cut(s) 52, 1074
BisI GCNGC 2 cut(s) 1041, 1299
BlsI GCNGC 2 cut(s) 1042, 1300
Bme1390I CCNGG 3 cut(s) 232, 1066, 1166
Bme18I GGWCC 3 cut(s) 222, 914, 1068
BmeT110I CYCGRG 2 cut(s) 153, 353
BmgT120I GGNCC 4 cut(s) 222, 350, 914, 1068
BmiI GGNNCC 4 cut(s) 160, 352, 762, 1482
BmrFI CCNGG 3 cut(s) 232, 1066, 1166
BmsI GCATC 5 cut(s) 191, 328, 652, 902, 1329
BmtI GCTAGC 1 cut(s) 1187
BpiI GAAGAC 1 cut(s) 491
BpmI CTGGAG 2 cut(s) 21, 105
Bpu10I CCTNAGC 1 cut(s) 490
BpuEI CTTGAG 4 cut(s) 79, 353, 513, 797
BpuMI CCSGG 2 cut(s) 232, 1166
BsaAI YACGTR 3 cut(s) 263, 523, 544
BsaHI GRCGYC 1 cut(s) 820
BsaJI CCNNGG 5 cut(s) 154, 897, 1059, 1165, 1539
BsaWI WCCGGW 2 cut(s) 77, 1483
BsaXI ACNNNNNCTCC 2 cut(s) 1103, 1133
Bsc4I CCNNNNNNNGG 6 cut(s) 231, 480, 694, 1036, 1065, 1165
Bse1I ACTGG 1 cut(s) 1224
Bse21I CCTNAGG 1 cut(s) 396
Bse3DI GCAATG 1 cut(s) 1383
BseAI TCCGGA 1 cut(s) 1483
BseBI CCWGG 1 cut(s) 1066
BseDI CCNNGG 5 cut(s) 154, 897, 1059, 1165, 1539
BseGI GGATG 5 cut(s) 453, 606, 643, 807, 893
BseLI CCNNNNNNNGG 6 cut(s) 231, 480, 694, 1036, 1065, 1165
BseMI GCAATG 1 cut(s) 1383
BseMII CTCAG 3 cut(s) 63, 267, 387
BseNI ACTGG 1 cut(s) 1224
BseRI GAGGAG 4 cut(s) 560, 563, 663, 1503
BseXI GCAGC 2 cut(s) 1027, 1310
BsgI GTGCAG 2 cut(s) 1026, 1416
Bsh1236I CGCG 1 cut(s) 1102
BshFI GGCC 4 cut(s) 351, 412, 1064, 1223
BshNI GGYRCC 1 cut(s) 158
BsiHKAI GWGCWC 2 cut(s) 549, 883
BsiHKCI CYCGRG 2 cut(s) 153, 353
BsiSI CCGG 4 cut(s) 78, 231, 1165, 1484
BslFI GGGAC 1 cut(s) 1452
BslI CCNNNNNNNGG 6 cut(s) 231, 480, 694, 1036, 1065, 1165
BsmAI GTCTC 1 cut(s) 973
BsmFI GGGAC 1 cut(s) 1452
BsnI GGCC 4 cut(s) 351, 412, 1064, 1223
BsoBI CYCGRG 2 cut(s) 153, 353
Bsp1286I GDGCHC 2 cut(s) 549, 883
Bsp13I TCCGGA 1 cut(s) 1483
Bsp19I CCATGG 2 cut(s) 897, 1059
BspACI CCGC 2 cut(s) 321, 623
BspANI GGCC 4 cut(s) 351, 412, 1064, 1223
BspCNI CTCAG 3 cut(s) 62, 268, 388
BspEI TCCGGA 1 cut(s) 1483
BspFNI CGCG 1 cut(s) 1102
BspLI GGNNCC 4 cut(s) 160, 352, 762, 1482
BspOI GCTAGC 1 cut(s) 1187
BspPI GGATC 5 cut(s) 300, 563, 643, 1475, 1488
BspQI GCTCTTC 1 cut(s) 348
BspT107I GGYRCC 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 1383
BsrI ACTGG 1 cut(s) 1224
BssECI CCNNGG 5 cut(s) 154, 897, 1059, 1165, 1539
BssNI GRCGYC 1 cut(s) 820
BssT1I CCWWGG 2 cut(s) 897, 1059
