RLG00000026394

S-type anion channel

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
2744918 .. 2747288
2371 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026394

Sequence Viewer

Length: 1758 bp
ATGTTTTGCCTTCAAATTCCATCTCCTATCAAATATATATCATCAAATGAAGTGGTTCGGTTTGATAACGTTGAGGAGCATACCTTTTTCAATGATAAGCATCGGCTAACTGACCCATCAGCTAAGAAAAATGAGATAGCTGCTATGCTATCTCTTAGCATGCCACCATCACCAATGGAAATTCAGTTACAGAACACAAAAGAAGTCCCCTTCAGTCCTGAAACAAATTTCAAAAATGGAATTCCCGATTCTAATTTTGCTGCAACTAAGGGTGCTAGTAGCAGCCAACTACCGGAAGAAGCAGAATTTCACTCTCAGGCCCAGTCAAAAAGCTCTGCATTTGAAGATCAGGCAATTCAAATAGGACATTTTCCTTATCAACCAAGTATTGAAAGCTTGAAAGATAAGAGGTTTGATAATTTCAAGACATGGTCTGGGAAACTTGAAAGGCAGATATCACTAGCTTCACTACTACGGGGAAGGCCACCGCGAAAAAGTGATCAACCAGAGAATGCTTCTGTGCAAAGTACAGATCAAGTTGACCCTTTACCTGCAGACAGATACTTTGATGCATTGGAAGGGCCTGAGTTGGACACCCTTAGGGCTTCAGAGGAAATTCTGCTTCCAGAAGATAAGAAATGGCCATTTCTTCTCCGGTATCCCATTTCTTCATTTAGCATCTGTCTTGGTGTTAGCAGCCAAGCTATTTTGTGGAAAACCCTGCCTATCTCTACCTCCACAAAATTTCTCCACTTGAGCTTAACACCAAATTTGGTTCTGTGGTTCATTTCTCTTGCTCTATTAGTTATTGTTGCTTGCATCTACATTCTTAAAATCATCTTCTACTTTGAAGCAGTTCGTCGTGAGTATTACCATCCAATCCGAATCAACTTCTTCTTTTCCCCATTTGTAGCCCTCTTGTTCACAGCTCTTGGAGTCCCACCTTCAATTTCTAACAACCTCCATCCAGCTCTTTGGTACATCCTCATGGCACCAATTCTATGTCTTGAACTTAAAATCTATGGGCAGTGGATGTCAGGAGGCGAACGCCGGCTCTCAAAGGTGGCGAATCCTGTCAACCATCTCTCCATTGTTGGCAACTTTGTTGGGGCATTGCTAGGAGCATCAATGGGACTAAAAGAAGGACCAATATTCTTTTTTGCTGTTGGGTTGGCTCACTACACGGTCTTATTTGTAACTTTGTACCAGAGACTTCCAACAAATGAGTCAGTAATCCCAAAGGAACTCCATCCTGTGTTCTTTCTGTTTGTTGCAGCACCTAGCGTAGCTTCAATGGCATGGGCAAGAATCCAAGGCTCCTTTGGTTATGGCTCGCGGATAAGTTATTTCATAGCCATGTTCCTTTATCTCTCATTGGTAGTCCGAGTCAATTTTTTCCGAGGATTCAAGTTCTCATTGGCATGGTGGGCATACACTTTCCCAATGACCGGTGCTGCCATTGCAACCATCAGGTACTCGAATGAAGTGACGAATGTAGCAACTCAAGCTTTGGCTGTCATACTCTCTCTCATTGCCACATTCACAGTCATGGCTCTCTTCGTAGTAACCCTATTGCATGCCTTTGTGCTCCGAGACCTCTTCCCCAATGACATTCCAATTGCCATTAGTGACAGAAACCCAAATAAACCACACAAAAAGTGGTTCCATTTAAAGCAGGAAAGCTCTTCGTATCCCAAAGATATTGAGAATTCCTTGAAGTCAACAACAGGCTCAGAGAAAAAGGGTTTGGAAATTTGA

Protein Analysis

586

Amino Acids

65.9

Weight (kDa)

8.75

Isoelectric Point (pI)

