Rroxscaffold_4G00280090

S-type anion channel

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
2741716 .. 2745614
3899 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00280090.1

Sequence Viewer

Length: 1764 bp
ATGGGGTCTGAAGAACATGTTTGCCTTCAAATTCCATCTCCTATCAAATACATATCATCAAATGAAGTGGTTCGGTTTGATAACGTTAAGGAGCATACCTTTTTCAATGACAAGCATCAGCTAACTGACCCATCAGCTAAGAAAACTGAGATGGCTGCTATGATATCTCTTAGCATGCCACCATCACCAACGGAAATTCAGTTACAGAACACAAAAGAAGTGCCCTTCAGTCCTGAAACAAATTTCAACAATGGAATTCCAGATTCTAATTCTGCCGCAACTAAGCGTGCTAGTAGCAGCCAACTACCGGAAGAAGCAGAATTTCACTCTCAGCCCCAGTCAAAAATCTCTGCATTTGAAGATCAGGCAATTCAAATAGGACATTTTCCTTATCAACCAAGTATTGAAAGATTGAAAGATAAGAGGTTTGATAATTTCAAGACATGGTCTGGGAAACTTGAAAGGCAGATATCACTACTACGGGGAAAGCCACTGCGAAAAAGTGATCAACCAGAGAATGCTTCTGTGCAAAGTACAGATCAAGTTGACCCTTTACCTGCAGACAGATACTTTGATGCATTGGAAGGGCCTGAGTTGGACACCCTTAGGGCTTCAGAGGAAATTCTGCTTCCAGAAGATAAGAAGTGGCCATTTCTTCTCCGGTATCCCATTTCTTCATTTAGCATCTGTCTTGGTGTTAGCAGCCAAGCTATTTTGTGGAAAACCCTGCCTATCTCTGCCTCCACAAAATTTCTCCACTTGAGCTTAACACCAAATTTGGTTCTCTGGTTCATTTCTCTTGCTCTATTAGTTATTGTTGCTTGCATCTACATTCTTAAAATCATCTTCTACTTTGAAGCAGTTCGTCGTGAGTATTACCATCCAATCCGAATCAACTTCTTCTTTTCCCCATTTATAGCCCTCTTGTTCACAGCTCTTGGAGTCCCACCTTCAATTTCTAACAACCTCCATCCAGCTCTTTGGTACATCCTCATGGCACCAATTCTATGTCTTGAGCTTAAAATCTATGGGCAGTGGATGTCAGGAGGCGACCGCCGGCTCTCAAAGGTGGCGAATCCTGTGAACCATCTCTCTATTGTTGGCAACTTTGTTGGGGCATTGCTAGGAGCATCAATGGGACTAAAAGAAGGACCAATATTCTTTTTTGCTGTTGGGTTGGCTCACTACACGGTCTTATTTGTAACTTTGTACCAGAGACTACCAACAAATGAGTCAGTAATCCCAAAGGAACTCCATCCTGTGTTCTTTCTGTTTGTTGCAGCACCTAGCGTAGCTTCAATGGCATGGGCAAGAATCCAAGGATCCTTTGATTGTGGCTCGCGGATTAGTTACTTCATCGCCATGTTCCTTTATCTCTCATTGGCAATCCGAGTCAATTTTTTCCGAGGATTCAAGTTCTCACTGGCATGGTGGGCATACACTTTCCCAATGACCGGTGCTGCCATTGCAACCATCAGGTACTCGAATGAAGTGACGAATGTAGCAACTCAAGCTTTGGCTGTCATACTCTCTCTCATTGCCACACTCACAGTCATGGCTCTCTTCATAGTAACCCTATTGCATGCCTTTGTGCTCCGAGACCTCTTCCCCAATGATATACCAATTGCCATTAGTGACAGAAACCCAAATAAACCACACAGAAAGTGGTTCCAATTAAAGCAGGAAAGCTCTTCGCATCCCAATGAGATTGAGAATTCCTTGAAGTCAACAACAGGCTCAGAGAAAAAGGATTTGGAAATTTGA

