Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000966

Physical Location & Seq

Genomic Coordinates Forward (+)

46784129 .. 46787559

Gene Structure 3431 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0350200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGACGACTACACGAGGGAGATGATGGACCTCAAGACCCTCGTCACTCGGACCCTCGAGAAGAAGGGCGTCCTCGCCAAGATCCGGGCTGAGCTGAGAGCAAGTGTGTTCGAGGCAATTGAAGAGGAGGACAAGGTGATTGAGAAAGACGAAGGCTTGCCTCCGGCGCTGTTGGGTAGCTGCAACGATCGTGCCAAGCAGCTCCATGCTTCTCCTTCGGGAAGGTTGCTTACGGCATTGATATGCGAATACTTAGACTGGGCGCAGCTTAGCCACACGCTAAAAGTTTATCTGCCCGAGTGTAATTTGCAAAAGGATTCTTGGAAATCTGAGTTGAAGGACTTCAGTAACAAGAATGGATATGACCTTAACAGAAATGGGGATAGTGGTCCCTTGCTTTTGGATGTGCTTGAAGGATTTTTGAAGTTTGAGAATTTATCTCAGACTAGGGGTACTGGAAGGAGGCTGACTACTTCAGAAGCAGAGTCCTTATCCAATTTAGACTCTCGGAACATGCGAAGACCTTCTTCATCATCTGTTGCTGGAGGCCTACCTCCACTTGGAAGGCCTGGTACTGCTTCCCAGTCATCTGATCGAAGAGGTGGGTCCTCCATGTCTAGCCACAGGAAAGATGATTACAATTGGAGATACGATGAAGAACTTCCGGAAGATGTCCTCCGAGCTTCAAGTGCCATGGAAAACCTTCAATTGGATAAAAAAGCTCGAAATCTAACCACATCCTGGCGGCACGCCGGAGATGGAAGTAGTGAGGACGACAGCAGGTCAGACCAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0006873 GO:0006950 GO:0006970 GO:0008150 GO:0008308 GO:0008509 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0015075 GO:0015103 GO:0015267 GO:0015318 GO:0015698 GO:0016020 GO:0019725 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0034220 GO:0042221 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071944 GO:0098656 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLAC1

Protein Analysis

265

Amino Acids

29.66

Weight (kDa)

5.43

Isoelectric Point (pI)

59.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LisH_2	PF16045	77 - 103	1e-12	LisH

