MD01G1211400.v1.1

S-type anion channel

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Forward (+)
30507179 .. 30509396
2218 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1211400.v1.1.491

Sequence Viewer

Length: 1728 bp
ATGATGAAAAATAACAAAAATATGAATTCTGGAAAACAGAAATCCCTTGAACTTCCATGTCTCATCAAGTATATATTATCAAATGAAGAGGTTGGCTTTGGTGATGCTGAGGAGATTAGATCCGATGAACGTGAGCATTCTGTTGCTATTAGCATGCCAACATCACCAGAGGAAATCCATTTGCAGAACAAAAAAAGAAATCTCTTCATCGGTGGAATCCCAGCTTCTTCTGCCACACTTAAAGGTGCTAGCAGCAGCACACTGCCGAAGACAGCAAAATTTCACCTTCAGCCAATGGAAAAAAGCTCTGCATTTGAAGAGGAAATGAACACTGGACATTTCCCTTCTCATCCGAGTATTGAAAGTTTGAAAGATAAGAGATATGATACTTTCAAAACATGGTCCAGAAAACTCGACAGGAAGATAACGCTTCTCCATGGAAATAGACCGGGGGAAACTGAATCTGAGAATGTTAATGGGAAAATCGAAGAAATCGAGCGTTTACCTGCAGACCGATACTTTGATGCATTGGAAGGGCCAGAATTGGATACTCTTAGGCCTTCAGAGGAAATACTGCTTCCGGAAGACAAACAGTGGCCATTTCTTCTTCGGTATCCAGTTTCTTCGTTTAGCATCTGCCTCGGCGTTAGCAGCCAAGCAATTTTGTGGAAGGCCCTGCCTACCTCTGCCTCAATGAAATTTCTCCACATGAGCTTAACAATAAATATAGTTTTGTGGTGCATTTCAGTTGTCCTTTTAGCTATTGTTTCTTGCATCTACCTTGTAAAAGTAGCCCTTTACTTTGAAGCAGTTCGCCGTGAGTACCACCATCCAATCCGTATCAATTTCTTCTTTGCTCCATGGATAGCCCTCTTGTTCTTAGCTCTTGGAGTGCCACCTTCATTTGCTAACAACCTGCATCCATCTCTTTGGTACATTCTCATGACTCCGCTTCTATGTCTCGAGCTTAAAATCTATGGACAGTGGATGTTCGGAGGCCAGCGTAGGCTTTCAAAAGTGGCGAATCCTTTCAACCATCTCGCAATAGTTGGGAACTTTGTGGGGGCGTTGCTTGGTGCATCAATGGGACTACAAGAAGGACCAATATTCTTCTTTGCTATAGGGTTTGTTCACTACATTGTATTATTTGTTACTCTCTACCAAAGACTTCCAACAAATGATACCGTGATCCCAAAAGAACTCCATCCTGTGTTCTTTCTCTTTGTTGCAGCACCAAGTATAGCTTCAGTAGCATGGGCAAAAATCCAAGGCTCCTTTGATCATGGCTCGCGGATTGCGTACTTCATTTCCTTGTTCCTTTATCTCTCACTGGTAGTCCGGGTTAATTATTTCCGAGGATTTAAGTTTTCTATGGCATGGTGGGCTTATACTTTCCCAATGACTGGTGCTGCTATTGCAACCATCAAGTATTCAGATGAAGTCACAAATGTGGTAACACAAGCTCTGGCTGTCATACTCTCTCTCATTGCCATAATCACAGTCATTGCTCTTCTCATAACAACTATCTTGCATGGCTTAGTGCTTCAAAACCTCTTCCCTAATGACATTGCAATTGCCATTAGTGACAGAAAGCCAAACCCTAACAAGAAGTGGTTCCACGTAAATGGCTACGAGAACAACGATTCAGAAGCTGTCAAGATCGTGACCCATTTTGAGATGCAACCCCAAACTTCAGAGAGAAACTTGCATCGAGATGCCATGGTGTAA

Protein Analysis

576

Amino Acids

65.0

Weight (kDa)