Protein Analysis

587

Amino Acids

66.18

Weight (kDa)

8.12

Isoelectric Point (pI)

43.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SLAC1 PF03595 222 - 526 3.9e-46 Voltage-dependent anion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 565
AccB1I GGYRCC 1 cut(s) 997
AccII CGCG 1 cut(s) 1342
AciI CCGC 3 cut(s) 276, 1054, 1342
AclI AACGTT 1 cut(s) 84
AclWI GGATC 2 cut(s) 1317, 1330
AcoI YGGCCR 1 cut(s) 647
AcuI CTGAAG 3 cut(s) 30, 211, 597
AfaI GTAC 4 cut(s) 535, 986, 1211, 1481
AfiI CCNNNNNNNGG 2 cut(s) 307, 1454
AflIII ACRYGT 1 cut(s) 16
AgeI ACCGGT 1 cut(s) 1454
AjuI GAANNNNNNNTTGG 1 cut(s) 1736
Alw21I GWGCWC 1 cut(s) 1596
Alw26I GTCTC 2 cut(s) 1210, 1593
AlwI GGATC 2 cut(s) 1317, 1330
AoxI GGCC 2 cut(s) 587, 647
ApeKI GCWGC 5 cut(s) 155, 297, 702, 1280, 1460
ArsI GACNNNNNNTTYG 2 cut(s) 554, 586
AsiGI ACCGGT 1 cut(s) 1454
Asp700I GAANNNNTTC 2 cut(s) 69, 861
AspS9I GGNCC 2 cut(s) 587, 1151
AsuHPI GGTGA 1 cut(s) 177
AvaII GGWCC 1 cut(s) 1151
AxyI CCTNAGG 1 cut(s) 605
BaeGI GKGCMC 1 cut(s) 225
BalI TGGCCA 1 cut(s) 649
BamHI GGATCC 1 cut(s) 1322
BanI GGYRCC 1 cut(s) 997
Bbv12I GWGCWC 1 cut(s) 1596
BbvI GCAGC 5 cut(s) 142, 309, 714, 1292, 1447
BccI CCATC 9 cut(s) 43, 139, 145, 190, 888, 978, 1095, 1263, 1481
BciVI GTATCC 1 cut(s) 675
BclI TGATCA 1 cut(s) 505
BcoDI GTCTC 2 cut(s) 1210, 1593
BfaI CTAG 3 cut(s) 291, 1124, 1287
BfmI CTRYAG 1 cut(s) 558
BfuAI ACCTGC 1 cut(s) 565
BfuI GTATCC 1 cut(s) 675
BisI GCNGC 6 cut(s) 156, 276, 298, 703, 1281, 1461
BlsI GCNGC 6 cut(s) 157, 277, 299, 704, 1282, 1462
Bme18I GGWCC 1 cut(s) 1151
BmgT120I GGNCC 2 cut(s) 587, 1151
BmiI GGNNCC 3 cut(s) 999, 1324, 1670
BmrI ACTGGG 1 cut(s) 331
BmsI GCATC 6 cut(s) 124, 565, 693, 834, 1139, 1705
BmuI ACTGGG 1 cut(s) 331
BpuEI CTTGAG 3 cut(s) 781, 1034, 1494
BsaI GGTCTC 1 cut(s) 1593
BsaJI CCNNGG 2 cut(s) 1318, 1405
BsaWI WCCGGW 3 cut(s) 307, 660, 1454
Bsc4I CCNNNNNNNGG 2 cut(s) 307, 1454
Bse118I RCCGGY 2 cut(s) 1056, 1454
Bse1I ACTGG 2 cut(s) 337, 1428
Bse21I CCTNAGG 1 cut(s) 605
Bse3DI GCAATG 3 cut(s) 1118, 1464, 1536
BseDI CCNNGG 2 cut(s) 1318, 1405