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27970 AT4G27970 AT4G27970 AT4G27970 AT4G27970 AT4G27970 AT5G24030 AT5G24030
fragaria_vesca	FvH4_7g30630 FvH4_7g30630 FvH4_7g30630 FvH4_7g30640 FvH4_7g30640 FvH4_7g30640 FvH4_7g30640
malus_domestica	MD01G1211400.v1.1 MD01G1211500.v1.1 MD07G1282100.v1.1
prunus_persica	Prupe.2G291700_v2.0.a1 Prupe.2G304200_v2.0.a1 Prupe.2G304300_v2.0.a1 Prupe.2G304300_v2.0.a1 Prupe.2G304300_v2.0.a1
pyrus_communis	pycom01g22190 pycom01g22200 pycom07g25600
rosa_chinensis	RchiOBHm_Chr1g0369441 RchiOBHm_Chr1g0379541 RchiOBHm_Chr1g0379571
rosa_laevigata	RLG00000026393 RLG00000026394 RLG00000027130
rosa_multiflora	Rmu_co8329679.1_g000001 Rmu_sc0000402.1_g000002 Rmu_sc0000402.1_g000005 Rmu_sc0001985.1_g000002 Rmu_sc0003612.1_g000018 Rmu_sc0024534.1_g000001
rosa_roxburghii	Rroxscaffold_4G00280080 Rroxscaffold_4G00280090 Rroxscaffold_4G00287650
rosa_rugosa	Rorug01G0350200 Rorug01G0350200 Rorug01G0413000
rosa_samantha	Rh1AG357900 Rh1AG435500 Rh1AG435600 Rh1BG322000 Rh1BG393100 Rh1BG393200 Rh1CG335700 Rh1CG405800 Rh1CG405900 Rh1DG352600 Rh1DG423900 Rh1DG424000
rosa_wichuraiana	Rw0G019950 Rw1G031570 Rw1G031580 Rw1G038040 Rw1G038050 Rw1G038070 Rw1G038080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	771
AccB7I	CCANNNNNTGG	1 cut(s)	741
AccIII	TCCGGA	1 cut(s)	664
AciI	CCGC	1 cut(s)	745
AclWI	GGATC	1 cut(s)	76
AcsI	RAATTY	1 cut(s)	433
AcuI	CTGAAG	2 cut(s)	328, 459
AcyI	GRCGYC	1 cut(s)	69
AfaI	GTAC	2 cut(s)	454, 574
AfiI	CCNNNNNNNGG	4 cut(s)	84, 560, 709, 741
AgsI	TTSAA	6 cut(s)	122, 337, 413, 424, 687, 707
AhdI	GACNNNNNGTC	1 cut(s)	781
AjnI	CCWGG	2 cut(s)	568, 740
AluBI	AGCT	6 cut(s)	94, 180, 202, 268, 683, 722
AluI	AGCT	6 cut(s)	94, 180, 202, 268, 683, 722
AlwI	GGATC	1 cut(s)	76
Ama87I	CYCGRG	2 cut(s)	56, 296
Aor13HI	TCCGGA	1 cut(s)	664
AoxI	GGCC	2 cut(s)	547, 566
ApeKI	GCWGC	3 cut(s)	180, 199, 265
ApoI	RAATTY	1 cut(s)	433
Asp700I	GAANNNNTTC	4 cut(s)	341, 523, 660, 702
AspLEI	GCGC	2 cut(s)	169, 265
AspS9I	GGNCC	4 cut(s)	28, 51, 389, 606
AsuC2I	CCSGG	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	148
AvaI	CYCGRG	2 cut(s)	56, 296
AvaII	GGWCC	4 cut(s)	28, 51, 389, 606
BarI	GAAGNNNNNNTAC	4 cut(s)	214, 246, 556, 588
BauI	CACGAG	1 cut(s)	13
BbsI	GAAGAC	1 cut(s)	526
BbvI	GCAGC	3 cut(s)	167, 211, 277
BccI	CCATC	2 cut(s)	19, 752
BceAI	ACGGC	1 cut(s)	249
BciT130I	CCWGG	2 cut(s)	570, 742
BcnI	CCSGG	1 cut(s)	86
BfaI	CTAG	2 cut(s)	447, 618
BfoI	RGCGCY	1 cut(s)	170
BfuAI	ACCTGC	1 cut(s)	771