8.38

Isoelectric Point (pI)

41.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SLAC1 PF03595 205 - 509 1e-45 Voltage-dependent anion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 514, 924
AccB7I CCANNNNNTGG 1 cut(s) 1403
AccII CGCG 1 cut(s) 1291
AccIII TCCGGA 1 cut(s) 580
AciI CCGC 2 cut(s) 950, 1291
AclWI GGATC 2 cut(s) 114, 1183
AcoI YGGCCR 1 cut(s) 596
AcsI RAATTY 3 cut(s) 25, 278, 698
AcuI CTGAAG 4 cut(s) 272, 546, 1230, 1677
AfaI GTAC 3 cut(s) 824, 935, 1301
AfiI CCNNNNNNNGG 1 cut(s) 1403
AgsI TTSAA 9 cut(s) 50, 317, 362, 370, 394, 806, 1014, 1033, 1547
AjuI GAANNNNNNNTTGG 2 cut(s) 1228, 1260
AleI CACNNNNGTG 1 cut(s) 1448
AluBI AGCT 9 cut(s) 224, 306, 714, 761, 884, 967, 1244, 1463, 1652
AluI AGCT 9 cut(s) 224, 306, 714, 761, 884, 967, 1244, 1463, 1652
Alw26I GTCTC 2 cut(s) 65, 965
AlwI GGATC 2 cut(s) 114, 1183
AlwNI CAGNNNCTG 1 cut(s) 1652
Ama87I CYCGRG 1 cut(s) 962
Aor13HI TCCGGA 1 cut(s) 580
AoxI GGCC 5 cut(s) 536, 557, 596, 672, 997
ApeKI GCWGC 5 cut(s) 252, 255, 651, 1229, 1409
ApoI RAATTY 3 cut(s) 25, 278, 698
ArsI GACNNNNNNTTYG 2 cut(s) 503, 535
Asp700I GAANNNNTTC 3 cut(s) 810, 1028, 1613
AspS9I GGNCC 4 cut(s) 402, 536, 673, 1100
AsuC2I CCSGG 2 cut(s) 450, 1340
AsuHPI GGTGA 3 cut(s) 113, 156, 275
AsuNHI GCTAGC 1 cut(s) 248
AvaI CYCGRG 1 cut(s) 962
AvaII GGWCC 2 cut(s) 402, 1100
BalI TGGCCA 1 cut(s) 598
BbsI GAAGAC 2 cut(s) 275, 591
BbvCI CCTCAGC 1 cut(s) 108
BbvI GCAGC 5 cut(s) 264, 267, 663, 1241, 1396
BccI CCATC 5 cut(s) 837, 931, 1044, 1212, 1430
BceAI ACGGC 1 cut(s) 801
BcgI CGANNNNNNTGC 2 cut(s) 622, 656
BciVI GTATCC 2 cut(s) 541, 624
BclI TGATCA 1 cut(s) 1279
BcnI CCSGG 2 cut(s) 450, 1340
BcoDI GTCTC 2 cut(s) 65, 965
BfaI CTAG 1 cut(s) 249
BfmI CTRYAG 2 cut(s) 507, 1119
BfuAI ACCTGC 2 cut(s) 514, 924
BfuI GTATCC 2 cut(s) 541, 624
BisI GCNGC 5 cut(s) 253, 256, 652, 1230, 1410
BlsI GCNGC 5 cut(s) 254, 257, 653, 1231, 1411
Bme1390I CCNGG 2 cut(s) 450, 1340
Bme18I GGWCC 2 cut(s) 402, 1100
BmeT110I CYCGRG 1 cut(s) 962
BmgT120I GGNCC 4 cut(s) 402, 536, 673, 1100
BmiI GGNNCC 2 cut(s) 1273, 1616
BmrFI CCNGG 2 cut(s) 450, 1340
BmsI GCATC 9 cut(s) 94, 514, 642, 783, 928, 1088, 1668, 1705, 1717
