Rmu_sc0024534.1_g000001

S-type anion channel

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0024534.1
Physical Location & Seq
Forward (+)
1 .. 1732
1732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0024534.1_g000001.1.cds

Sequence Viewer

Length: 1376 bp
gagataacaggtttgataatttcaagacatggtccggaaaatttgaaaggcagataacactactacggggaaagacaccgccaaaaagtgctcaaacagagaatgcttttgctcaacgtacagatcaagttgaccgtttacccgcagaccgttactttgatgcattggaagggcctgagttggacactcttagggcttcagaggaaataatgcttccagaggacaagcagtggccatttcttctccggtatcccatttcttcatttagcatctgccttggtgtcagcagccacgctattttgtggaaaaccctacctacctcggcctccacgaaatttctccacttgaaccttaaaacaaatttggctctgtggtgcattgccgttgctacattagttggtgttgcttgcatctaccttcttaaaatcatcttttactttgaagcagttcgtcgcgagtatttccacccaattcgaatcaacttcttcttttccccatttatagccatcttattcttagctctaggagtgccaccttccatttctagcaacctccatccagctctctggtacatcctcatgaccccacttttatgtcttgagcttaaaatctatggacagtggatgtcaggagggcaacgccggctttcaaaagtagccaatcctgttaaccatctctccattgttggcaactttgtgggggctctgctaggtgcttcaatgggactaagagaaggaccaatattcttcttcgcagttgggatggctcactatatggtcttatttgtaactctttaccagagacttccaacaaatgagacagtaatcccaaaggagctccatcctgtgttctttctgtttgttgctacacctagcgcagcttccatggcttgggcaagaatccaaggctcctttgattatggctcgcggattgcttacttcatcgccatgttcctttatctctcactggcagtccgaatcaatttcttccgaggattcaagttctcattggcatggtgggcatacactttcccaatgactggtgctgccattgcaaccattaggtactcgaatgaagtaacgactgtagcaactcaagctttggctgtcatactctccatcattgccacgctcacggtcactgctctcttcataacaaccgtcttgcatgcctttgtgcttcaagacctcttccccaatgacattgcaattgccatcagcgacagaagcccaaatgtagcacgcagaaagtggttccatctaaaaaatggaacctcttcggattcaaaagacattgagaatttcttgaagtcagcaacaagctcagaaaaaaaggatttggaaattaaaacgttacttgaaactgccaagctctag

Protein Analysis

457

Amino Acids

51.56

Weight (kDa)

9.4

Isoelectric Point (pI)