BseGI GGATG 6 cut(s) 880, 970, 987, 1044, 1255, 1696
BseLI CCNNNNNNNGG 2 cut(s) 307, 1454
BseMI GCAATG 3 cut(s) 1118, 1464, 1536
BseMII CTCAG 4 cut(s) 138, 344, 582, 1752
BseNI ACTGG 2 cut(s) 337, 1428
BseSI GKGCMC 1 cut(s) 225
BseXI GCAGC 5 cut(s) 142, 309, 714, 1292, 1447
Bsh1236I CGCG 1 cut(s) 1342
Bsh1285I CGRYCG 1 cut(s) 1054
BshFI GGCC 2 cut(s) 589, 649
BshNI GGYRCC 1 cut(s) 997
BshTI ACCGGT 1 cut(s) 1454
BsiEI CGRYCG 1 cut(s) 1054
BsiHKAI GWGCWC 1 cut(s) 1596
BsiSI CCGG 4 cut(s) 308, 661, 1057, 1455
BslFI GGGAC 2 cut(s) 929, 1152
BslI CCNNNNNNNGG 2 cut(s) 307, 1454
BsmAI GTCTC 2 cut(s) 1210, 1593
BsmFI GGGAC 2 cut(s) 929, 1152
BsmI GAATGC 1 cut(s) 523
BsnI GGCC 2 cut(s) 589, 649
Bso31I GGTCTC 1 cut(s) 1593
Bsp1286I GDGCHC 2 cut(s) 225, 1596
Bsp143I GATC 4 cut(s) 361, 505, 538, 1322
BspACI CCGC 3 cut(s) 276, 1054, 1342
BspANI GGCC 2 cut(s) 589, 649
BspCNI CTCAG 4 cut(s) 139, 343, 583, 1751
BspFNI CGCG 1 cut(s) 1342
BspLI GGNNCC 3 cut(s) 999, 1324, 1670
BspMAI CTGCAG 1 cut(s) 562
BspMI ACCTGC 1 cut(s) 565
BspPI GGATC 2 cut(s) 1317, 1330
BspQI GCTCTTC 1 cut(s) 1696
BspT107I GGYRCC 1 cut(s) 997
BspTNI GGTCTC 1 cut(s) 1593
BsrDI GCAATG 3 cut(s) 1118, 1464, 1536
BsrFI RCCGGY 2 cut(s) 1056, 1454
BsrI ACTGG 2 cut(s) 337, 1428
BssAI RCCGGY 2 cut(s) 1056, 1454
BssECI CCNNGG 2 cut(s) 1318, 1405
BssMI GATC 4 cut(s) 361, 505, 538, 1322
BssT1I CCWWGG 1 cut(s) 1318
Bst4CI ACNGT 2 cut(s) 1192, 1552
Bst6I CTCTTC 3 cut(s) 1568, 1610, 1696
BstC8I GCNNGC 6 cut(s) 176, 288, 823, 1058, 1340, 1584
BstDEI CTNAG 8 cut(s) 138, 147, 170, 282, 330, 591, 605, 1738
BstF5I GGATG 6 cut(s) 880, 970, 987, 1044, 1255, 1696
BstFNI CGCG 1 cut(s) 1342
BstKTI GATC 4 cut(s) 364, 508, 541, 1325
BstMAI GTCTC 2 cut(s) 1210, 1593
BstMBI GATC 4 cut(s) 361, 505, 538, 1322
BstMCI CGRYCG 1 cut(s) 1054
BstMWI GCNNNNNNNGC 4 cut(s) 1301, 1433, 1466, 1511
BstNSI RCATGY 3 cut(s) 20, 178, 1586
BstSFI CTRYAG 1 cut(s) 558
BstSLI GKGCMC 1 cut(s) 225
BstUI CGCG 1 cut(s) 1342
BstV1I GCAGC 5 cut(s) 142, 309, 714, 1292, 1447
BstX2I RGATCY 1 cut(s) 1322
BstXI CCANNNNNNTGG 1 cut(s) 981
BstYI RGATCY 1 cut(s) 1322
Bsu36I CCTNAGG 1 cut(s) 605