Bst2UI CCWGG 1 cut(s) 1066
Bst4CI ACNGT 5 cut(s) 426, 798, 1312, 1336, 1543
Bst6I CTCTTC 6 cut(s) 348, 602, 617, 695, 1370, 1409
BstACI GRCGYC 1 cut(s) 820
BstBAI YACGTR 3 cut(s) 263, 523, 544
BstC8I GCNNGC 2 cut(s) 1185, 1344
BstDEI CTNAG 4 cut(s) 49, 276, 396, 490
BstDSI CCRYGG 3 cut(s) 897, 1059, 1539
BstF5I GGATG 5 cut(s) 453, 606, 643, 807, 893
BstFNI CGCG 1 cut(s) 1102
BstMAI GTCTC 1 cut(s) 973
BstMWI GCNNNNNNNGC 4 cut(s) 1046, 1061, 1193, 1394
BstNI CCWGG 1 cut(s) 1066
BstNSI RCATGY 1 cut(s) 1346
BstSCI CCNGG 3 cut(s) 230, 1064, 1164
BstUI CGCG 1 cut(s) 1102
BstV1I GCAGC 2 cut(s) 1027, 1310
BstV2I GAAGAC 1 cut(s) 491
BstX2I RGATCY 4 cut(s) 52, 555, 1074, 1480
BstXI CCANNNNNNTGG 2 cut(s) 940, 1477
BstYI RGATCY 4 cut(s) 52, 555, 1074, 1480
Bsu36I CCTNAGG 1 cut(s) 396
BsuRI GGCC 4 cut(s) 351, 412, 1064, 1223
BtgI CCRYGG 3 cut(s) 897, 1059, 1539
BtsCI GGATG 5 cut(s) 453, 606, 643, 807, 893
BtsI GCAGTG 1 cut(s) 1224
BtsIMutI CAGTG 4 cut(s) 273, 803, 1224, 1231
Cac8I GCNNGC 2 cut(s) 1185, 1344
Cfr13I GGNCC 4 cut(s) 222, 350, 914, 1068
CseI GACGC 2 cut(s) 828, 1091
Csp6I GTAC 2 cut(s) 748, 1132
CviAII CATG 6 cut(s) 163, 226, 478, 898, 1060, 1343
CviQI GTAC 2 cut(s) 748, 1132
DdeI CTNAG 4 cut(s) 49, 276, 396, 490
EaeI YGGCCR 2 cut(s) 410, 1221
Eam1104I CTCTTC 6 cut(s) 348, 602, 617, 695, 1370, 1409
EarI CTCTTC 6 cut(s) 348, 602, 617, 695, 1370, 1409
Eco130I CCWWGG 2 cut(s) 897, 1059
Eco32I GATATC 1 cut(s) 252
Eco47I GGWCC 3 cut(s) 222, 914, 1068
Eco72I CACGTG 2 cut(s) 523, 544
Eco81I CCTNAGG 1 cut(s) 396
Eco88I CYCGRG 2 cut(s) 153, 353
EcoO109I RGGNCCY 1 cut(s) 350
EcoRI GAATTC 1 cut(s) 1549
EcoRII CCWGG 1 cut(s) 1064
EcoRV GATATC 1 cut(s) 252
EcoT14I CCWWGG 2 cut(s) 897, 1059
EcoT22I ATGCAT 1 cut(s) 1344
ErhI CCWWGG 2 cut(s) 897, 1059
FaeI CATG 6 cut(s) 166, 229, 481, 901, 1063, 1346
FaqI GGGAC 1 cut(s) 1452
FatI CATG 6 cut(s) 162, 225, 477, 897, 1059, 1342
FauNDI CATATG 1 cut(s) 442
FbaI TGATCA 2 cut(s) 172, 534
Fnu4HI GCNGC 2 cut(s) 1041, 1299
FokI GGATG 5 cut(s) 460, 593, 630, 814, 880
Fsp4HI GCNGC 2 cut(s) 1041, 1299
FspBI CTAG 4 cut(s) 186, 887, 1106, 1184
GluI GCNGC 2 cut(s) 1041, 1299
GsuI CTGGAG 2 cut(s) 21, 105
HaeIII GGCC 4 cut(s) 351, 412, 1064, 1223
HapII CCGG 4 cut(s) 78, 231, 1165, 1484
HgaI GACGC 2 cut(s) 828, 1091