33.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 890, 1039
AccII CGCG 2 cut(s) 455, 927
AccIII TCCGGA 1 cut(s) 34
AciI CCGC 3 cut(s) 79, 143, 927
AclI AACGTT 1 cut(s) 1351
AcoI YGGCCR 1 cut(s) 232
AcsI RAATTY 4 cut(s) 40, 334, 360, 1299
AcuI CTGAAG 1 cut(s) 182
AfaI GTAC 3 cut(s) 120, 571, 1066
AfiI CCNNNNNNNGG 2 cut(s) 890, 1039
AluBI AGCT 8 cut(s) 520, 562, 603, 837, 880, 1099, 1322, 1371
AluI AGCT 8 cut(s) 520, 562, 603, 837, 880, 1099, 1322, 1371
Alw21I GWGCWC 2 cut(s) 93, 839
Alw26I GTCTC 2 cut(s) 795, 811
Aor13HI TCCGGA 1 cut(s) 34
AoxI GGCC 3 cut(s) 172, 232, 323
ApeKI GCWGC 3 cut(s) 287, 877, 1045
ApoI RAATTY 4 cut(s) 40, 334, 360, 1299
ArsI GACNNNNNNTTYG 2 cut(s) 139, 171
Asp700I GAANNNNTTC 2 cut(s) 446, 1275
AspLEI GCGC 1 cut(s) 877
AspS9I GGNCC 3 cut(s) 32, 172, 736
AsuII TTCGAA 1 cut(s) 474
AvaII GGWCC 2 cut(s) 32, 736
BalI TGGCCA 1 cut(s) 234
BanII GRGCYC 2 cut(s) 705, 839
Bbv12I GWGCWC 2 cut(s) 93, 839
BbvI GCAGC 3 cut(s) 299, 889, 1032
BccI CCATC 8 cut(s) 514, 563, 680, 756, 848, 1126, 1222, 1265
BceAI ACGGC 1 cut(s) 367
BciVI GTATCC 1 cut(s) 260
BcoDI GTCTC 2 cut(s) 795, 811
BfaI CTAG 5 cut(s) 523, 545, 709, 872, 1374
BfmI CTRYAG 1 cut(s) 1085
BfuI GTATCC 1 cut(s) 260
BisI GCNGC 3 cut(s) 288, 878, 1046
BlsI GCNGC 3 cut(s) 289, 879, 1047
Bme18I GGWCC 2 cut(s) 32, 736
BmgT120I GGNCC 3 cut(s) 32, 172, 736
BmiI GGNNCC 3 cut(s) 909, 1255, 1272
BmsI GCATC 3 cut(s) 150, 278, 419
Bpu14I TTCGAA 1 cut(s) 474
BpuEI CTTGAG 2 cut(s) 619, 1079
BsaJI CCNNGG 5 cut(s) 276, 320, 884, 903, 990
BsaWI WCCGGW 2 cut(s) 34, 245
BsaXI ACNNNNNCTCC 2 cut(s) 661, 691
Bsc4I CCNNNNNNNGG 2 cut(s) 890, 1039
Bse118I RCCGGY 1 cut(s) 641
Bse1I ACTGG 2 cut(s) 971, 1044
Bse3DI GCAATG 4 cut(s) 377, 1049, 1121, 1202
BseAI TCCGGA 1 cut(s) 34
BseDI CCNNGG 5 cut(s) 276, 320, 884, 903, 990
BseGI GGATG 5 cut(s) 555, 572, 629, 767, 840
BseLI CCNNNNNNNGG 2 cut(s) 890, 1039
BseMI GCAATG 4 cut(s) 377, 1049, 1121, 1202
BseMII CTCAG 2 cut(s) 167, 1337
BseNI ACTGG 2 cut(s) 971, 1044
BseXI GCAGC 3 cut(s) 299, 889, 1032
Bsh1236I CGCG 2 cut(s) 455, 927
BshFI GGCC 3 cut(s) 174, 234, 325
BsiHKAI GWGCWC 2 cut(s) 93, 839
BsiSI CCGG 3 cut(s) 35, 246, 642
BslFI GGGAC 1 cut(s) 737
BslI CCNNNNNNNGG 2 cut(s) 890, 1039
BsmAI GTCTC 2 cut(s) 795, 811
BsmFI GGGAC 1 cut(s) 737
BsmI GAATGC 1 cut(s) 108
BsnI GGCC 3 cut(s) 174, 234, 325
Bsp119I TTCGAA 1 cut(s) 474
Bsp1286I GDGCHC 3 cut(s) 93, 705, 839
Bsp13I TCCGGA 1 cut(s) 34
Bsp143I GATC 1 cut(s) 123
