Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000966

Physical Location & Seq

Genomic Coordinates Reverse (-)

51768940 .. 51770885

Gene Structure 1946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0413000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGAAAGTAAACAGTTTGCAATATTCTTCCTTCTGATATTTGCTGGTTTAGTATTGCTCGTGTTCAATCAAAGCTCGAACGGATCCAATCCATTCTTTCTTGCCCGCCAAATATGTCAAACCTCTAAACAGGTCAATGACACGAGCAGGAGCGATGCTCTTGAATCAGCTTTGTCTGAGGCTTCCATGGAAAACAAGACTCTGATCATTGCGATTATAAACAAAGCCTACGTAGAAGGAGATAAGTCCATGCTTGACTTGTTTTTAGATGGTTTTTGGCTTGGTGAAGACACAAGGAACTTGATTAATCACCTACTTCTTGTGGCGGCCGATCAAACATCCTTTGAACGCTGCAAGTTTCTCCATCTTCACTGCTACAAGCTTGAGACTGCCGGAGTCGATTTTGATGCTGAGGAAGTGTACATGTCTCAAGATTTTATCAAGATGATGTGGAGGAGAACTCTCTTTCTCGGAGAGACACTCAAGAAAGGCTATAGTTTCATATTCACGGATGCGGATGTAATGTGGCTACGGAATCCATTTCCAAGGCTCAAGTACAACCAAAGCATAGATAGCTTAGATCTCCAGATCAGTACTGATAAATTCAACGGCGATCAGTGGTCTGAAGCCAACCCCATCAACTCAGGCTTCTACATTGTGCGGTCCAACAACAGAACAATCTCATTATTCGACAAGTGGTACGCCAGGAAAAACGACTCCGCCGGATTGAAAGAGCAGGATGTTCTAAACAACATGATCCGGGAAGGTGTTTTCAAGGAGTTAGGCCTCAGAGTGAGGTTTTTGGACACCCTTTATTTCAGTGGCTTTTGTGAAGTCAGCAGGGACTTCAAAGCTGTCACAACCGTTCATGCTAACTGTTGCCGCACAATAAGCGCCAAGGTGGTGGATCTGACGGCTGTGATTCACGACTGGAAGAGGTTCAAGAGCTTAACTAACTCAAATCAGACGTCGATTTTGCAATGGACTAACCATGTAGCCTGCCATAACTCCTGGAAACGTCACCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0006873 GO:0006950 GO:0006970 GO:0008150 GO:0008308 GO:0008509 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0015075 GO:0015103 GO:0015267 GO:0015318 GO:0015698 GO:0016020 GO:0019725 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0034220 GO:0042221 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071944 GO:0098656 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLAC1

Protein Analysis

342

Amino Acids

39.52

Weight (kDa)

7.61

Isoelectric Point (pI)

