FvH4_7g30630

S-type anion channel

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
22267774 .. 22271552
3779 bp
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UTR
Exon/CDS
Intron
FvH4_7g30630.t3

Sequence Viewer

Length: 1758 bp
ATGGGGTCTGAGGAACATGTTTCCCTTCGAATTCCATCTCCTATCAAATACATATCACCAACTGAAGTGGTTCAGCTTGATAATGTTGAGGAGCGTACCTTATTCAATGACAAGCATCAGCTAACTGACCCATCAGCTAAGAAATCTGAGATATCTCTTAGCATGTCACCATCACCAATGGAAGTTCAGATACAGAATACAGAAGAAGTCCCCTTCTGTCCCGAAACAGAGTTCAACAATGGAATGTCAGATACTAATTCTGCCCCAACTAAGCGTGCTAGTAGCAGCCAACTACAGGAAGAAGCAGAGTTTCACTCTCAACCCCAGCCAAAAACCTCTGCATTTGAAGAGCAGGCCATTCAAATTGGACATTTTCCTTATCAACCAAGTATTGAAAGGCTGAAAGACAAGAGGTTTGATAATTTCAAGACGTGGTCCGGGAAACTTGAAAGGCAGATATCACTAGCTTCACTACTACGGGGAAAGCCACTGGGAAAAATTGATCAACCAGACAATGCTTTTGTGCAGAGTACAGATCAAGTTGACCCTTTACCTGCAGACAGATACTTCGATGCATTGGAAGGGCCTGAGTTGGACACGCTTAGGGCTTCAGAGGAAATTCTGCTTCCAGAAGATAAGAAATGGCCATTTCTTCTCCGGTATCACATTTCTTCATTTAGCATCTGTCTTGGTGTTAGCAGCCAAGCTATTCTGTGGAAAATCTTGCCTACCTCTGCCTCTACCAAATTTCTCCACTTGAGTTTAATGCCAAATCTGGTTCTGTGGTTCATTTCTCTTGCTCTATTAGTCATTGTTGCTAGCATCTACATTCTTAAAATCATCTTCTACTTTGAAGCAGTTCGTCGTGAGTATTACCATCCAATCCGAATCAACTTCTTTTTTTCACCGTTTATAACCCTCTTGTTCATAGCTCTTGGTGTCCCACCTTCAATCTGTAAAAACCTCAATCCAGCTCTTTGGTACATCCTAATGGCACCAATACTATGTCTTGAGCTTAAGATCTACGGACAGTGGATGTCAGGCGGACAACGTCGGCTTTCTAAAGTAGCCAATCCTGTTAACCATCTATCCATTGTTGGGAACTTTGTTGGGGCATTGCTAGGAGCATCAATGGGACTGAAAGAAGGACCAATATTCTTCTTCGCTGTTGGGGTGGCTCACTATATGGTCTTGTTTGTAACATTGTACCAGAGACTTCCAACAAATGAGTCAGTAATCCCAAAGGAACTCCATCCTGTGTTCTTTCTGTTTGTTGCAGCACCTAGCGTAGCTTCGATGGCATGGGCAAGAATCCAAGGCTCCTTTGATTATGGCTCGCGGATTGGCTACTTCATCGCCATGTTCCTTTATCTCTCATTGGTCGTCAGAGTCAATTTTTTCCGAGGATTCAAGTTCTCATTGGCATGGTGGGCATACACTTTCCCAATGACGGGTGCTGCCACTGCAAGCATCAGGTACTCGAATGAAGTGACGAATGTAGCAACTCAAGCTTTGGCTCTCATACTCTCTCTCATTGCCACATTCACAGTGCTTGGTCTCTTCGTGGTAACCCTTTTGCATGCCTTTGTTCTCCGAGACCTCTTCCCCAATGACATTGCAATTGCCATTAGTGATAGAAACCCAAGTAAACTGAACAGCAAGTGGCACCATCTCAAGCAGGACAGCTCTTATTGTCCCAAAGACATTGAGAATTCCTTGCAATCAACAATAAGCATAGATAAAAAGGGAAAAATTTGA