BsuI GTATCC 1 cut(s) 675
BsuRI GGCC 2 cut(s) 589, 649
BtgZI GCGATG 1 cut(s) 1342
BtsCI GGATG 6 cut(s) 880, 970, 987, 1044, 1255, 1696
BtsI GCAGTG 2 cut(s) 491, 1040
BtsIMutI CAGTG 3 cut(s) 491, 1040, 1421
BveI ACCTGC 1 cut(s) 565
Cac8I GCNNGC 6 cut(s) 176, 288, 823, 1058, 1340, 1584
Cfr10I RCCGGY 2 cut(s) 1056, 1454
Cfr13I GGNCC 2 cut(s) 587, 1151
Csp6I GTAC 4 cut(s) 534, 985, 1210, 1480
CspAI ACCGGT 1 cut(s) 1454
CspCI CAANNNNNGTGG 2 cut(s) 48, 83
CviAII CATG 9 cut(s) 17, 175, 444, 994, 1305, 1363, 1428, 1555, 1583
CviQI GTAC 4 cut(s) 534, 985, 1210, 1480
DdeI CTNAG 8 cut(s) 138, 147, 170, 282, 330, 591, 605, 1738
DpnI GATC 4 cut(s) 363, 507, 540, 1324
DpnII GATC 4 cut(s) 361, 505, 538, 1322
EaeI YGGCCR 1 cut(s) 647
Eam1104I CTCTTC 3 cut(s) 1568, 1610, 1696
EarI CTCTTC 3 cut(s) 1568, 1610, 1696
Eco130I CCWWGG 1 cut(s) 1318
Eco31I GGTCTC 1 cut(s) 1593
Eco32I GATATC 2 cut(s) 165, 471
Eco47I GGWCC 1 cut(s) 1151
Eco57I CTGAAG 3 cut(s) 30, 211, 597
Eco81I CCTNAGG 1 cut(s) 605
EcoO109I RGGNCCY 1 cut(s) 587
EcoRI GAATTC 2 cut(s) 255, 1714
EcoRV GATATC 2 cut(s) 165, 471
EcoT14I CCWWGG 1 cut(s) 1318
EcoT22I ATGCAT 1 cut(s) 580
ErhI CCWWGG 1 cut(s) 1318
FaeI CATG 9 cut(s) 20, 178, 447, 997, 1308, 1366, 1431, 1558, 1586
FaqI GGGAC 2 cut(s) 929, 1152
FatI CATG 9 cut(s) 16, 174, 443, 993, 1304, 1362, 1427, 1554, 1582
FbaI TGATCA 1 cut(s) 505
Fnu4HI GCNGC 6 cut(s) 156, 276, 298, 703, 1281, 1461
FokI GGATG 6 cut(s) 867, 957, 974, 1051, 1242, 1683
Fsp4HI GCNGC 6 cut(s) 156, 276, 298, 703, 1281, 1461
FspBI CTAG 3 cut(s) 291, 1124, 1287
GluI GCNGC 6 cut(s) 156, 276, 298, 703, 1281, 1461
HaeIII GGCC 2 cut(s) 589, 649
HapII CCGG 4 cut(s) 308, 661, 1057, 1455
Hin1II CATG 9 cut(s) 20, 178, 447, 997, 1308, 1366, 1431, 1558, 1586
HincII GTYRAC 2 cut(s) 547, 1728
HindII GTYRAC 2 cut(s) 547, 1728
HindIII AAGCTT 1 cut(s) 1512
HinfI GANTC 8 cut(s) 263, 891, 942, 1075, 1232, 1314, 1392, 1410
HpaII CCGG 4 cut(s) 308, 661, 1057, 1455
HphI GGTGA 1 cut(s) 177
Hpy166II GTNNAC 4 cut(s) 547, 930, 1084, 1728
Hpy188I TCNGA 7 cut(s) 10, 616, 890, 1391, 1406, 1598, 1741