BmtI GCTAGC 1 cut(s) 252
BpiI GAAGAC 2 cut(s) 275, 591
Bpu10I CCTNAGC 1 cut(s) 108
BpuMI CCSGG 2 cut(s) 450, 1340
BsaAI YACGTR 1 cut(s) 1621
BsaJI CCNNGG 7 cut(s) 436, 449, 640, 860, 1267, 1354, 1719
BsaWI WCCGGW 1 cut(s) 580
Bsc4I CCNNNNNNNGG 1 cut(s) 1403
Bse1I ACTGG 4 cut(s) 337, 617, 1335, 1408
Bse3DI GCAATG 3 cut(s) 1485, 1503, 1566
BseAI TCCGGA 1 cut(s) 580
BseDI CCNNGG 7 cut(s) 436, 449, 640, 860, 1267, 1354, 1719
BseGI GGATG 5 cut(s) 349, 829, 919, 993, 1204
BseLI CCNNNNNNNGG 1 cut(s) 1403
BseMI GCAATG 3 cut(s) 1485, 1503, 1566
BseMII CTCAG 2 cut(s) 99, 456
BseNI ACTGG 4 cut(s) 337, 617, 1335, 1408
BseRI GAGGAG 1 cut(s) 125
BseXI GCAGC 5 cut(s) 264, 267, 663, 1241, 1396
BseYI CCCAGC 1 cut(s) 220
Bsh1236I CGCG 1 cut(s) 1291
BshFI GGCC 5 cut(s) 538, 559, 598, 674, 999
BsiHKCI CYCGRG 1 cut(s) 962
BsiSI CCGG 3 cut(s) 449, 581, 1339
BslFI GGGAC 1 cut(s) 1101
BslI CCNNNNNNNGG 1 cut(s) 1403
BsmAI GTCTC 2 cut(s) 65, 965
BsmFI GGGAC 1 cut(s) 1101
BsmI GAATGC 1 cut(s) 136
BsnI GGCC 5 cut(s) 538, 559, 598, 674, 999
BsoBI CYCGRG 1 cut(s) 962
Bsp13I TCCGGA 1 cut(s) 580
Bsp143I GATC 4 cut(s) 119, 1188, 1279, 1659
Bsp19I CCATGG 3 cut(s) 436, 860, 1719
BspACI CCGC 2 cut(s) 950, 1291
BspANI GGCC 5 cut(s) 538, 559, 598, 674, 999
BspCNI CTCAG 2 cut(s) 100, 457
BspEI TCCGGA 1 cut(s) 580
BspFNI CGCG 1 cut(s) 1291
BspHI TCATGA 1 cut(s) 942
BspLI GGNNCC 2 cut(s) 1273, 1616
BspMAI CTGCAG 1 cut(s) 511
BspMI ACCTGC 2 cut(s) 514, 924
BspOI GCTAGC 1 cut(s) 252
BspPI GGATC 2 cut(s) 114, 1183
BspQI GCTCTTC 1 cut(s) 1515
BsrDI GCAATG 3 cut(s) 1485, 1503, 1566
BsrI ACTGG 4 cut(s) 337, 617, 1335, 1408
BssECI CCNNGG 7 cut(s) 436, 449, 640, 860, 1267, 1354, 1719
BssMI GATC 4 cut(s) 119, 1188, 1279, 1659
BssT1I CCWWGG 4 cut(s) 436, 860, 1267, 1719
Bst4CI ACNGT 4 cut(s) 594, 984, 1186, 1501
Bst6I CTCTTC 5 cut(s) 81, 209, 312, 1515, 1559
BstBAI YACGTR 1 cut(s) 1621
BstC8I GCNNGC 4 cut(s) 155, 250, 1001, 1289
BstDEI CTNAG 5 cut(s) 108, 465, 554, 880, 1537
BstDSI CCRYGG 3 cut(s) 436, 860, 1719
BstF5I GGATG 5 cut(s) 349, 829, 919, 993, 1204
BstFNI CGCG 1 cut(s) 1291
BstKTI GATC 4 cut(s) 122, 1191, 1282, 1662