BisI	GCNGC	4 cut(s)	181, 200, 266, 746
BlpI	GCTNAGC	2 cut(s)	90, 269
BlsI	GCNGC	4 cut(s)	182, 201, 267, 747
Bme1390I	CCNGG	3 cut(s)	86, 570, 742
Bme18I	GGWCC	4 cut(s)	28, 51, 389, 606
BmeRI	GACNNNNNGTC	1 cut(s)	781
BmeT110I	CYCGRG	2 cut(s)	56, 296
BmgT120I	GGNCC	4 cut(s)	28, 51, 389, 606
BmiI	GGNNCC	3 cut(s)	53, 391, 607
BmrFI	CCNGG	3 cut(s)	86, 570, 742
BmrI	ACTGGG	2 cut(s)	268, 577
BmuI	ACTGGG	2 cut(s)	268, 577
BoxI	GACNNNNGTC	1 cut(s)	41
BpiI	GAAGAC	1 cut(s)	526
BpmI	CTGGAG	1 cut(s)	564
Bpu1102I	GCTNAGC	2 cut(s)	90, 269
BpuEI	CTTGAG	1 cut(s)	17
BpuMI	CCSGG	1 cut(s)	86
BsaHI	GRCGYC	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	693
BsaWI	WCCGGW	1 cut(s)	664
Bsc4I	CCNNNNNNNGG	4 cut(s)	84, 560, 709, 741
Bse1I	ACTGG	3 cut(s)	263, 460, 583
BseAI	TCCGGA	1 cut(s)	664
BseBI	CCWGG	2 cut(s)	570, 742
BseDI	CCNNGG	1 cut(s)	693
BseGI	GGATG	2 cut(s)	409, 737
BseLI	CCNNNNNNNGG	4 cut(s)	84, 560, 709, 741
BseMII	CTCAG	4 cut(s)	81, 86, 321, 455
BseNI	ACTGG	3 cut(s)	263, 460, 583
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	3 cut(s)	167, 211, 277
Bsh1285I	CGRYCG	1 cut(s)	190
BshFI	GGCC	2 cut(s)	549, 568
BsiEI	CGRYCG	1 cut(s)	190
BsiHKCI	CYCGRG	2 cut(s)	56, 296
BsiSI	CCGG	4 cut(s)	85, 164, 665, 753
BslFI	GGGAC	1 cut(s)	375
BslI	CCNNNNNNNGG	4 cut(s)	84, 560, 709, 741
BsmFI	GGGAC	1 cut(s)	375
BsnI	GGCC	2 cut(s)	549, 568
BsoBI	CYCGRG	2 cut(s)	56, 296
Bsp13I	TCCGGA	1 cut(s)	664
Bsp143I	GATC	3 cut(s)	81, 187, 592
Bsp1720I	GCTNAGC	2 cut(s)	90, 269
Bsp19I	CCATGG	1 cut(s)	693
BspACI	CCGC	1 cut(s)	745
BspANI	GGCC	2 cut(s)	549, 568
BspCNI	CTCAG	4 cut(s)	82, 87, 322, 454
BspEI	TCCGGA	1 cut(s)	664
BspLI	GGNNCC	3 cut(s)	53, 391, 607
BspMI	ACCTGC	1 cut(s)	771
BspPI	GGATC	1 cut(s)	76
BsrI	ACTGG	3 cut(s)	263, 460, 583
BssECI	CCNNGG	1 cut(s)	693
BssMI	GATC	3 cut(s)	81, 187, 592
BssNI	GRCGYC	1 cut(s)	69
BssSI	CACGAG	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	693
Bst2BI	CACGAG	1 cut(s)	13
Bst2UI	CCWGG	2 cut(s)	570, 742
Bst6I	CTCTTC	2 cut(s)	117, 592
BstACI	GRCGYC	1 cut(s)	69
BstC8I	GCNNGC	2 cut(s)	158, 750
BstDEI	CTNAG	6 cut(s)	90, 95, 253, 269, 330, 441
BstDSI	CCRYGG	1 cut(s)	693
BstF5I	GGATG	2 cut(s)	409, 737
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	2 cut(s)	169, 265
BstKTI	GATC	3 cut(s)	84, 190, 595
BstMBI	GATC	3 cut(s)	81, 187, 592
BstMCI	CGRYCG	1 cut(s)	190
BstMWI	GCNNNNNNNGC	2 cut(s)	166, 689
BstNI	CCWGG	2 cut(s)	570, 742
BstNSI	RCATGY	1 cut(s)	517
BstPAI	GACNNNNGTC	1 cut(s)	41
BstSCI	CCNGG	3 cut(s)	84, 568, 740