Bsp19I CCATGG 1 cut(s) 884
Bsp68I TCGCGA 1 cut(s) 455
BspACI CCGC 3 cut(s) 79, 143, 927
BspANI GGCC 3 cut(s) 174, 234, 325
BspCNI CTCAG 2 cut(s) 168, 1336
BspEI TCCGGA 1 cut(s) 34
BspFNI CGCG 2 cut(s) 455, 927
BspHI TCATGA 1 cut(s) 578
BspLI GGNNCC 3 cut(s) 909, 1255, 1272
BspT104I TTCGAA 1 cut(s) 474
BsrDI GCAATG 4 cut(s) 377, 1049, 1121, 1202
BsrFI RCCGGY 1 cut(s) 641
BsrI ACTGG 2 cut(s) 971, 1044
BssAI RCCGGY 1 cut(s) 641
BssECI CCNNGG 5 cut(s) 276, 320, 884, 903, 990
BssMI GATC 1 cut(s) 123
BssT1I CCWWGG 3 cut(s) 276, 884, 903
Bst4CI ACNGT 7 cut(s) 136, 151, 620, 822, 1086, 1137, 1161
Bst6I CTCTTC 3 cut(s) 1153, 1195, 1281
BstBI TTCGAA 1 cut(s) 474
BstC8I GCNNGC 5 cut(s) 408, 643, 925, 1169, 1242
BstDEI CTNAG 5 cut(s) 176, 190, 516, 727, 1323
BstDSI CCRYGG 1 cut(s) 884
BstF5I GGATG 5 cut(s) 555, 572, 629, 767, 840
BstFNI CGCG 2 cut(s) 455, 927
BstHHI GCGC 1 cut(s) 877
BstKTI GATC 1 cut(s) 126
BstMAI GTCTC 2 cut(s) 795, 811
BstMBI GATC 1 cut(s) 123
BstMWI GCNNNNNNNGC 6 cut(s) 642, 886, 1018, 1051, 1096, 1226
BstNSI RCATGY 1 cut(s) 1171
BstSFI CTRYAG 1 cut(s) 1085
BstUI CGCG 2 cut(s) 455, 927
BstV1I GCAGC 3 cut(s) 299, 889, 1032
BstXI CCANNNNNNTGG 1 cut(s) 566
BsuI GTATCC 1 cut(s) 260
BsuRI GGCC 3 cut(s) 174, 234, 325
BtgI CCRYGG 1 cut(s) 884
BtgZI GCGATG 1 cut(s) 927
BtsCI GGATG 5 cut(s) 555, 572, 629, 767, 840
BtsI GCAGTG 2 cut(s) 235, 1139
BtsIMutI CAGTG 4 cut(s) 235, 625, 964, 1139
BtuMI TCGCGA 1 cut(s) 455
Cac8I GCNNGC 5 cut(s) 408, 643, 925, 1169, 1242
CciI TCATGA 1 cut(s) 578
CfoI GCGC 1 cut(s) 877
Cfr10I RCCGGY 1 cut(s) 641
Cfr13I GGNCC 3 cut(s) 32, 172, 736
Csp6I GTAC 3 cut(s) 119, 570, 1065
CviAII CATG 6 cut(s) 29, 579, 885, 948, 1013, 1168
CviQI GTAC 3 cut(s) 119, 570, 1065
DdeI CTNAG 5 cut(s) 176, 190, 516, 727, 1323
DpnI GATC 1 cut(s) 125
DpnII GATC 1 cut(s) 123
EaeI YGGCCR 1 cut(s) 232
Eam1104I CTCTTC 3 cut(s) 1153, 1195, 1281
EarI CTCTTC 3 cut(s) 1153, 1195, 1281
Ecl136II GAGCTC 1 cut(s) 837
Eco130I CCWWGG 3 cut(s) 276, 884, 903
Eco24I GRGCYC 2 cut(s) 705, 839
Eco47I GGWCC 2 cut(s) 32, 736
Eco53kI GAGCTC 1 cut(s) 837
Eco57I CTGAAG 1 cut(s) 182
EcoICRI GAGCTC 1 cut(s) 837
EcoO109I RGGNCCY 1 cut(s) 172
EcoT14I CCWWGG 3 cut(s) 276, 884, 903
EcoT22I ATGCAT 1 cut(s) 165
EcoT38I GRGCYC 2 cut(s) 705, 839
ErhI CCWWGG 3 cut(s) 276, 884, 903
FaeI CATG 6 cut(s) 32, 582, 888, 951, 1016, 1171
FaqI GGGAC 1 cut(s) 737
FatI CATG 6 cut(s) 28, 578, 884, 947, 1012, 1167
FauI CCCGC 1 cut(s) 150