BstMAI GTCTC 2 cut(s) 65, 965
BstMBI GATC 4 cut(s) 119, 1188, 1279, 1659
BstMWI GCNNNNNNNGC 5 cut(s) 230, 651, 1250, 1382, 1415
BstNSI RCATGY 1 cut(s) 157
BstSCI CCNGG 2 cut(s) 448, 1338
BstSFI CTRYAG 2 cut(s) 507, 1119
BstUI CGCG 1 cut(s) 1291
BstV1I GCAGC 5 cut(s) 264, 267, 663, 1241, 1396
BstV2I GAAGAC 2 cut(s) 275, 591
BstX2I RGATCY 1 cut(s) 119
BstXI CCANNNNNNTGG 2 cut(s) 930, 1625
BstYI RGATCY 1 cut(s) 119
BsuI GTATCC 2 cut(s) 541, 624
BsuRI GGCC 5 cut(s) 538, 559, 598, 674, 999
BtgI CCRYGG 3 cut(s) 436, 860, 1719
BtsCI GGATG 5 cut(s) 349, 829, 919, 993, 1204
BtsI GCAGTG 1 cut(s) 260
BtsIMutI CAGTG 5 cut(s) 260, 330, 599, 989, 1328
BveI ACCTGC 2 cut(s) 514, 924
Cac8I GCNNGC 4 cut(s) 155, 250, 1001, 1289
CaiI CAGNNNCTG 1 cut(s) 1652
CciI TCATGA 1 cut(s) 942
Cfr13I GGNCC 4 cut(s) 402, 536, 673, 1100
Csp6I GTAC 3 cut(s) 823, 934, 1300
CviQI GTAC 3 cut(s) 823, 934, 1300
DdeI CTNAG 5 cut(s) 108, 465, 554, 880, 1537
DpnI GATC 4 cut(s) 121, 1190, 1281, 1661
DpnII GATC 4 cut(s) 119, 1188, 1279, 1659
EaeI YGGCCR 1 cut(s) 596
Eam1104I CTCTTC 5 cut(s) 81, 209, 312, 1515, 1559
EarI CTCTTC 5 cut(s) 81, 209, 312, 1515, 1559
Eco130I CCWWGG 4 cut(s) 436, 860, 1267, 1719
Eco147I AGGCCT 1 cut(s) 559
Eco47I GGWCC 2 cut(s) 402, 1100
Eco57I CTGAAG 4 cut(s) 272, 546, 1230, 1677
Eco88I CYCGRG 1 cut(s) 962
EcoO109I RGGNCCY 1 cut(s) 673
EcoRI GAATTC 1 cut(s) 25
EcoT14I CCWWGG 4 cut(s) 436, 860, 1267, 1719
EcoT22I ATGCAT 1 cut(s) 529
ErhI CCWWGG 4 cut(s) 436, 860, 1267, 1719
FalI AAGNNNNNCTT 4 cut(s) 780, 812, 1228, 1260
FaqI GGGAC 1 cut(s) 1101
FbaI TGATCA 1 cut(s) 1279
Fnu4HI GCNGC 5 cut(s) 253, 256, 652, 1230, 1410
FokI GGATG 5 cut(s) 336, 816, 906, 1000, 1191
Fsp4HI GCNGC 5 cut(s) 253, 256, 652, 1230, 1410
FspBI CTAG 1 cut(s) 249
GluI GCNGC 5 cut(s) 253, 256, 652, 1230, 1410
GsaI CCCAGC 1 cut(s) 224
HaeIII GGCC 5 cut(s) 538, 559, 598, 674, 999
HapII CCGG 3 cut(s) 449, 581, 1339
HinfI GANTC 5 cut(s) 216, 461, 946, 1024, 1643
HpaII CCGG 3 cut(s) 449, 581, 1339
HphI GGTGA 3 cut(s) 113, 156, 275
Hpy166II GTNNAC 2 cut(s) 503, 1132
Hpy188I TCNGA 9 cut(s) 124, 354, 466, 565, 995, 1355, 1435, 1648, 1696