BstV1I	GCAGC	3 cut(s)	167, 211, 277
BstV2I	GAAGAC	1 cut(s)	526
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
BsuRI	GGCC	2 cut(s)	549, 568
BtgI	CCRYGG	1 cut(s)	693
BtsCI	GGATG	2 cut(s)	409, 737
BveI	ACCTGC	1 cut(s)	771
Cac8I	GCNNGC	2 cut(s)	158, 750
CfoI	GCGC	2 cut(s)	169, 265
Cfr13I	GGNCC	4 cut(s)	28, 51, 389, 606
CseI	GACGC	1 cut(s)	58
Csp6I	GTAC	2 cut(s)	453, 573
CviAII	CATG	4 cut(s)	206, 514, 613, 694
CviQI	GTAC	2 cut(s)	453, 573
DdeI	CTNAG	6 cut(s)	90, 95, 253, 269, 330, 441
DpnI	GATC	3 cut(s)	83, 189, 594
DpnII	GATC	3 cut(s)	81, 187, 592
DriI	GACNNNNNGTC	1 cut(s)	781
Eam1104I	CTCTTC	2 cut(s)	117, 592
Eam1105I	GACNNNNNGTC	1 cut(s)	781
EarI	CTCTTC	2 cut(s)	117, 592
Eco130I	CCWWGG	1 cut(s)	693
Eco147I	AGGCCT	2 cut(s)	549, 568
Eco47I	GGWCC	4 cut(s)	28, 51, 389, 606
Eco57I	CTGAAG	2 cut(s)	328, 459
Eco88I	CYCGRG	2 cut(s)	56, 296
EcoO109I	RGGNCCY	1 cut(s)	606
EcoRII	CCWGG	2 cut(s)	568, 740
EcoT14I	CCWWGG	1 cut(s)	693
ErhI	CCWWGG	1 cut(s)	693
FaeI	CATG	4 cut(s)	209, 517, 616, 697
FaiI	YATR	6 cut(s)	207, 244, 363, 515, 614, 695
FalI	AAGNNNNNCTT	2 cut(s)	511, 543
FaqI	GGGAC	1 cut(s)	375
FatI	CATG	4 cut(s)	205, 513, 612, 693
Fnu4HI	GCNGC	4 cut(s)	181, 200, 266, 746
FokI	GGATG	2 cut(s)	416, 724
Fsp4HI	GCNGC	4 cut(s)	181, 200, 266, 746
FspBI	CTAG	2 cut(s)	447, 618
GlaI	GCGC	2 cut(s)	168, 264
GluI	GCNGC	4 cut(s)	181, 200, 266, 746
GsuI	CTGGAG	1 cut(s)	564
HaeII	RGCGCY	1 cut(s)	170
HaeIII	GGCC	2 cut(s)	549, 568
HapII	CCGG	4 cut(s)	85, 164, 665, 753
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	2 cut(s)	169, 265
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	4 cut(s)	209, 517, 616, 697
Hin6I	GCGC	2 cut(s)	167, 263
HinP1I	GCGC	2 cut(s)	167, 263
HinfI	GANTC	3 cut(s)	317, 485, 503
HpaII	CCGG	4 cut(s)	85, 164, 665, 753
HphI	GGTGA	1 cut(s)	148
Hpy188I	TCNGA	8 cut(s)	51, 331, 444, 478, 510, 592, 680, 787
Hpy188III	TCNNGA	4 cut(s)	34, 58, 219, 665
HpyCH4V	TGCA	2 cut(s)	183, 310
HpyF10VI	GCNNNNNNNGC	2 cut(s)	166, 689
HpyF3I	CTNAG	6 cut(s)	90, 95, 253, 269, 330, 441
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	4 cut(s)	209, 517, 616, 697
HspAI	GCGC	2 cut(s)	167, 263
Kpn2I	TCCGGA	1 cut(s)	664
Kzo9I	GATC	3 cut(s)	81, 187, 592
LmnI	GCTCC	1 cut(s)	207
Lsp1109I	GCAGC	3 cut(s)	167, 211, 277
MaeI	CTAG	2 cut(s)	447, 618
MaeIII	GTNAC	2 cut(s)	43, 347
MalI	GATC	3 cut(s)	83, 189, 594
MboI	GATC	3 cut(s)	81, 187, 592
MboII	GAAGA	7 cut(s)	73, 134, 519, 531, 609, 668, 680
MfeI	CAATTG	3 cut(s)	117, 640, 707