Protein Analysis

586

Amino Acids

66.0

Weight (kDa)

7.68

Isoelectric Point (pI)

46.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SLAC1 PF03595 221 - 460 1.4e-32 Voltage-dependent anion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 914
Acc36I ACCTGC 1 cut(s) 562
AccB1I GGYRCC 2 cut(s) 994, 1665
AccII CGCG 1 cut(s) 1339
AciI CCGC 2 cut(s) 1044, 1339
AcoI YGGCCR 1 cut(s) 644
AcsI RAATTY 5 cut(s) 30, 618, 746, 1711, 1752
AcuI CTGAAG 2 cut(s) 84, 594
AfaI GTAC 5 cut(s) 97, 532, 983, 1208, 1478
AfiI CCNNNNNNNGG 4 cut(s) 295, 1098, 1450, 1451
AflII CTTAAG 1 cut(s) 1016
AflIII ACRYGT 1 cut(s) 16
AjiI CACGTC 1 cut(s) 432
Alw26I GTCTC 3 cut(s) 1207, 1562, 1590
AoxI GGCC 3 cut(s) 354, 584, 644
ApeKI GCWGC 4 cut(s) 285, 699, 1277, 1457
ApoI RAATTY 5 cut(s) 30, 618, 746, 1711, 1752
ArsI GACNNNNNNTTYG 6 cut(s) 398, 430, 503, 535, 551, 583
Asp700I GAANNNNTTC 2 cut(s) 69, 858
AspS9I GGNCC 3 cut(s) 435, 584, 1148
AsuC2I CCSGG 1 cut(s) 439
AsuHPI GGTGA 4 cut(s) 48, 159, 165, 897
AsuII TTCGAA 1 cut(s) 28
AsuNHI GCTAGC 1 cut(s) 818
AvaII GGWCC 2 cut(s) 435, 1148
BalI TGGCCA 1 cut(s) 646
BanI GGYRCC 2 cut(s) 994, 1665
BarI GAAGNNNNNNTAC 2 cut(s) 174, 206
BbvI GCAGC 4 cut(s) 297, 711, 1289, 1444
BccI CCATC 8 cut(s) 43, 139, 178, 885, 1092, 1260, 1291, 1677
BclI TGATCA 1 cut(s) 502
BcnI CCSGG 1 cut(s) 439
BcoDI GTCTC 3 cut(s) 1207, 1562, 1590
BfaI CTAG 5 cut(s) 279, 464, 819, 1121, 1284
BfmI CTRYAG 2 cut(s) 293, 555
BfrI CTTAAG 1 cut(s) 1016
BfuAI ACCTGC 1 cut(s) 562
BglII AGATCT 1 cut(s) 1020
BisI GCNGC 4 cut(s) 286, 700, 1278, 1458
BlsI GCNGC 4 cut(s) 287, 701, 1279, 1459
Bme1390I CCNGG 1 cut(s) 439
Bme18I GGWCC 2 cut(s) 435, 1148
BmgBI CACGTC 1 cut(s) 432
BmgT120I GGNCC 3 cut(s) 435, 584, 1148
BmiI GGNNCC 3 cut(s) 996, 1321, 1667
BmrFI CCNGG 1 cut(s) 439
BmrI ACTGGG 1 cut(s) 500
BmsI GCATC 6 cut(s) 124, 562, 690, 831, 1136, 1479
BmtI GCTAGC 1 cut(s) 822
BmuI ACTGGG 1 cut(s) 500
BplI GAGNNNNNCTC 2 cut(s) 299, 331
Bpu10I CCTNAGC 1 cut(s) 602
Bpu14I TTCGAA 1 cut(s) 28
BpuEI CTTGAG 4 cut(s) 778, 1031, 1491, 1658
BpuMI CCSGG 1 cut(s) 439
BsaI GGTCTC 2 cut(s) 1562, 1590