41.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SLAC1 PF03595 220 - 524 5e-45 Voltage-dependent anion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 559
AccB1I GGYRCC 1 cut(s) 991
AccII CGCG 2 cut(s) 490, 1336
AciI CCGC 2 cut(s) 488, 1336
AclI AACGTT 1 cut(s) 69
AcoI YGGCCR 1 cut(s) 641
AcuI CTGAAG 2 cut(s) 196, 591
AfaI GTAC 4 cut(s) 529, 980, 1205, 1475
AfiI CCNNNNNNNGG 2 cut(s) 292, 1448
AgeI ACCGGT 1 cut(s) 1448
AjuI GAANNNNNNNTTGG 1 cut(s) 1730
Alw21I GWGCWC 1 cut(s) 1590
Alw26I GTCTC 2 cut(s) 1204, 1587
AoxI GGCC 4 cut(s) 318, 482, 581, 641
ApeKI GCWGC 6 cut(s) 140, 260, 282, 696, 1274, 1454
ArsI GACNNNNNNTTYG 2 cut(s) 548, 580
AsiGI ACCGGT 1 cut(s) 1448
Asp700I GAANNNNTTC 2 cut(s) 54, 855
AspS9I GGNCC 3 cut(s) 319, 581, 1145
AsuHPI GGTGA 1 cut(s) 162
AvaII GGWCC 1 cut(s) 1145
AxyI CCTNAGG 1 cut(s) 599
BalI TGGCCA 1 cut(s) 643
BanI GGYRCC 1 cut(s) 991
Bbv12I GWGCWC 1 cut(s) 1590
BbvI GCAGC 6 cut(s) 127, 247, 294, 708, 1286, 1441
BccI CCATC 8 cut(s) 28, 124, 175, 882, 972, 1089, 1257, 1475
BciVI GTATCC 2 cut(s) 669, 1701
BclI TGATCA 1 cut(s) 499
BcoDI GTCTC 2 cut(s) 1204, 1587
BfaI CTAG 4 cut(s) 276, 461, 1118, 1281
BfmI CTRYAG 1 cut(s) 552
BfuAI ACCTGC 1 cut(s) 559
BfuI GTATCC 2 cut(s) 669, 1701
BisI GCNGC 6 cut(s) 141, 261, 283, 697, 1275, 1455
BlsI GCNGC 6 cut(s) 142, 262, 284, 698, 1276, 1456
Bme18I GGWCC 1 cut(s) 1145
BmgT120I GGNCC 3 cut(s) 319, 581, 1145
BmiI GGNNCC 3 cut(s) 993, 1318, 1664
BmrI ACTGGG 1 cut(s) 316
BmsI GCATC 5 cut(s) 109, 559, 687, 828, 1133
BmuI ACTGGG 1 cut(s) 316
BpuEI CTTGAG 2 cut(s) 775, 1488
BsaBI GATNNNNATC 1 cut(s) 99
BsaI GGTCTC 1 cut(s) 1587
BsaJI CCNNGG 2 cut(s) 1312, 1399
BsaWI WCCGGW 3 cut(s) 292, 654, 1448
BsaXI ACNNNNNCTCC 2 cut(s) 1070, 1100
Bsc4I CCNNNNNNNGG 2 cut(s) 292, 1448
Bse118I RCCGGY 2 cut(s) 1050, 1448
Bse1I ACTGG 1 cut(s) 322
Bse21I CCTNAGG 1 cut(s) 599
Bse3DI GCAATG 3 cut(s) 1112, 1458, 1530
Bse8I GATNNNNATC 1 cut(s) 99
BseDI CCNNGG 2 cut(s) 1312, 1399
BseGI GGATG 5 cut(s) 874, 964, 981, 1038, 1249
BseJI GATNNNNATC 1 cut(s) 99
BseLI CCNNNNNNNGG 2 cut(s) 292, 1448
BseMI GCAATG 3 cut(s) 1112, 1458, 1530
BseMII CTCAG 3 cut(s) 329, 576, 1746
BseNI ACTGG 1 cut(s) 322
BseRI GAGGAG 1 cut(s) 89
BseXI GCAGC 6 cut(s) 127, 247, 294, 708, 1286, 1441
Bsh1236I CGCG 2 cut(s) 490, 1336
BshFI GGCC 4 cut(s) 320, 484, 583, 643
BshNI GGYRCC 1 cut(s) 991
BshTI ACCGGT 1 cut(s) 1448
BsiHKAI GWGCWC 1 cut(s) 1590
BsiSI CCGG 4 cut(s) 293, 655, 1051, 1449