Hpy188III TCNNGA 7 cut(s) 233, 260, 439, 632, 869, 1013, 1044
Hpy8I GTNNAC 4 cut(s) 547, 930, 1084, 1728
Hpy99I CGWCG 1 cut(s) 870
HpyAV CCTTC 5 cut(s) 35, 235, 578, 960, 1142
HpyCH4III ACNGT 2 cut(s) 1192, 1552
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 8 cut(s) 353, 529, 560, 578, 825, 1280, 1469, 1582
HpyF10VI GCNNNNNNNGC 4 cut(s) 1301, 1433, 1466, 1511
HpyF3I CTNAG 8 cut(s) 138, 147, 170, 282, 330, 591, 605, 1738
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 9 cut(s) 20, 178, 447, 997, 1308, 1366, 1431, 1558, 1586
KroI GCCGGC 1 cut(s) 1056
KroNI GCCGGC 1 cut(s) 1058
Ksp22I TGATCA 1 cut(s) 505
Kzo9I GATC 4 cut(s) 361, 505, 538, 1322
LguI GCTCTTC 1 cut(s) 1696
LmnI GCTCC 3 cut(s) 91, 1127, 1599
Lsp1109I GCAGC 5 cut(s) 142, 309, 714, 1292, 1447
LweI GCATC 6 cut(s) 124, 565, 693, 834, 1139, 1705
MaeI CTAG 3 cut(s) 291, 1124, 1287
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 6 cut(s) 201, 1201, 1349, 1492, 1570, 1634
MalI GATC 4 cut(s) 363, 507, 540, 1324
MboI GATC 4 cut(s) 361, 505, 538, 1322
MfeI CAATTG 1 cut(s) 1623
MflI RGATCY 1 cut(s) 1322
MhlI GDGCHC 2 cut(s) 225, 1596
MlsI TGGCCA 1 cut(s) 649
MluNI TGGCCA 1 cut(s) 649
MlyI GAGTC 3 cut(s) 951, 1241, 1401
MmeI TCCRAC 1 cut(s) 576
MnlI CCTC 9 cut(s) 417, 610, 751, 932, 977, 1001, 1040, 1400, 1613
Mox20I TGGCCA 1 cut(s) 649
Mph1103I ATGCAT 1 cut(s) 580
MroNI GCCGGC 1 cut(s) 1056
MroXI GAANNNNTTC 2 cut(s) 69, 861
MscI TGGCCA 1 cut(s) 649
MseI TTAA 5 cut(s) 87, 767, 837, 1020, 1676
MslI CAYNNNNRTG 5 cut(s) 992, 1361, 1426, 1553, 1701
Msp20I TGGCCA 1 cut(s) 649
MspI CCGG 4 cut(s) 308, 661, 1057, 1455
MunI CAATTG 1 cut(s) 1623
Mva1269I GAATGC 1 cut(s) 523
MvnI CGCG 1 cut(s) 1342
MwoI GCNNNNNNNGC 4 cut(s) 1301, 1433, 1466, 1511
NaeI GCCGGC 1 cut(s) 1058
NdeII GATC 4 cut(s) 361, 505, 538, 1322
NgoMIV GCCGGC 1 cut(s) 1056
NlaIII CATG 9 cut(s) 20, 178, 447, 997, 1308, 1366, 1431, 1558, 1586
NlaIV GGNNCC 3 cut(s) 999, 1324, 1670
NmuCI GTSAC 2 cut(s) 1492, 1634
NsiI ATGCAT 1 cut(s) 580
NspI RCATGY 3 cut(s) 20, 178, 1586
PaeI GCATGC 2 cut(s) 178, 1586
PciI ACATGT 1 cut(s) 16
PciSI GCTCTTC 1 cut(s) 1696