BsaJI CCNNGG 2 cut(s) 1315, 1402
BsaWI WCCGGW 1 cut(s) 657
Bsc4I CCNNNNNNNGG 4 cut(s) 295, 1098, 1450, 1451
Bse1I ACTGG 1 cut(s) 495
Bse3DI GCAATG 3 cut(s) 1115, 1533, 1614
BseDI CCNNGG 2 cut(s) 1315, 1402
BseGI GGATG 4 cut(s) 877, 984, 1041, 1252
BseLI CCNNNNNNNGG 4 cut(s) 295, 1098, 1450, 1451
BseMI GCAATG 3 cut(s) 1115, 1533, 1614
BseMII CTCAG 2 cut(s) 138, 579
BseNI ACTGG 1 cut(s) 495
BseRI GAGGAG 1 cut(s) 104
BseXI GCAGC 4 cut(s) 297, 711, 1289, 1444
BseYI CCCAGC 1 cut(s) 324
BsgI GTGCAG 1 cut(s) 545
Bsh1236I CGCG 1 cut(s) 1339
BshFI GGCC 3 cut(s) 356, 586, 646
BshNI GGYRCC 2 cut(s) 994, 1665
BsiSI CCGG 2 cut(s) 438, 658
BslFI GGGAC 5 cut(s) 194, 204, 926, 1149, 1680
BslI CCNNNNNNNGG 4 cut(s) 295, 1098, 1450, 1451
BsmAI GTCTC 3 cut(s) 1207, 1562, 1590
BsmFI GGGAC 5 cut(s) 194, 204, 926, 1149, 1680
BsnI GGCC 3 cut(s) 356, 586, 646
Bso31I GGTCTC 2 cut(s) 1562, 1590
Bsp119I TTCGAA 1 cut(s) 28
Bsp143I GATC 3 cut(s) 502, 535, 1020
BspACI CCGC 2 cut(s) 1044, 1339
BspANI GGCC 3 cut(s) 356, 586, 646
BspCNI CTCAG 2 cut(s) 139, 580
BspFNI CGCG 1 cut(s) 1339
BspLI GGNNCC 3 cut(s) 996, 1321, 1667
BspMAI CTGCAG 1 cut(s) 559
BspMI ACCTGC 1 cut(s) 562
BspOI GCTAGC 1 cut(s) 822
BspQI GCTCTTC 1 cut(s) 342
BspT104I TTCGAA 1 cut(s) 28
BspT107I GGYRCC 2 cut(s) 994, 1665
BspTI CTTAAG 1 cut(s) 1016
BspTNI GGTCTC 2 cut(s) 1562, 1590
BsrDI GCAATG 3 cut(s) 1115, 1533, 1614
BsrI ACTGG 1 cut(s) 495
BssECI CCNNGG 2 cut(s) 1315, 1402
BssMI GATC 3 cut(s) 502, 535, 1020
BssT1I CCWWGG 1 cut(s) 1315
Bst4CI ACNGT 3 cut(s) 909, 1032, 1549
Bst6I CTCTTC 3 cut(s) 342, 1565, 1607
BstAFI CTTAAG 1 cut(s) 1016
BstBI TTCGAA 1 cut(s) 28
BstC8I GCNNGC 6 cut(s) 276, 354, 820, 1337, 1468, 1581
BstDEI CTNAG 7 cut(s) 9, 138, 147, 158, 270, 588, 602
BstEII GGTNACC 1 cut(s) 1567
BstF5I GGATG 4 cut(s) 877, 984, 1041, 1252
BstFNI CGCG 1 cut(s) 1339
BstKTI GATC 3 cut(s) 505, 538, 1023
BstMAI GTCTC 3 cut(s) 1207, 1562, 1590
BstMBI GATC 3 cut(s) 502, 535, 1020
BstMWI GCNNNNNNNGC 4 cut(s) 1298, 1430, 1463, 1508
BstNSI RCATGY 3 cut(s) 20, 166, 1583
BstPI GGTNACC 1 cut(s) 1567