Fnu4HI GCNGC 3 cut(s) 288, 878, 1046
FokI GGATG 5 cut(s) 542, 559, 636, 774, 827
FriOI GRGCYC 2 cut(s) 705, 839
Fsp4HI GCNGC 3 cut(s) 288, 878, 1046
FspBI CTAG 5 cut(s) 523, 545, 709, 872, 1374
GlaI GCGC 1 cut(s) 876
GluI GCNGC 3 cut(s) 288, 878, 1046
HaeIII GGCC 3 cut(s) 174, 234, 325
HapII CCGG 3 cut(s) 35, 246, 642
HhaI GCGC 1 cut(s) 877
Hin1II CATG 6 cut(s) 32, 582, 888, 951, 1016, 1171
Hin6I GCGC 1 cut(s) 875
HinP1I GCGC 1 cut(s) 875
HincII GTYRAC 2 cut(s) 132, 669
HindII GTYRAC 2 cut(s) 132, 669
HindIII AAGCTT 1 cut(s) 1097
HinfI GANTC 5 cut(s) 476, 899, 977, 995, 1282
HpaI GTTAAC 1 cut(s) 669
HpaII CCGG 3 cut(s) 35, 246, 642
Hpy166II GTNNAC 3 cut(s) 132, 139, 669
Hpy188I TCNGA 5 cut(s) 201, 976, 991, 1281, 1326
Hpy188III TCNNGA 9 cut(s) 24, 35, 217, 454, 579, 598, 629, 1183, 1305
Hpy8I GTNNAC 3 cut(s) 132, 139, 669
Hpy99I CGWCG 1 cut(s) 455
HpyAV CCTTC 4 cut(s) 163, 427, 545, 727
HpyCH4III ACNGT 7 cut(s) 136, 151, 620, 822, 1086, 1137, 1161
HpyCH4IV ACGT 2 cut(s) 117, 1351
HpyCH4V TGCA 6 cut(s) 163, 377, 410, 1054, 1167, 1207
HpyF10VI GCNNNNNNNGC 6 cut(s) 642, 886, 1018, 1051, 1096, 1226
HpyF3I CTNAG 5 cut(s) 176, 190, 516, 727, 1323
HpySE526I ACGT 2 cut(s) 117, 1351
Hsp92II CATG 6 cut(s) 32, 582, 888, 951, 1016, 1171
HspAI GCGC 1 cut(s) 875
Kpn2I TCCGGA 1 cut(s) 34
KroI GCCGGC 1 cut(s) 641
KroNI GCCGGC 1 cut(s) 643
KspAI GTTAAC 1 cut(s) 669
Kzo9I GATC 1 cut(s) 123
LmnI GCTCC 3 cut(s) 834, 842, 913
Lsp1109I GCAGC 3 cut(s) 299, 889, 1032
LweI GCATC 3 cut(s) 150, 278, 419
MaeI CTAG 5 cut(s) 523, 545, 709, 872, 1374
MaeII ACGT 2 cut(s) 117, 1351
MaeIII GTNAC 5 cut(s) 151, 786, 1077, 1137, 1352
MalI GATC 1 cut(s) 125
MboI GATC 1 cut(s) 123
MboII GAAGA 9 cut(s) 232, 251, 477, 738, 741, 978, 1140, 1182, 1268
MfeI CAATTG 1 cut(s) 1208
MhlI GDGCHC 3 cut(s) 93, 705, 839
MlsI TGGCCA 1 cut(s) 234
MluCI AATT 9 cut(s) 18, 40, 334, 360, 470, 981, 1208, 1299, 1343
MluNI TGGCCA 1 cut(s) 234
MmeI TCCRAC 2 cut(s) 161, 832
Mox20I TGGCCA 1 cut(s) 234
Mph1103I ATGCAT 1 cut(s) 165
MroI TCCGGA 1 cut(s) 34
MroNI GCCGGC 1 cut(s) 641
MroXI GAANNNNTTC 2 cut(s) 446, 1275
MscI TGGCCA 1 cut(s) 234
MseI TTAA 5 cut(s) 353, 422, 605, 668, 1346
MslI CAYNNNNRTG 4 cut(s) 577, 591, 946, 1011
Msp20I TGGCCA 1 cut(s) 234
MspI CCGG 3 cut(s) 35, 246, 642
MunI CAATTG 1 cut(s) 1208
Mva1269I GAATGC 1 cut(s) 108
MvnI CGCG 2 cut(s) 455, 927
MwoI GCNNNNNNNGC 6 cut(s) 642, 886, 1018, 1051, 1096, 1226
NaeI GCCGGC 1 cut(s) 643
NcoI CCATGG 1 cut(s) 884