BslFI GGGAC 3 cut(s) 191, 923, 1146
BslI CCNNNNNNNGG 2 cut(s) 292, 1448
BsmAI GTCTC 2 cut(s) 1204, 1587
BsmFI GGGAC 3 cut(s) 191, 923, 1146
BsmI GAATGC 1 cut(s) 517
BsnI GGCC 4 cut(s) 320, 484, 583, 643
Bso31I GGTCTC 1 cut(s) 1587
Bsp1286I GDGCHC 1 cut(s) 1590
Bsp143I GATC 3 cut(s) 346, 499, 532
BspACI CCGC 2 cut(s) 488, 1336
BspANI GGCC 4 cut(s) 320, 484, 583, 643
BspCNI CTCAG 3 cut(s) 328, 577, 1745
BspFNI CGCG 2 cut(s) 490, 1336
BspLI GGNNCC 3 cut(s) 993, 1318, 1664
BspMAI CTGCAG 1 cut(s) 556
BspMI ACCTGC 1 cut(s) 559
BspQI GCTCTTC 1 cut(s) 1690
BspT107I GGYRCC 1 cut(s) 991
BspTNI GGTCTC 1 cut(s) 1587
BsrDI GCAATG 3 cut(s) 1112, 1458, 1530
BsrFI RCCGGY 2 cut(s) 1050, 1448
BsrI ACTGG 1 cut(s) 322
BssAI RCCGGY 2 cut(s) 1050, 1448
BssECI CCNNGG 2 cut(s) 1312, 1399
BssMI GATC 3 cut(s) 346, 499, 532
BssT1I CCWWGG 1 cut(s) 1312
Bst4CI ACNGT 2 cut(s) 1186, 1546
Bst6I CTCTTC 3 cut(s) 1562, 1604, 1690
BstC8I GCNNGC 5 cut(s) 161, 817, 1052, 1334, 1578
BstDEI CTNAG 7 cut(s) 123, 155, 267, 315, 585, 599, 1732
BstF5I GGATG 5 cut(s) 874, 964, 981, 1038, 1249
BstFNI CGCG 2 cut(s) 490, 1336
BstKTI GATC 3 cut(s) 349, 502, 535
BstMAI GTCTC 2 cut(s) 1204, 1587
BstMBI GATC 3 cut(s) 346, 499, 532
BstMWI GCNNNNNNNGC 4 cut(s) 1295, 1427, 1460, 1505
BstNSI RCATGY 2 cut(s) 163, 1580
BstSFI CTRYAG 1 cut(s) 552
BstUI CGCG 2 cut(s) 490, 1336
BstV1I GCAGC 6 cut(s) 127, 247, 294, 708, 1286, 1441
BstXI CCANNNNNNTGG 1 cut(s) 975
Bsu36I CCTNAGG 1 cut(s) 599
BsuI GTATCC 2 cut(s) 669, 1701
BsuRI GGCC 4 cut(s) 320, 484, 583, 643
BtsCI GGATG 5 cut(s) 874, 964, 981, 1038, 1249
BtsI GCAGTG 1 cut(s) 1034
BtsIMutI CAGTG 1 cut(s) 1034
BveI ACCTGC 1 cut(s) 559
Cac8I GCNNGC 5 cut(s) 161, 817, 1052, 1334, 1578
Cfr10I RCCGGY 2 cut(s) 1050, 1448
Cfr13I GGNCC 3 cut(s) 319, 581, 1145
Csp6I GTAC 4 cut(s) 528, 979, 1204, 1474
CspAI ACCGGT 1 cut(s) 1448
CspCI CAANNNNNGTGG 2 cut(s) 33, 68
CviAII CATG 8 cut(s) 160, 429, 988, 1299, 1357, 1422, 1549, 1577
CviQI GTAC 4 cut(s) 528, 979, 1204, 1474
DdeI CTNAG 7 cut(s) 123, 155, 267, 315, 585, 599, 1732
DpnI GATC 3 cut(s) 348, 501, 534
DpnII GATC 3 cut(s) 346, 499, 532
DraI TTTAAA 1 cut(s) 1671
EaeI YGGCCR 1 cut(s) 641
Eam1104I CTCTTC 3 cut(s) 1562, 1604, 1690
EarI CTCTTC 3 cut(s) 1562, 1604, 1690
Eco130I CCWWGG 1 cut(s) 1312
Eco31I GGTCTC 1 cut(s) 1587
Eco32I GATATC 1 cut(s) 456
Eco47I GGWCC 1 cut(s) 1145
Eco57I CTGAAG 2 cut(s) 196, 591
Eco81I CCTNAGG 1 cut(s) 599
EcoO109I RGGNCCY 1 cut(s) 581
EcoRI GAATTC 2 cut(s) 240, 1708