Hpy188III TCNNGA 8 cut(s) 30, 405, 581, 943, 962, 1657, 1663, 1712
Hpy8I GTNNAC 2 cut(s) 503, 1132
HpyAV CCTTC 7 cut(s) 296, 354, 527, 570, 664, 909, 1091
HpyCH4III ACNGT 4 cut(s) 594, 984, 1186, 1501
HpyCH4IV ACGT 2 cut(s) 130, 1620
HpyF10VI GCNNNNNNNGC 5 cut(s) 230, 651, 1250, 1382, 1415
HpyF3I CTNAG 5 cut(s) 108, 465, 554, 880, 1537
HpySE526I ACGT 2 cut(s) 130, 1620
Kpn2I TCCGGA 1 cut(s) 580
Ksp22I TGATCA 1 cut(s) 1279
Kzo9I GATC 4 cut(s) 119, 1188, 1279, 1659
LguI GCTCTTC 1 cut(s) 1515
LmnI GCTCC 2 cut(s) 862, 1277
Lsp1109I GCAGC 5 cut(s) 264, 267, 663, 1241, 1396
LweI GCATC 9 cut(s) 94, 514, 642, 783, 928, 1088, 1668, 1705, 1717
MaeI CTAG 1 cut(s) 249
MaeII ACGT 2 cut(s) 130, 1620
MaeIII GTNAC 5 cut(s) 1150, 1441, 1453, 1583, 1663
MalI GATC 4 cut(s) 121, 1190, 1281, 1661
MboI GATC 4 cut(s) 119, 1188, 1279, 1659
MfeI CAATTG 1 cut(s) 1572
MflI RGATCY 1 cut(s) 119
MlsI TGGCCA 1 cut(s) 598
MluCI AATT 8 cut(s) 25, 278, 542, 660, 698, 844, 1345, 1572
MluNI TGGCCA 1 cut(s) 598
MlyI GAGTC 1 cut(s) 940
MmeI TCCRAC 1 cut(s) 1196
Mox20I TGGCCA 1 cut(s) 598
Mph1103I ATGCAT 1 cut(s) 529
MroI TCCGGA 1 cut(s) 580
MroXI GAANNNNTTC 3 cut(s) 810, 1028, 1613
MscI TGGCCA 1 cut(s) 598
MseI TTAA 6 cut(s) 240, 474, 716, 969, 1344, 1362
MslI CAYNNNNRTG 4 cut(s) 941, 1448, 1623, 1713
Msp20I TGGCCA 1 cut(s) 598
MspI CCGG 3 cut(s) 449, 581, 1339
MspR9I CCNGG 2 cut(s) 450, 1340
MunI CAATTG 1 cut(s) 1572
Mva1269I GAATGC 1 cut(s) 136
MvnI CGCG 1 cut(s) 1291
MwoI GCNNNNNNNGC 5 cut(s) 230, 651, 1250, 1382, 1415
NciI CCSGG 2 cut(s) 450, 1340
NcoI CCATGG 3 cut(s) 436, 860, 1719
NdeII GATC 4 cut(s) 119, 1188, 1279, 1659
NheI GCTAGC 1 cut(s) 248
NlaIV GGNNCC 2 cut(s) 1273, 1616
NmeAIII GCCGAG 1 cut(s) 621
NmuCI GTSAC 3 cut(s) 1441, 1583, 1663
NsiI ATGCAT 1 cut(s) 529
NspI RCATGY 1 cut(s) 157
OliI CACNNNNGTG 1 cut(s) 1448
PaeI GCATGC 1 cut(s) 157
PaeR7I CTCGAG 1 cut(s) 962
PagI TCATGA 1 cut(s) 942
PceI AGGCCT 1 cut(s) 559
PciSI GCTCTTC 1 cut(s) 1515
PcsI WCGNNNNNNNCGW 3 cut(s) 492, 1295, 1638
PctI GAATGC 1 cut(s) 136
PdmI GAANNNNTTC 3 cut(s) 810, 1028, 1613
PfeI GAWTC 4 cut(s) 216, 461, 1024, 1643
PflMI CCANNNNNTGG 1 cut(s) 1403