NdeII GATC 1 cut(s) 123
NgoMIV GCCGGC 1 cut(s) 641
NlaIII CATG 6 cut(s) 32, 582, 888, 951, 1016, 1171
NlaIV GGNNCC 3 cut(s) 909, 1255, 1272
NmeAIII GCCGAG 1 cut(s) 301
NmuCI GTSAC 1 cut(s) 1137
NruI TCGCGA 1 cut(s) 455
NsiI ATGCAT 1 cut(s) 165
NspI RCATGY 1 cut(s) 1171
NspV TTCGAA 1 cut(s) 474
PaeI GCATGC 1 cut(s) 1171
PagI TCATGA 1 cut(s) 578
PcsI WCGNNNNNNNCGW 1 cut(s) 328
PctI GAATGC 1 cut(s) 108
PdiI GCCGGC 1 cut(s) 643
PdmI GAANNNNTTC 2 cut(s) 446, 1275
PfeI GAWTC 5 cut(s) 476, 899, 977, 995, 1282
PflFI GACNNNGTC 1 cut(s) 30
PflMI CCANNNNNTGG 2 cut(s) 890, 1039
PkrI GCNGC 3 cut(s) 289, 879, 1047
Psp124BI GAGCTC 1 cut(s) 839
Psp1406I AACGTT 1 cut(s) 1351
PspN4I GGNNCC 3 cut(s) 909, 1255, 1272
PspPI GGNCC 3 cut(s) 32, 172, 736
PsyI GACNNNGTC 1 cut(s) 30
RruI TCGCGA 1 cut(s) 455
RsaI GTAC 3 cut(s) 120, 571, 1066
RsaNI GTAC 3 cut(s) 119, 570, 1065
RseI CAYNNNNRTG 4 cut(s) 577, 591, 946, 1011
SacI GAGCTC 1 cut(s) 839
SaqAI TTAA 5 cut(s) 353, 422, 605, 668, 1346
SatI GCNGC 3 cut(s) 288, 878, 1046
Sau3AI GATC 1 cut(s) 123
Sau96I GGNCC 3 cut(s) 32, 172, 736
SduI GDGCHC 3 cut(s) 93, 705, 839
SfaNI GCATC 3 cut(s) 150, 278, 419
SfcI CTRYAG 1 cut(s) 1085
SfuI TTCGAA 1 cut(s) 474
SinI GGWCC 2 cut(s) 32, 736
SmiMI CAYNNNNRTG 4 cut(s) 577, 591, 946, 1011
SmlI CTYRAG 2 cut(s) 598, 1094
SmoI CTYRAG 2 cut(s) 598, 1094
SphI GCATGC 1 cut(s) 1171
Sse9I AATT 9 cut(s) 18, 40, 334, 360, 470, 981, 1208, 1299, 1343
SsiI CCGC 3 cut(s) 79, 143, 927
SspI AATATT 1 cut(s) 743
SspMI CTAG 5 cut(s) 523, 545, 709, 872, 1374
SstI GAGCTC 1 cut(s) 839
StyI CCWWGG 3 cut(s) 276, 884, 903
TaaI ACNGT 7 cut(s) 136, 151, 620, 822, 1086, 1137, 1161
TaiI ACGT 2 cut(s) 120, 1354
TaqI TCGA 2 cut(s) 474, 1069
TasI AATT 9 cut(s) 18, 40, 334, 360, 470, 981, 1208, 1299, 1343
TfiI GAWTC 5 cut(s) 476, 899, 977, 995, 1282
Tru1I TTAA 5 cut(s) 353, 422, 605, 668, 1346
Tru9I TTAA 5 cut(s) 353, 422, 605, 668, 1346
TscAI CASTG 4 cut(s) 235, 625, 971, 1146
TseFI GTSAC 1 cut(s) 1137
TseI GCWGC 3 cut(s) 287, 877, 1045
Tsp45I GTSAC 1 cut(s) 1137
TspDTI ATGAA 4 cut(s) 251, 930, 1088, 1140
TspRI CASTG 4 cut(s) 235, 625, 971, 1146
Tth111I GACNNNGTC 1 cut(s) 30
Van91I CCANNNNNTGG 2 cut(s) 890, 1039
VpaK11BI GGWCC 2 cut(s) 32, 736
XapI RAATTY 4 cut(s) 40, 334, 360, 1299
XceI RCATGY 1 cut(s) 1171
XcmI CCANNNNNNNNNTGG 1 cut(s) 1264
XmnI GAANNNNTTC 2 cut(s) 446, 1275
XspI CTAG 5 cut(s) 523, 545, 709, 872, 1374
Zsp2I ATGCAT 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.