BstSCI CCNGG 1 cut(s) 437
BstSFI CTRYAG 2 cut(s) 293, 555
BstUI CGCG 1 cut(s) 1339
BstV1I GCAGC 4 cut(s) 297, 711, 1289, 1444
BstX2I RGATCY 1 cut(s) 1020
BstXI CCANNNNNNTGG 1 cut(s) 978
BstYI RGATCY 1 cut(s) 1020
BsuRI GGCC 3 cut(s) 356, 586, 646
BtgZI GCGATG 1 cut(s) 1339
BtrI CACGTC 1 cut(s) 432
BtsCI GGATG 4 cut(s) 877, 984, 1041, 1252
BtsI GCAGTG 1 cut(s) 1461
BtsIMutI CAGTG 4 cut(s) 488, 1037, 1461, 1554
BveI ACCTGC 1 cut(s) 562
Cac8I GCNNGC 6 cut(s) 276, 354, 820, 1337, 1468, 1581
Cfr13I GGNCC 3 cut(s) 435, 584, 1148
Csp6I GTAC 5 cut(s) 96, 531, 982, 1207, 1477
CspCI CAANNNNNGTGG 2 cut(s) 48, 83
CviAII CATG 6 cut(s) 17, 163, 1302, 1360, 1425, 1580
CviQI GTAC 5 cut(s) 96, 531, 982, 1207, 1477
DdeI CTNAG 7 cut(s) 9, 138, 147, 158, 270, 588, 602
DpnI GATC 3 cut(s) 504, 537, 1022
DpnII GATC 3 cut(s) 502, 535, 1020
EaeI YGGCCR 1 cut(s) 644
Eam1104I CTCTTC 3 cut(s) 342, 1565, 1607
EarI CTCTTC 3 cut(s) 342, 1565, 1607
EciI GGCGGA 1 cut(s) 1059
Eco130I CCWWGG 1 cut(s) 1315
Eco31I GGTCTC 2 cut(s) 1562, 1590
Eco32I GATATC 2 cut(s) 153, 459
Eco47I GGWCC 2 cut(s) 435, 1148
Eco57I CTGAAG 2 cut(s) 84, 594
Eco91I GGTNACC 1 cut(s) 1567
EcoO109I RGGNCCY 1 cut(s) 584
EcoO65I GGTNACC 1 cut(s) 1567
EcoRI GAATTC 2 cut(s) 30, 1711
EcoRV GATATC 2 cut(s) 153, 459
EcoT14I CCWWGG 1 cut(s) 1315
EcoT22I ATGCAT 1 cut(s) 577
ErhI CCWWGG 1 cut(s) 1315
FaeI CATG 6 cut(s) 20, 166, 1305, 1363, 1428, 1583
FaqI GGGAC 5 cut(s) 194, 204, 926, 1149, 1680
FatI CATG 6 cut(s) 16, 162, 1301, 1359, 1424, 1579
FbaI TGATCA 1 cut(s) 502
Fnu4HI GCNGC 4 cut(s) 286, 700, 1278, 1458
FokI GGATG 4 cut(s) 864, 971, 1048, 1239
Fsp4HI GCNGC 4 cut(s) 286, 700, 1278, 1458
FspBI CTAG 5 cut(s) 279, 464, 819, 1121, 1284
GluI GCNGC 4 cut(s) 286, 700, 1278, 1458
GsaI CCCAGC 1 cut(s) 328
HaeIII GGCC 3 cut(s) 356, 586, 646
HapII CCGG 2 cut(s) 438, 658
Hin1II CATG 6 cut(s) 20, 166, 1305, 1363, 1428, 1583
HincII GTYRAC 2 cut(s) 544, 1081
HindII GTYRAC 2 cut(s) 544, 1081
HindIII AAGCTT 1 cut(s) 1509
HinfI GANTC 5 cut(s) 888, 1229, 1311, 1389, 1407
HpaI GTTAAC 1 cut(s) 1081
HpaII CCGG 2 cut(s) 438, 658