PkrI GCNGC 5 cut(s) 254, 257, 653, 1231, 1411
PleI GAGTC 1 cut(s) 940
PpsI GAGTC 1 cut(s) 940
Ppu21I YACGTR 1 cut(s) 1621
PspFI CCCAGC 1 cut(s) 220
PspN4I GGNNCC 2 cut(s) 1273, 1616
PspPI GGNCC 4 cut(s) 402, 536, 673, 1100
PstI CTGCAG 1 cut(s) 511
PstNI CAGNNNCTG 1 cut(s) 1652
PsuI RGATCY 1 cut(s) 119
RsaI GTAC 3 cut(s) 824, 935, 1301
RsaNI GTAC 3 cut(s) 823, 934, 1300
RseI CAYNNNNRTG 4 cut(s) 941, 1448, 1623, 1713
SapI GCTCTTC 1 cut(s) 1515
SaqAI TTAA 6 cut(s) 240, 474, 716, 969, 1344, 1362
SatI GCNGC 5 cut(s) 253, 256, 652, 1230, 1410
Sau3AI GATC 4 cut(s) 119, 1188, 1279, 1659
Sau96I GGNCC 4 cut(s) 402, 536, 673, 1100
SchI GAGTC 1 cut(s) 940
ScrFI CCNGG 2 cut(s) 450, 1340
SfaNI GCATC 9 cut(s) 94, 514, 642, 783, 928, 1088, 1668, 1705, 1717
SfcI CTRYAG 2 cut(s) 507, 1119
Sfr274I CTCGAG 1 cut(s) 962
SinI GGWCC 2 cut(s) 402, 1100
SlaI CTCGAG 1 cut(s) 962
SmiMI CAYNNNNRTG 4 cut(s) 941, 1448, 1623, 1713
SmlI CTYRAG 1 cut(s) 962
SmoI CTYRAG 1 cut(s) 962
SphI GCATGC 1 cut(s) 157
Sse9I AATT 8 cut(s) 25, 278, 542, 660, 698, 844, 1345, 1572
SseBI AGGCCT 1 cut(s) 559
SsiI CCGC 2 cut(s) 950, 1291
SspI AATATT 1 cut(s) 1107
SspMI CTAG 1 cut(s) 249
StuI AGGCCT 1 cut(s) 559
StyD4I CCNGG 2 cut(s) 448, 1338
StyI CCWWGG 4 cut(s) 436, 860, 1267, 1719
TaaI ACNGT 4 cut(s) 594, 984, 1186, 1501
TaiI ACGT 2 cut(s) 133, 1623
TaqI TCGA 5 cut(s) 414, 486, 495, 963, 1711
TaqII GACCGA 1 cut(s) 528
TasI AATT 8 cut(s) 25, 278, 542, 660, 698, 844, 1345, 1572
TfiI GAWTC 4 cut(s) 216, 461, 1024, 1643
Tru1I TTAA 6 cut(s) 240, 474, 716, 969, 1344, 1362
Tru9I TTAA 6 cut(s) 240, 474, 716, 969, 1344, 1362
TscAI CASTG 5 cut(s) 267, 337, 599, 989, 1335
TseFI GTSAC 3 cut(s) 1441, 1583, 1663
TseI GCWGC 5 cut(s) 252, 255, 651, 1229, 1409
Tsp45I GTSAC 3 cut(s) 1441, 1583, 1663
TspGWI ACGGA 1 cut(s) 827
TspRI CASTG 5 cut(s) 267, 337, 599, 989, 1335
Van91I CCANNNNNTGG 1 cut(s) 1403
VpaK11BI GGWCC 2 cut(s) 402, 1100
XapI RAATTY 3 cut(s) 25, 278, 698
XceI RCATGY 1 cut(s) 157
XhoI CTCGAG 1 cut(s) 962
XmnI GAANNNNTTC 3 cut(s) 810, 1028, 1613
XspI CTAG 1 cut(s) 249
Zsp2I ATGCAT 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.