34.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleotid_trans	PF03407	101 - 303	3.7e-64	Nucleotide-diphospho-sugar transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27970 AT4G27970 AT4G27970 AT4G27970 AT4G27970 AT4G27970 AT5G24030 AT5G24030
fragaria_vesca	FvH4_7g30630 FvH4_7g30630 FvH4_7g30630 FvH4_7g30640 FvH4_7g30640 FvH4_7g30640 FvH4_7g30640
malus_domestica	MD01G1211400.v1.1 MD01G1211500.v1.1 MD07G1282100.v1.1
prunus_persica	Prupe.2G291700_v2.0.a1 Prupe.2G304200_v2.0.a1 Prupe.2G304300_v2.0.a1 Prupe.2G304300_v2.0.a1 Prupe.2G304300_v2.0.a1
pyrus_communis	pycom01g22190 pycom01g22200 pycom07g25600
rosa_chinensis	RchiOBHm_Chr1g0369441 RchiOBHm_Chr1g0379541 RchiOBHm_Chr1g0379571
rosa_laevigata	RLG00000026393 RLG00000026394 RLG00000027130
rosa_multiflora	Rmu_co8329679.1_g000001 Rmu_sc0000402.1_g000002 Rmu_sc0000402.1_g000005 Rmu_sc0001985.1_g000002 Rmu_sc0003612.1_g000018 Rmu_sc0024534.1_g000001
rosa_roxburghii	Rroxscaffold_4G00280080 Rroxscaffold_4G00280090 Rroxscaffold_4G00287650
rosa_rugosa	Rorug01G0350200 Rorug01G0350200 Rorug01G0413000
rosa_samantha	Rh1AG357900 Rh1AG435500 Rh1AG435600 Rh1BG322000 Rh1BG393100 Rh1BG393200 Rh1CG335700 Rh1CG405800 Rh1CG405900 Rh1DG352600 Rh1DG423900 Rh1DG424000
rosa_wichuraiana	Rw0G019950 Rw1G031570 Rw1G031580 Rw1G038040 Rw1G038050 Rw1G038070 Rw1G038080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	218
AatII	GACGTC	1 cut(s)	971
AciI	CCGC	6 cut(s)	106, 326, 515, 661, 720, 883
AclWI	GGATC	4 cut(s)	78, 91, 751, 915
AcoI	YGGCCR	1 cut(s)	327
AcsI	RAATTY	1 cut(s)	602
AcuI	CTGAAG	1 cut(s)	645
AcyI	GRCGYC	1 cut(s)	968
AfaI	GTAC	4 cut(s)	422, 557, 595, 701
AflIII	ACRYGT	1 cut(s)	423
AgsI	TTSAA	8 cut(s)	67, 164, 347, 607, 730, 775, 850, 943
AjnI	CCWGG	2 cut(s)	704, 1010
AluBI	AGCT	6 cut(s)	75, 170, 382, 576, 854, 948
AluI	AGCT	6 cut(s)	75, 170, 382, 576, 854, 948
Alw26I	GTCTC	3 cut(s)	380, 432, 470
AlwI	GGATC	4 cut(s)	78, 91, 751, 915
AoxI	GGCC	2 cut(s)	327, 784
ApeKI	GCWGC	1 cut(s)	351
ApoI	RAATTY	1 cut(s)	602
ArsI	GACNNNNNNTTYG	4 cut(s)	953, 958, 985, 990
AseI	ATTAAT	1 cut(s)	306
Asp700I	GAANNNNTTC	1 cut(s)	938
AspLEI	GCGC	1 cut(s)	896
AspS9I	GGNCC	1 cut(s)	663
AsuC2I	CCSGG	1 cut(s)	761
AsuHPI	GGTGA	3 cut(s)	296, 302, 1013
AvaII	GGWCC	1 cut(s)	663
BamHI	GGATCC	1 cut(s)	83
BauI	CACGAG	2 cut(s)	59, 142
BbsI	GAAGAC	1 cut(s)	294
BbvCI	CCTCAGC	1 cut(s)	411
BbvI	GCAGC	1 cut(s)	338
BccI	CCATC	3 cut(s)	263, 372, 644
BceAI	ACGGC	2 cut(s)	625, 930
BcgI	CGANNNNNNTGC	2 cut(s)	389, 423
BciT130I	CCWGG	2 cut(s)	706, 1012
BclI	TGATCA	1 cut(s)	204
BcnI	CCSGG	1 cut(s)	761
BcoDI	GTCTC	3 cut(s)	380, 432, 470
BfmI	CTRYAG	1 cut(s)	493
BfoI	RGCGCY	1 cut(s)	897
BglII	AGATCT	1 cut(s)	580