Hin1I GRCGYC 1 cut(s) 820
Hin1II CATG 6 cut(s) 166, 229, 481, 901, 1063, 1346
HincII GTYRAC 2 cut(s) 658, 1332
HindII GTYRAC 2 cut(s) 658, 1332
HinfI GANTC 8 cut(s) 111, 311, 526, 654, 705, 967, 1170, 1508
HpaII CCGG 4 cut(s) 78, 231, 1165, 1484
HphI GGTGA 3 cut(s) 1007, 1324, 1348
Hpy166II GTNNAC 3 cut(s) 658, 812, 1332
Hpy188III TCNNGA 9 cut(s) 84, 96, 170, 176, 186, 220, 776, 1293, 1484
Hpy8I GTNNAC 3 cut(s) 658, 812, 1332
Hpy99I CGWCG 2 cut(s) 1055, 1234
HpyAV CCTTC 3 cut(s) 370, 575, 905
HpyCH4III ACNGT 5 cut(s) 426, 798, 1312, 1336, 1543
HpyCH4IV ACGT 9 cut(s) 70, 244, 262, 407, 522, 543, 1202, 1357, 1377
HpyCH4V TGCA 6 cut(s) 289, 520, 875, 1043, 1342, 1397
HpyF10VI GCNNNNNNNGC 4 cut(s) 1046, 1061, 1193, 1394
HpyF3I CTNAG 4 cut(s) 49, 276, 396, 490
HpySE526I ACGT 9 cut(s) 70, 244, 262, 407, 522, 543, 1202, 1357, 1377
Hsp92I GRCGYC 1 cut(s) 820
Hsp92II CATG 6 cut(s) 166, 229, 481, 901, 1063, 1346
Kpn2I TCCGGA 1 cut(s) 1483
Ksp22I TGATCA 2 cut(s) 172, 534
LguI GCTCTTC 1 cut(s) 348
LmnI GCTCC 6 cut(s) 116, 676, 766, 878, 890, 1295
Lsp1109I GCAGC 2 cut(s) 1027, 1310
LweI GCATC 5 cut(s) 191, 328, 652, 902, 1329
MaeI CTAG 4 cut(s) 186, 887, 1106, 1184
MaeII ACGT 9 cut(s) 70, 244, 262, 407, 522, 543, 1202, 1357, 1377
MaeIII GTNAC 4 cut(s) 523, 866, 964, 1252
MflI RGATCY 4 cut(s) 52, 555, 1074, 1480
MhlI GDGCHC 2 cut(s) 549, 883
MlsI TGGCCA 1 cut(s) 1223
MluCI AATT 4 cut(s) 256, 1175, 1549, 1555
MluNI TGGCCA 1 cut(s) 1223
MlyI GAGTC 3 cut(s) 520, 663, 961
MmeI TCCRAC 2 cut(s) 1130, 1378
Mox20I TGGCCA 1 cut(s) 1223
Mph1103I ATGCAT 1 cut(s) 1344
MroI TCCGGA 1 cut(s) 1483
MscI TGGCCA 1 cut(s) 1223
MseI TTAA 3 cut(s) 317, 1155, 1558
MslI CAYNNNNRTG 1 cut(s) 1259
Msp20I TGGCCA 1 cut(s) 1223
MspA1I CMGCKG 1 cut(s) 323
MspI CCGG 4 cut(s) 78, 231, 1165, 1484
MspR9I CCNGG 3 cut(s) 232, 1066, 1166
MvaI CCWGG 1 cut(s) 1066
MvnI CGCG 1 cut(s) 1102
MwoI GCNNNNNNNGC 4 cut(s) 1046, 1061, 1193, 1394
NciI CCSGG 2 cut(s) 232, 1166
NcoI CCATGG 2 cut(s) 897, 1059
NdeI CATATG 1 cut(s) 442
NheI GCTAGC 1 cut(s) 1183
NlaIII CATG 6 cut(s) 166, 229, 481, 901, 1063, 1346
NlaIV GGNNCC 4 cut(s) 160, 352, 762, 1482
NmuCI GTSAC 3 cut(s) 523, 964, 1252
NsiI ATGCAT 1 cut(s) 1344
NspI RCATGY 1 cut(s) 1346
OliI CACNNNNGTG 1 cut(s) 1259
PaeI GCATGC 1 cut(s) 1346
PciSI GCTCTTC 1 cut(s) 348