EcoRV GATATC 1 cut(s) 456
EcoT14I CCWWGG 1 cut(s) 1312
EcoT22I ATGCAT 1 cut(s) 574
ErhI CCWWGG 1 cut(s) 1312
FaeI CATG 8 cut(s) 163, 432, 991, 1302, 1360, 1425, 1552, 1580
FaqI GGGAC 3 cut(s) 191, 923, 1146
FatI CATG 8 cut(s) 159, 428, 987, 1298, 1356, 1421, 1548, 1576
FbaI TGATCA 1 cut(s) 499
Fnu4HI GCNGC 6 cut(s) 141, 261, 283, 697, 1275, 1455
FokI GGATG 5 cut(s) 861, 951, 968, 1045, 1236
Fsp4HI GCNGC 6 cut(s) 141, 261, 283, 697, 1275, 1455
FspBI CTAG 4 cut(s) 276, 461, 1118, 1281
GluI GCNGC 6 cut(s) 141, 261, 283, 697, 1275, 1455
HaeIII GGCC 4 cut(s) 320, 484, 583, 643
HapII CCGG 4 cut(s) 293, 655, 1051, 1449
Hin1II CATG 8 cut(s) 163, 432, 991, 1302, 1360, 1425, 1552, 1580
HincII GTYRAC 3 cut(s) 541, 1078, 1722
HindII GTYRAC 3 cut(s) 541, 1078, 1722
HindIII AAGCTT 2 cut(s) 394, 1506
HinfI GANTC 8 cut(s) 248, 885, 936, 1069, 1226, 1308, 1386, 1404
HpaII CCGG 4 cut(s) 293, 655, 1051, 1449
HphI GGTGA 1 cut(s) 162
Hpy166II GTNNAC 4 cut(s) 541, 924, 1078, 1722
Hpy188I TCNGA 6 cut(s) 610, 884, 1385, 1400, 1592, 1735
Hpy188III TCNNGA 7 cut(s) 218, 245, 424, 626, 863, 1007, 1038
Hpy8I GTNNAC 4 cut(s) 541, 924, 1078, 1722
Hpy99I CGWCG 1 cut(s) 864
HpyAV CCTTC 6 cut(s) 20, 220, 474, 572, 954, 1136
HpyCH4III ACNGT 2 cut(s) 1186, 1546
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 9 cut(s) 263, 338, 523, 554, 572, 819, 1274, 1463, 1576
HpyF10VI GCNNNNNNNGC 4 cut(s) 1295, 1427, 1460, 1505
HpyF3I CTNAG 7 cut(s) 123, 155, 267, 315, 585, 599, 1732
HpySE526I ACGT 1 cut(s) 69
Hsp92II CATG 8 cut(s) 163, 432, 991, 1302, 1360, 1425, 1552, 1580
KroI GCCGGC 1 cut(s) 1050
KroNI GCCGGC 1 cut(s) 1052
Ksp22I TGATCA 1 cut(s) 499
Kzo9I GATC 3 cut(s) 346, 499, 532
LguI GCTCTTC 1 cut(s) 1690
LmnI GCTCC 4 cut(s) 76, 1121, 1322, 1593
Lsp1109I GCAGC 6 cut(s) 127, 247, 294, 708, 1286, 1441
LweI GCATC 5 cut(s) 109, 559, 687, 828, 1133
MaeI CTAG 4 cut(s) 276, 461, 1118, 1281
MaeII ACGT 1 cut(s) 69
MaeIII GTNAC 5 cut(s) 186, 1195, 1486, 1564, 1628
MalI GATC 3 cut(s) 348, 501, 534
MboI GATC 3 cut(s) 346, 499, 532
MfeI CAATTG 1 cut(s) 1617
MhlI GDGCHC 1 cut(s) 1590
MlsI TGGCCA 1 cut(s) 643
MluNI TGGCCA 1 cut(s) 643
MlyI GAGTC 3 cut(s) 945, 1235, 1395
MmeI TCCRAC 2 cut(s) 570, 1241
Mox20I TGGCCA 1 cut(s) 643
Mph1103I ATGCAT 1 cut(s) 574
MroNI GCCGGC 1 cut(s) 1050
MroXI GAANNNNTTC 2 cut(s) 54, 855
MscI TGGCCA 1 cut(s) 643
MseI TTAA 4 cut(s) 761, 831, 1014, 1670
MslI CAYNNNNRTG 4 cut(s) 986, 1355, 1420, 1547
Msp20I TGGCCA 1 cut(s) 643