BisI	GCNGC	3 cut(s)	327, 352, 883
BlsI	GCNGC	3 cut(s)	328, 353, 884
BmcAI	AGTACT	1 cut(s)	595
Bme1390I	CCNGG	3 cut(s)	706, 761, 1012
Bme18I	GGWCC	1 cut(s)	663
BmgT120I	GGNCC	1 cut(s)	663
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	3 cut(s)	706, 761, 1012
BmsI	GCATC	3 cut(s)	145, 397, 502
BpiI	GAAGAC	1 cut(s)	294
BplI	GAGNNNNNCTC	6 cut(s)	142, 174, 445, 477, 465, 497
BpmI	CTGGAG	1 cut(s)	569
Bpu10I	CCTNAGC	1 cut(s)	411
BpuEI	CTTGAG	4 cut(s)	404, 414, 467, 536
BpuMI	CCSGG	1 cut(s)	761
BsaAI	YACGTR	1 cut(s)	232
BsaHI	GRCGYC	1 cut(s)	968
BsaJI	CCNNGG	3 cut(s)	186, 545, 897
Bse1I	ACTGG	1 cut(s)	935
Bse3DI	GCAATG	2 cut(s)	207, 986
BseBI	CCWGG	2 cut(s)	706, 1012
BseDI	CCNNGG	3 cut(s)	186, 545, 897
BseGI	GGATG	4 cut(s)	338, 517, 523, 745
BseMI	GCAATG	2 cut(s)	207, 986
BseMII	CTCAG	4 cut(s)	168, 402, 657, 802
BseNI	ACTGG	1 cut(s)	935
BseRI	GAGGAG	1 cut(s)	469
BseX3I	CGGCCG	1 cut(s)	327
BseXI	GCAGC	1 cut(s)	338
Bsh1285I	CGRYCG	1 cut(s)	330
BshFI	GGCC	2 cut(s)	329, 786
BsiEI	CGRYCG	1 cut(s)	330
BsiSI	CCGG	3 cut(s)	393, 723, 760
BslFI	GGGAC	1 cut(s)	857
BsmAI	GTCTC	3 cut(s)	380, 432, 470
BsmFI	GGGAC	1 cut(s)	857
BsnI	GGCC	2 cut(s)	329, 786
Bsp1407I	TGTACA	1 cut(s)	420
Bsp143I	GATC	8 cut(s)	83, 204, 331, 580, 588, 613, 756, 907
Bsp19I	CCATGG	1 cut(s)	186
BspACI	CCGC	6 cut(s)	106, 326, 515, 661, 720, 883
BspANI	GGCC	2 cut(s)	329, 786
BspCNI	CTCAG	4 cut(s)	169, 403, 656, 801
BspLI	GGNNCC	1 cut(s)	85
BspPI	GGATC	4 cut(s)	78, 91, 751, 915
BsrDI	GCAATG	2 cut(s)	207, 986
BsrGI	TGTACA	1 cut(s)	420
BsrI	ACTGG	1 cut(s)	935
BssECI	CCNNGG	3 cut(s)	186, 545, 897
BssMI	GATC	8 cut(s)	83, 204, 331, 580, 588, 613, 756, 907
BssNI	GRCGYC	1 cut(s)	968
BssSI	CACGAG	2 cut(s)	59, 142
BssT1I	CCWWGG	3 cut(s)	186, 545, 897
Bst2BI	CACGAG	2 cut(s)	59, 142
Bst2UI	CCWGG	2 cut(s)	706, 1012
Bst4CI	ACNGT	4 cut(s)	15, 865, 878, 1025
Bst6I	CTCTTC	1 cut(s)	929
BstACI	GRCGYC	1 cut(s)	968
BstAUI	TGTACA	1 cut(s)	420
BstBAI	YACGTR	1 cut(s)	232
BstC8I	GCNNGC	2 cut(s)	106, 1000
BstDEI	CTNAG	5 cut(s)	177, 411, 577, 643, 788
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	4 cut(s)	338, 517, 523, 745
BstH2I	RGCGCY	1 cut(s)	897
BstHHI	GCGC	1 cut(s)	896
BstKTI	GATC	8 cut(s)	86, 207, 334, 583, 591, 616, 759, 910
BstMAI	GTCTC	3 cut(s)	380, 432, 470
BstMBI	GATC	8 cut(s)	83, 204, 331, 580, 588, 613, 756, 907
BstMCI	CGRYCG	1 cut(s)	330
BstMWI	GCNNNNNNNGC	2 cut(s)	573, 891
BstNI	CCWGG	2 cut(s)	706, 1012
BstNSI	RCATGY	1 cut(s)	427
BstSCI	CCNGG	3 cut(s)	704, 759, 1010
BstSFI	CTRYAG	1 cut(s)	493
BstSNI	TACGTA	1 cut(s)	232
BstV1I	GCAGC	1 cut(s)	338
BstV2I	GAAGAC	1 cut(s)	294
BstX2I	RGATCY	3 cut(s)	83, 580, 907
BstXI	CCANNNNNNTGG	1 cut(s)	904
BstYI	RGATCY	3 cut(s)	83, 580, 907
BstZI	CGGCCG	1 cut(s)	327