PfeI GAWTC 5 cut(s) 111, 311, 705, 1170, 1508
PflFI GACNNNGTC 3 cut(s) 226, 1250, 1379
PflMI CCANNNNNTGG 2 cut(s) 480, 1065
PfoI TCCNGGA 1 cut(s) 230
PkrI GCNGC 2 cut(s) 1042, 1300
PleI GAGTC 3 cut(s) 520, 662, 961
PmaCI CACGTG 2 cut(s) 523, 544
PmlI CACGTG 2 cut(s) 523, 544
PpsI GAGTC 3 cut(s) 520, 662, 961
Ppu21I YACGTR 3 cut(s) 263, 523, 544
Psp6I CCWGG 1 cut(s) 1064
PspCI CACGTG 2 cut(s) 523, 544
PspGI CCWGG 1 cut(s) 1064
PspN4I GGNNCC 4 cut(s) 160, 352, 762, 1482
PspPI GGNCC 4 cut(s) 222, 350, 914, 1068
PsuI RGATCY 4 cut(s) 52, 555, 1074, 1480
PsyI GACNNNGTC 3 cut(s) 226, 1250, 1379
RsaI GTAC 2 cut(s) 749, 1133
RsaNI GTAC 2 cut(s) 748, 1132
RseI CAYNNNNRTG 1 cut(s) 1259
SapI GCTCTTC 1 cut(s) 348
SaqAI TTAA 3 cut(s) 317, 1155, 1558
SatI GCNGC 2 cut(s) 1041, 1299
Sau96I GGNCC 4 cut(s) 222, 350, 914, 1068
SchI GAGTC 3 cut(s) 520, 663, 961
ScrFI CCNGG 3 cut(s) 232, 1066, 1166
SduI GDGCHC 2 cut(s) 549, 883
SfaNI GCATC 5 cut(s) 191, 328, 652, 902, 1329
SinI GGWCC 3 cut(s) 222, 914, 1068
SmiMI CAYNNNNRTG 1 cut(s) 1259
SmlI CTYRAG 4 cut(s) 94, 368, 528, 776
SmoI CTYRAG 4 cut(s) 94, 368, 528, 776
SphI GCATGC 1 cut(s) 1346
Sse9I AATT 4 cut(s) 256, 1175, 1549, 1555
SsiI CCGC 2 cut(s) 321, 623
SspI AATATT 2 cut(s) 921, 1241
SspMI CTAG 4 cut(s) 186, 887, 1106, 1184
StyD4I CCNGG 3 cut(s) 230, 1064, 1164
StyI CCWWGG 2 cut(s) 897, 1059
TaaI ACNGT 5 cut(s) 426, 798, 1312, 1336, 1543
TaiI ACGT 9 cut(s) 73, 247, 265, 410, 525, 546, 1205, 1360, 1380
TaqI TCGA 3 cut(s) 240, 254, 1089
TasI AATT 4 cut(s) 256, 1175, 1549, 1555
TatI WGTACW 1 cut(s) 1131
TfiI GAWTC 5 cut(s) 111, 311, 705, 1170, 1508
Tru1I TTAA 3 cut(s) 317, 1155, 1558
Tru9I TTAA 3 cut(s) 317, 1155, 1558
TscAI CASTG 4 cut(s) 280, 803, 1224, 1231
TseFI GTSAC 3 cut(s) 523, 964, 1252
TseI GCWGC 2 cut(s) 1040, 1298
Tsp45I GTSAC 3 cut(s) 523, 964, 1252
TspDTI ATGAA 6 cut(s) 17, 125, 143, 797, 1008, 1105
TspGWI ACGGA 1 cut(s) 807
TspRI CASTG 4 cut(s) 280, 803, 1224, 1231
Tth111I GACNNNGTC 3 cut(s) 226, 1250, 1379
Van91I CCANNNNNTGG 2 cut(s) 480, 1065
VpaK11BI GGWCC 3 cut(s) 222, 914, 1068
XapI RAATTY 3 cut(s) 256, 1175, 1549
XbaI TCTAGA 1 cut(s) 185
XceI RCATGY 1 cut(s) 1346
XspI CTAG 4 cut(s) 186, 887, 1106, 1184
Zsp2I ATGCAT 1 cut(s) 1344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.