MspI CCGG 4 cut(s) 293, 655, 1051, 1449
MunI CAATTG 1 cut(s) 1617
Mva1269I GAATGC 1 cut(s) 517
MvnI CGCG 2 cut(s) 490, 1336
MwoI GCNNNNNNNGC 4 cut(s) 1295, 1427, 1460, 1505
NaeI GCCGGC 1 cut(s) 1052
NdeII GATC 3 cut(s) 346, 499, 532
NgoMIV GCCGGC 1 cut(s) 1050
NlaIII CATG 8 cut(s) 163, 432, 991, 1302, 1360, 1425, 1552, 1580
NlaIV GGNNCC 3 cut(s) 993, 1318, 1664
NmuCI GTSAC 2 cut(s) 1486, 1628
NsiI ATGCAT 1 cut(s) 574
NspI RCATGY 2 cut(s) 163, 1580
PaeI GCATGC 2 cut(s) 163, 1580
PciSI GCTCTTC 1 cut(s) 1690
PctI GAATGC 1 cut(s) 517
PdiI GCCGGC 1 cut(s) 1052
PdmI GAANNNNTTC 2 cut(s) 54, 855
PfeI GAWTC 5 cut(s) 248, 885, 1069, 1308, 1404
PflFI GACNNNGTC 1 cut(s) 430
PinAI ACCGGT 1 cut(s) 1448
PkrI GCNGC 6 cut(s) 142, 262, 284, 698, 1276, 1456
PleI GAGTC 3 cut(s) 944, 1234, 1394
PpsI GAGTC 3 cut(s) 944, 1234, 1394
Psp1406I AACGTT 1 cut(s) 69
PspN4I GGNNCC 3 cut(s) 993, 1318, 1664
PspPI GGNCC 3 cut(s) 319, 581, 1145
PstI CTGCAG 1 cut(s) 556
PsyI GACNNNGTC 1 cut(s) 430
RsaI GTAC 4 cut(s) 529, 980, 1205, 1475
RsaNI GTAC 4 cut(s) 528, 979, 1204, 1474
RseI CAYNNNNRTG 4 cut(s) 986, 1355, 1420, 1547
SapI GCTCTTC 1 cut(s) 1690
SaqAI TTAA 4 cut(s) 761, 831, 1014, 1670
SatI GCNGC 6 cut(s) 141, 261, 283, 697, 1275, 1455
Sau3AI GATC 3 cut(s) 346, 499, 532
Sau96I GGNCC 3 cut(s) 319, 581, 1145
SchI GAGTC 3 cut(s) 945, 1235, 1395
SduI GDGCHC 1 cut(s) 1590
SfaNI GCATC 5 cut(s) 109, 559, 687, 828, 1133
SfcI CTRYAG 1 cut(s) 552
SinI GGWCC 1 cut(s) 1145
SmiMI CAYNNNNRTG 4 cut(s) 986, 1355, 1420, 1547
SmlI CTYRAG 2 cut(s) 754, 1503
SmoI CTYRAG 2 cut(s) 754, 1503
SphI GCATGC 2 cut(s) 163, 1580
SsiI CCGC 2 cut(s) 488, 1336
SspI AATATT 1 cut(s) 1152
SspMI CTAG 4 cut(s) 276, 461, 1118, 1281
StyI CCWWGG 1 cut(s) 1312
TaaI ACNGT 2 cut(s) 1186, 1546
TaiI ACGT 1 cut(s) 72
TaqI TCGA 1 cut(s) 1478
TatI WGTACW 1 cut(s) 527
TfiI GAWTC 5 cut(s) 248, 885, 1069, 1308, 1404
Tru1I TTAA 4 cut(s) 761, 831, 1014, 1670
Tru9I TTAA 4 cut(s) 761, 831, 1014, 1670
TscAI CASTG 1 cut(s) 1034
TseFI GTSAC 2 cut(s) 1486, 1628
TseI GCWGC 6 cut(s) 140, 260, 282, 696, 1274, 1454
Tsp45I GTSAC 2 cut(s) 1486, 1628
TspDTI ATGAA 5 cut(s) 63, 660, 775, 1339, 1497
TspRI CASTG 1 cut(s) 1034
Tth111I GACNNNGTC 1 cut(s) 430
VpaK11BI GGWCC 1 cut(s) 1145
XceI RCATGY 2 cut(s) 163, 1580
XcmI CCANNNNNNNNNTGG 2 cut(s) 1319, 1656
XmnI GAANNNNTTC 2 cut(s) 54, 855
XspI CTAG 4 cut(s) 276, 461, 1118, 1281
Zsp2I ATGCAT 1 cut(s) 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.