BsuRI	GGCC	2 cut(s)	329, 786
BtgI	CCRYGG	1 cut(s)	186
BtgZI	GCGATG	1 cut(s)	168
BtsCI	GGATG	4 cut(s)	338, 517, 523, 745
BtsI	GCAGTG	1 cut(s)	370
BtsIMutI	CAGTG	3 cut(s)	370, 623, 826
Cac8I	GCNNGC	2 cut(s)	106, 1000
CfoI	GCGC	1 cut(s)	896
Cfr13I	GGNCC	1 cut(s)	663
Csp6I	GTAC	4 cut(s)	421, 556, 594, 700
CviAII	CATG	6 cut(s)	187, 250, 424, 754, 869, 992
CviQI	GTAC	4 cut(s)	421, 556, 594, 700
DdeI	CTNAG	5 cut(s)	177, 411, 577, 643, 788
DpnI	GATC	8 cut(s)	85, 206, 333, 582, 590, 615, 758, 909
DpnII	GATC	8 cut(s)	83, 204, 331, 580, 588, 613, 756, 907
EaeI	YGGCCR	1 cut(s)	327
EagI	CGGCCG	1 cut(s)	327
Eam1104I	CTCTTC	1 cut(s)	929
EarI	CTCTTC	1 cut(s)	929
EciI	GGCGGA	1 cut(s)	709
EclXI	CGGCCG	1 cut(s)	327
Eco105I	TACGTA	1 cut(s)	232
Eco130I	CCWWGG	3 cut(s)	186, 545, 897
Eco147I	AGGCCT	1 cut(s)	786
Eco47I	GGWCC	1 cut(s)	663
Eco52I	CGGCCG	1 cut(s)	327
Eco57I	CTGAAG	1 cut(s)	645
EcoRII	CCWGG	2 cut(s)	704, 1010
EcoT14I	CCWWGG	3 cut(s)	186, 545, 897
ErhI	CCWWGG	3 cut(s)	186, 545, 897
FaeI	CATG	6 cut(s)	190, 253, 427, 757, 872, 995
FaqI	GGGAC	1 cut(s)	857
FatI	CATG	6 cut(s)	186, 249, 423, 753, 868, 991
FauI	CCCGC	1 cut(s)	113
FbaI	TGATCA	1 cut(s)	204
Fnu4HI	GCNGC	3 cut(s)	327, 352, 883
FokI	GGATG	4 cut(s)	325, 524, 530, 752
Fsp4HI	GCNGC	3 cut(s)	327, 352, 883
GlaI	GCGC	1 cut(s)	895
GluI	GCNGC	3 cut(s)	327, 352, 883
GsuI	CTGGAG	1 cut(s)	569
HaeII	RGCGCY	1 cut(s)	897
HaeIII	GGCC	2 cut(s)	329, 786
HapII	CCGG	3 cut(s)	393, 723, 760
HhaI	GCGC	1 cut(s)	896
Hin1I	GRCGYC	1 cut(s)	968
Hin1II	CATG	6 cut(s)	190, 253, 427, 757, 872, 995
Hin6I	GCGC	1 cut(s)	894
HinP1I	GCGC	1 cut(s)	894
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	6 cut(s)	164, 199, 396, 535, 716, 922
HpaII	CCGG	3 cut(s)	393, 723, 760
HphI	GGTGA	3 cut(s)	296, 302, 1013
Hpy166II	GTNNAC	2 cut(s)	11, 421
Hpy188I	TCNGA	8 cut(s)	36, 178, 204, 473, 625, 791, 912, 966
Hpy188III	TCNNGA	7 cut(s)	161, 431, 442, 484, 586, 926, 943
Hpy8I	GTNNAC	2 cut(s)	11, 421
Hpy99I	CGWCG	1 cut(s)	973
HpyAV	CCTTC	3 cut(s)	41, 230, 758
HpyCH4III	ACNGT	4 cut(s)	15, 865, 878, 1025
HpyCH4IV	ACGT	3 cut(s)	231, 968, 1018
HpyCH4V	TGCA	3 cut(s)	20, 354, 979
HpyF10VI	GCNNNNNNNGC	2 cut(s)	573, 891
HpyF3I	CTNAG	5 cut(s)	177, 411, 577, 643, 788
HpySE526I	ACGT	3 cut(s)	231, 968, 1018
Hsp92I	GRCGYC	1 cut(s)	968
Hsp92II	CATG	6 cut(s)	190, 253, 427, 757, 872, 995
HspAI	GCGC	1 cut(s)	894
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	8 cut(s)	83, 204, 331, 580, 588, 613, 756, 907
LmnI	GCTCC	1 cut(s)	150
Lsp1109I	GCAGC	1 cut(s)	338
LweI	GCATC	3 cut(s)	145, 397, 502
MaeII	ACGT	3 cut(s)	231, 968, 1018
MaeIII	GTNAC	2 cut(s)	856, 1019
MalI	GATC	8 cut(s)	85, 206, 333, 582, 590, 615, 758, 909