HphI GGTGA 4 cut(s) 48, 159, 165, 897
Hpy166II GTNNAC 3 cut(s) 544, 1081, 1649
Hpy188I TCNGA 9 cut(s) 10, 148, 189, 250, 613, 887, 1388, 1403, 1595
Hpy188III TCNNGA 5 cut(s) 221, 427, 629, 866, 1010
Hpy8I GTNNAC 3 cut(s) 544, 1081, 1649
Hpy99I CGWCG 2 cut(s) 867, 1056
HpyAV CCTTC 5 cut(s) 35, 223, 575, 957, 1139
HpyCH4III ACNGT 3 cut(s) 909, 1032, 1549
HpyCH4IV ACGT 2 cut(s) 431, 1051
HpyCH4V TGCA 9 cut(s) 341, 526, 557, 575, 1277, 1466, 1579, 1619, 1720
HpyF10VI GCNNNNNNNGC 4 cut(s) 1298, 1430, 1463, 1508
HpyF3I CTNAG 7 cut(s) 9, 138, 147, 158, 270, 588, 602
HpySE526I ACGT 2 cut(s) 431, 1051
Hsp92II CATG 6 cut(s) 20, 166, 1305, 1363, 1428, 1583
Ksp22I TGATCA 1 cut(s) 502
KspAI GTTAAC 1 cut(s) 1081
Kzo9I GATC 3 cut(s) 502, 535, 1020
LguI GCTCTTC 1 cut(s) 342
LmnI GCTCC 3 cut(s) 91, 1124, 1325
Lsp1109I GCAGC 4 cut(s) 297, 711, 1289, 1444
LweI GCATC 6 cut(s) 124, 562, 690, 831, 1136, 1479
MaeI CTAG 5 cut(s) 279, 464, 819, 1121, 1284
MaeII ACGT 2 cut(s) 431, 1051
MaeIII GTNAC 4 cut(s) 165, 1198, 1489, 1567
MalI GATC 3 cut(s) 504, 537, 1022
MboI GATC 3 cut(s) 502, 535, 1020
MfeI CAATTG 1 cut(s) 1620
MflI RGATCY 1 cut(s) 1020
MlsI TGGCCA 1 cut(s) 646
MluNI TGGCCA 1 cut(s) 646
MlyI GAGTC 2 cut(s) 1238, 1398
MmeI TCCRAC 2 cut(s) 573, 1244
Mox20I TGGCCA 1 cut(s) 646
Mph1103I ATGCAT 1 cut(s) 577
MroXI GAANNNNTTC 2 cut(s) 69, 858
MscI TGGCCA 1 cut(s) 646
MseI TTAA 4 cut(s) 764, 834, 1017, 1080
MslI CAYNNNNRTG 3 cut(s) 989, 1358, 1423
Msp20I TGGCCA 1 cut(s) 646
MspCI CTTAAG 1 cut(s) 1016
MspI CCGG 2 cut(s) 438, 658
MspR9I CCNGG 1 cut(s) 439
MunI CAATTG 1 cut(s) 1620
MvnI CGCG 1 cut(s) 1339
MwoI GCNNNNNNNGC 4 cut(s) 1298, 1430, 1463, 1508
NciI CCSGG 1 cut(s) 439
NdeII GATC 3 cut(s) 502, 535, 1020
NheI GCTAGC 1 cut(s) 818
NlaIII CATG 6 cut(s) 20, 166, 1305, 1363, 1428, 1583
NlaIV GGNNCC 3 cut(s) 996, 1321, 1667
NmuCI GTSAC 2 cut(s) 165, 1489
NsiI ATGCAT 1 cut(s) 577
NspI RCATGY 3 cut(s) 20, 166, 1583
NspV TTCGAA 1 cut(s) 28
PaeI GCATGC 1 cut(s) 1583
PciI ACATGT 1 cut(s) 16
PciSI GCTCTTC 1 cut(s) 342
PdmI GAANNNNTTC 2 cut(s) 69, 858
PfeI GAWTC 3 cut(s) 888, 1311, 1407