PctI GAATGC 1 cut(s) 523
PdiI GCCGGC 1 cut(s) 1058
PdmI GAANNNNTTC 2 cut(s) 69, 861
PfeI GAWTC 5 cut(s) 263, 891, 1075, 1314, 1410
PflFI GACNNNGTC 1 cut(s) 445
PinAI ACCGGT 1 cut(s) 1454
PkrI GCNGC 6 cut(s) 157, 277, 299, 704, 1282, 1462
PleI GAGTC 3 cut(s) 950, 1240, 1400
PpsI GAGTC 3 cut(s) 950, 1240, 1400
PscI ACATGT 1 cut(s) 16
Psp1406I AACGTT 1 cut(s) 84
PspN4I GGNNCC 3 cut(s) 999, 1324, 1670
PspPI GGNCC 2 cut(s) 587, 1151
PstI CTGCAG 1 cut(s) 562
PsuI RGATCY 1 cut(s) 1322
PsyI GACNNNGTC 1 cut(s) 445
RsaI GTAC 4 cut(s) 535, 986, 1211, 1481
RsaNI GTAC 4 cut(s) 534, 985, 1210, 1480
RseI CAYNNNNRTG 5 cut(s) 992, 1361, 1426, 1553, 1701
SapI GCTCTTC 1 cut(s) 1696
SaqAI TTAA 5 cut(s) 87, 767, 837, 1020, 1676
SatI GCNGC 6 cut(s) 156, 276, 298, 703, 1281, 1461
Sau3AI GATC 4 cut(s) 361, 505, 538, 1322
Sau96I GGNCC 2 cut(s) 587, 1151
SchI GAGTC 3 cut(s) 951, 1241, 1401
SduI GDGCHC 2 cut(s) 225, 1596
SfaNI GCATC 6 cut(s) 124, 565, 693, 834, 1139, 1705
SfcI CTRYAG 1 cut(s) 558
SinI GGWCC 1 cut(s) 1151
SmiMI CAYNNNNRTG 5 cut(s) 992, 1361, 1426, 1553, 1701
SmlI CTYRAG 3 cut(s) 760, 1013, 1509
SmoI CTYRAG 3 cut(s) 760, 1013, 1509
SphI GCATGC 2 cut(s) 178, 1586
SsiI CCGC 3 cut(s) 276, 1054, 1342
SspI AATATT 1 cut(s) 1158
SspMI CTAG 3 cut(s) 291, 1124, 1287
StyI CCWWGG 1 cut(s) 1318
TaaI ACNGT 2 cut(s) 1192, 1552
TaiI ACGT 1 cut(s) 87
TaqI TCGA 1 cut(s) 1484
TatI WGTACW 1 cut(s) 533
TauI GCSGC 1 cut(s) 278
TfiI GAWTC 5 cut(s) 263, 891, 1075, 1314, 1410
Tru1I TTAA 5 cut(s) 87, 767, 837, 1020, 1676
Tru9I TTAA 5 cut(s) 87, 767, 837, 1020, 1676
TscAI CASTG 3 cut(s) 498, 1040, 1428
TseFI GTSAC 2 cut(s) 1492, 1634
TseI GCWGC 5 cut(s) 155, 297, 702, 1280, 1460
Tsp45I GTSAC 2 cut(s) 1492, 1634
TspDTI ATGAA 6 cut(s) 78, 666, 781, 1345, 1503, 1555
TspGWI ACGGA 1 cut(s) 206
TspRI CASTG 3 cut(s) 498, 1040, 1428
Tth111I GACNNNGTC 1 cut(s) 445
VpaK11BI GGWCC 1 cut(s) 1151
XceI RCATGY 3 cut(s) 20, 178, 1586
XcmI CCANNNNNNNNNTGG 1 cut(s) 1662
XmnI GAANNNNTTC 2 cut(s) 69, 861
XspI CTAG 3 cut(s) 291, 1124, 1287
Zsp2I ATGCAT 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.