MflI	RGATCY	1 cut(s)	81
MluCI	AATT	6 cut(s)	117, 304, 433, 496, 640, 707
MlyI	GAGTC	2 cut(s)	494, 497
MroI	TCCGGA	1 cut(s)	664
MroXI	GAANNNNTTC	4 cut(s)	341, 523, 660, 702
MseI	TTAA	1 cut(s)	369
MslI	CAYNNNNRTG	1 cut(s)	241
MspI	CCGG	4 cut(s)	85, 164, 665, 753
MspR9I	CCNGG	3 cut(s)	86, 570, 742
MunI	CAATTG	3 cut(s)	117, 640, 707
MvaI	CCWGG	2 cut(s)	570, 742
MwoI	GCNNNNNNNGC	2 cut(s)	166, 689
NciI	CCSGG	1 cut(s)	86
NcoI	CCATGG	1 cut(s)	693
NdeII	GATC	3 cut(s)	81, 187, 592
NlaIII	CATG	4 cut(s)	209, 517, 616, 697
NlaIV	GGNNCC	3 cut(s)	53, 391, 607
NmuCI	GTSAC	1 cut(s)	43
NspI	RCATGY	1 cut(s)	517
PaeR7I	CTCGAG	1 cut(s)	56
PceI	AGGCCT	2 cut(s)	549, 568
PcsI	WCGNNNNNNNCGW	1 cut(s)	514
PdmI	GAANNNNTTC	4 cut(s)	341, 523, 660, 702
PfeI	GAWTC	1 cut(s)	317
PflMI	CCANNNNNTGG	1 cut(s)	741
PkrI	GCNGC	4 cut(s)	182, 201, 267, 747
Ple19I	CGATCG	1 cut(s)	190
PleI	GAGTC	2 cut(s)	493, 497
PpsI	GAGTC	2 cut(s)	493, 497
PpuMI	RGGWCCY	1 cut(s)	606
PshAI	GACNNNNGTC	1 cut(s)	41
Psp5II	RGGWCCY	1 cut(s)	606
Psp6I	CCWGG	2 cut(s)	568, 740
PspGI	CCWGG	2 cut(s)	568, 740
PspN4I	GGNNCC	3 cut(s)	53, 391, 607
PspPI	GGNCC	4 cut(s)	28, 51, 389, 606
PspPPI	RGGWCCY	1 cut(s)	606
PsuI	RGATCY	1 cut(s)	81
PvuI	CGATCG	1 cut(s)	190
RsaI	GTAC	2 cut(s)	454, 574
RsaNI	GTAC	2 cut(s)	453, 573
RseI	CAYNNNNRTG	1 cut(s)	241
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	4 cut(s)	181, 200, 266, 746
Sau3AI	GATC	3 cut(s)	81, 187, 592
Sau96I	GGNCC	4 cut(s)	28, 51, 389, 606
SchI	GAGTC	2 cut(s)	494, 497
ScrFI	CCNGG	3 cut(s)	86, 570, 742
Sfr274I	CTCGAG	1 cut(s)	56
SinI	GGWCC	4 cut(s)	28, 51, 389, 606
SlaI	CTCGAG	1 cut(s)	56
SmiMI	CAYNNNNRTG	1 cut(s)	241
SmlI	CTYRAG	2 cut(s)	32, 56
SmoI	CTYRAG	2 cut(s)	32, 56
Sse9I	AATT	6 cut(s)	117, 304, 433, 496, 640, 707
SseBI	AGGCCT	2 cut(s)	549, 568
SsiI	CCGC	1 cut(s)	745
SspMI	CTAG	2 cut(s)	447, 618
StuI	AGGCCT	2 cut(s)	549, 568
StyD4I	CCNGG	3 cut(s)	84, 568, 740
StyI	CCWWGG	1 cut(s)	693
TaqI	TCGA	4 cut(s)	57, 111, 595, 724
TasI	AATT	6 cut(s)	117, 304, 433, 496, 640, 707
TauI	GCSGC	1 cut(s)	748
TfiI	GAWTC	1 cut(s)	317
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	3 cut(s)	180, 199, 265
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	2 cut(s)	519, 669
Van91I	CCANNNNNTGG	1 cut(s)	741
VpaK11BI	GGWCC	4 cut(s)	28, 51, 389, 606
XapI	RAATTY	1 cut(s)	433
XceI	RCATGY	1 cut(s)	517
XhoI	CTCGAG	1 cut(s)	56
XmnI	GAANNNNTTC	4 cut(s)	341, 523, 660, 702
XspI	CTAG	2 cut(s)	447, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.