MboI	GATC	8 cut(s)	83, 204, 331, 580, 588, 613, 756, 907
MboII	GAAGA	4 cut(s)	19, 299, 359, 946
MflI	RGATCY	3 cut(s)	83, 580, 907
MluCI	AATT	1 cut(s)	602
MlyI	GAGTC	3 cut(s)	193, 405, 710
MmeI	TCCRAC	1 cut(s)	690
MnlI	CCTC	7 cut(s)	133, 172, 406, 447, 789, 797, 930
MroXI	GAANNNNTTC	1 cut(s)	938
MseI	TTAA	3 cut(s)	306, 950, 1027
MspI	CCGG	3 cut(s)	393, 723, 760
MspR9I	CCNGG	3 cut(s)	706, 761, 1012
MvaI	CCWGG	2 cut(s)	706, 1012
MwoI	GCNNNNNNNGC	2 cut(s)	573, 891
NciI	CCSGG	1 cut(s)	761
NcoI	CCATGG	1 cut(s)	186
NdeII	GATC	8 cut(s)	83, 204, 331, 580, 588, 613, 756, 907
NlaIII	CATG	6 cut(s)	190, 253, 427, 757, 872, 995
NlaIV	GGNNCC	1 cut(s)	85
NmuCI	GTSAC	2 cut(s)	856, 1019
NspI	RCATGY	1 cut(s)	427
PceI	AGGCCT	1 cut(s)	786
PciI	ACATGT	1 cut(s)	423
PdmI	GAANNNNTTC	1 cut(s)	938
PfeI	GAWTC	3 cut(s)	164, 535, 922
PfoI	TCCNGGA	2 cut(s)	759, 1010
PkrI	GCNGC	3 cut(s)	328, 353, 884
PleI	GAGTC	3 cut(s)	193, 404, 710
PpsI	GAGTC	3 cut(s)	193, 404, 710
Ppu21I	YACGTR	1 cut(s)	232
PscI	ACATGT	1 cut(s)	423
PshBI	ATTAAT	1 cut(s)	306
PsiI	TTATAA	1 cut(s)	218
Psp6I	CCWGG	2 cut(s)	704, 1010
PspGI	CCWGG	2 cut(s)	704, 1010
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	663
PsuI	RGATCY	3 cut(s)	83, 580, 907
RsaI	GTAC	4 cut(s)	422, 557, 595, 701
RsaNI	GTAC	4 cut(s)	421, 556, 594, 700
SaqAI	TTAA	3 cut(s)	306, 950, 1027
SatI	GCNGC	3 cut(s)	327, 352, 883
Sau3AI	GATC	8 cut(s)	83, 204, 331, 580, 588, 613, 756, 907
Sau96I	GGNCC	1 cut(s)	663
ScaI	AGTACT	1 cut(s)	595
SchI	GAGTC	3 cut(s)	193, 405, 710
ScrFI	CCNGG	3 cut(s)	706, 761, 1012
SfaNI	GCATC	3 cut(s)	145, 397, 502
SfcI	CTRYAG	1 cut(s)	493
SinI	GGWCC	1 cut(s)	663
SmlI	CTYRAG	4 cut(s)	383, 429, 482, 551
SmoI	CTYRAG	4 cut(s)	383, 429, 482, 551
SnaBI	TACGTA	1 cut(s)	232
Sse9I	AATT	1 cut(s)	602
SseBI	AGGCCT	1 cut(s)	786
SsiI	CCGC	6 cut(s)	106, 326, 515, 661, 720, 883
SspI	AATATT	1 cut(s)	24
StuI	AGGCCT	1 cut(s)	786
StyD4I	CCNGG	3 cut(s)	704, 759, 1010
StyI	CCWWGG	3 cut(s)	186, 545, 897
TaaI	ACNGT	4 cut(s)	15, 865, 878, 1025
TaiI	ACGT	3 cut(s)	234, 971, 1021
TaqI	TCGA	4 cut(s)	77, 399, 690, 971
TasI	AATT	1 cut(s)	602
TatI	WGTACW	3 cut(s)	420, 555, 593
TauI	GCSGC	2 cut(s)	329, 885
TfiI	GAWTC	3 cut(s)	164, 535, 922
Tru1I	TTAA	3 cut(s)	306, 950, 1027
Tru9I	TTAA	3 cut(s)	306, 950, 1027
TscAI	CASTG	3 cut(s)	377, 623, 826
TseFI	GTSAC	2 cut(s)	856, 1019
TseI	GCWGC	1 cut(s)	351
Tsp45I	GTSAC	2 cut(s)	856, 1019
TspDTI	ATGAA	2 cut(s)	490, 857
TspGWI	ACGGA	3 cut(s)	96, 524, 547
TspRI	CASTG	3 cut(s)	377, 623, 826
VpaK11BI	GGWCC	1 cut(s)	663
VspI	ATTAAT	1 cut(s)	306
XapI	RAATTY	1 cut(s)	602
XceI	RCATGY	1 cut(s)	427
XmnI	GAANNNNTTC	1 cut(s)	938
ZraI	GACGTC	1 cut(s)	969
ZrmI	AGTACT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.