PflFI GACNNNGTC 2 cut(s) 433, 1050
PfoI TCCNGGA 1 cut(s) 437
PkrI GCNGC 4 cut(s) 287, 701, 1279, 1459
PleI GAGTC 2 cut(s) 1237, 1397
PpsI GAGTC 2 cut(s) 1237, 1397
PscI ACATGT 1 cut(s) 16
PsiI TTATAA 1 cut(s) 914
PspEI GGTNACC 1 cut(s) 1567
PspFI CCCAGC 1 cut(s) 324
PspN4I GGNNCC 3 cut(s) 996, 1321, 1667
PspPI GGNCC 3 cut(s) 435, 584, 1148
PstI CTGCAG 1 cut(s) 559
PsuI RGATCY 1 cut(s) 1020
PsyI GACNNNGTC 2 cut(s) 433, 1050
RsaI GTAC 5 cut(s) 97, 532, 983, 1208, 1478
RsaNI GTAC 5 cut(s) 96, 531, 982, 1207, 1477
RseI CAYNNNNRTG 3 cut(s) 989, 1358, 1423
SapI GCTCTTC 1 cut(s) 342
SaqAI TTAA 4 cut(s) 764, 834, 1017, 1080
SatI GCNGC 4 cut(s) 286, 700, 1278, 1458
Sau3AI GATC 3 cut(s) 502, 535, 1020
Sau96I GGNCC 3 cut(s) 435, 584, 1148
SchI GAGTC 2 cut(s) 1238, 1398
ScrFI CCNGG 1 cut(s) 439
SfaNI GCATC 6 cut(s) 124, 562, 690, 831, 1136, 1479
SfcI CTRYAG 2 cut(s) 293, 555
SfuI TTCGAA 1 cut(s) 28
SinI GGWCC 2 cut(s) 435, 1148
SmiMI CAYNNNNRTG 3 cut(s) 989, 1358, 1423
SmlI CTYRAG 5 cut(s) 757, 1010, 1016, 1506, 1673
SmoI CTYRAG 5 cut(s) 757, 1010, 1016, 1506, 1673
SphI GCATGC 1 cut(s) 1583
SsiI CCGC 2 cut(s) 1044, 1339
SspI AATATT 1 cut(s) 1155
SspMI CTAG 5 cut(s) 279, 464, 819, 1121, 1284
StyD4I CCNGG 1 cut(s) 437
StyI CCWWGG 1 cut(s) 1315
TaaI ACNGT 3 cut(s) 909, 1032, 1549
TaiI ACGT 2 cut(s) 434, 1054
TaqI TCGA 4 cut(s) 28, 570, 1295, 1481
TatI WGTACW 1 cut(s) 530
TfiI GAWTC 3 cut(s) 888, 1311, 1407
Tru1I TTAA 4 cut(s) 764, 834, 1017, 1080
Tru9I TTAA 4 cut(s) 764, 834, 1017, 1080
TscAI CASTG 4 cut(s) 495, 1037, 1468, 1554
TseFI GTSAC 2 cut(s) 165, 1489
TseI GCWGC 4 cut(s) 285, 699, 1277, 1457
Tsp45I GTSAC 2 cut(s) 165, 1489
TspDTI ATGAA 5 cut(s) 663, 778, 916, 1342, 1500
TspGWI ACGGA 1 cut(s) 1041
TspRI CASTG 4 cut(s) 495, 1037, 1468, 1554
Tth111I GACNNNGTC 2 cut(s) 433, 1050
Vha464I CTTAAG 1 cut(s) 1016
VpaK11BI GGWCC 2 cut(s) 435, 1148
XapI RAATTY 5 cut(s) 30, 618, 746, 1711, 1752
XceI RCATGY 3 cut(s) 20, 166, 1583
XmnI GAANNNNTTC 2 cut(s) 69, 858
XspI CTAG 5 cut(s) 279, 464, 819, 1121, 1284
Zsp2I ATGCAT 1 cut(s) 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.