Rw1G038040

S-type anion channel

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
65629678 .. 65634641
4964 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G038040.1

Sequence Viewer

Length: 1770 bp
ATGGTTGAACTGTCTTCAACACTTTTCAGCTGCAAACTTTTAGTGATCGAAAACAGGAAAACCATGGGGTCTGAAGAACATGTTTGCCTTCAAATTCCATCTCCTATCAAATACATATCATCAAATGAAGTGGTTCGGTTTGATAACAAAACTGAGATGGCTGCTATGATATCTCTTAGCATGCCACCATCACCAACGGATATTCAGTTACAGAACACAAAACAAGTGCCCTTCAGCCCTGAAACAAATTTCAACAATGGAATTCCAGATTCTAATTCTGCCGCAACTAAGCGTGCTAGTAGCAGCCAACTACCGGAAGAAGCAGAATTTCACTCTCAGCCCCAGTCAAAAATCTCTGCATTTGAAGATCAAGCAATTCAAATAGGGCATTGTCCTTATCAACCAAGTATTGAAAGATTGAATAAGAGGTTTGATAATTTCAAGACATGGTCTGGGAAACTTGAAAGGCAGATATCACTAGCTTCACTACTACGGGGAAAGACACCAAGAAAAAGTGATCAACCAGAGAATGCTTCTGTGCAAAGTACAGATCAAGTTGACCCTTTACCTGCAGACAGATACTTTGATGCATTGGAAGGGCCTGAGTTGGACACCCTTAGGGCTTCAGAGGAAATTCTGCTTCCAGAAGATAAGAAGTGGCCATTTCTTCTCCGGTATCCCATTTCTTCATTTAGCATCTGTCTTGGTGTTAGCAGCCAAGCTATTTTGTGGAAAACCCTGCCTCTCTCTGCCTCCACAAAATTTCTCCACTTGAGCTTAACACCAAATTTGGTTCTCTGGTTCATTTCTCTTGCTCTATTAGTTATTGTTGCTTGCATCTACATTCTTAAAATCATCTTCTACTTTGAAGCAGTTCGTCGTGAGTATTACCATCCAATCCGAATCAACTTCTTCTTTTCCCCATTTATAGCCCTCTTGTTCACAGCTCTTGAAGTCCCACCTTCAATTTCTAACAACCTCCATCCAGCTCTTTGGTACATCCTCATGGCACCAATTCTATGTCTTGAGCTTAAAATCTATGGGCAGTGGATGTCAGGAGGCGACCGCCGGCTCTCAAAGGTGGCGAATCCTGTGAACCATCTCTCTATTGTTGGCAACTTTGTTGGGGCATTGCTAGGAGCATCAATGGGACTAAAAGAAGGACCAATATTCTTTTTTGCTGTTGGGTTGGCTCACTACACGGTCTTATTTGTAACTTTACTACCAACAAATGAGTCAGTAATCCCAAAGGAACTCCATCCTGTGTTCTTTCTGTTTGTTGCAGCACCTAGCGTAGCTTCAATGGCATGGACAAGAATCCAAGGCTCCTTTGATTATGGCTCGCGGATTAGTTACTTCATCGCCATGTTCCTTTACCTCTCATTGGCAAGTAGTCCGAGTCAATTTTTTCGAGGATTCAAGTTCTCACTGGCATGGTGGGCATACACTTTCCCAGTGACCGGTGCTGCCATTGCAACCATCAGGTACTCGAATGAAGTGACGAATGTAGCAACTCAAGCTTTGGCTGTCATACTCTCTCTCCTTGCCACGCTCACAGTCATGGCTCTCTTCATAGTAACCCTATTGCATGCCTTTGTGCTCCGAGACCTCTTCCCCAATGACATTCCAATTGCCATTAGTGACAGAAACCCAAATAAACCACACAGAAAGTGGTTCCAATTAAAGCAGGAAAGCTCTTCGTATCCCAAAGAGATTGAGAATTCCTTGAAGTCAACAACAGGCTCAGATAAAAAGGATTTGGAAATTTGA

Protein Analysis

589

Amino Acids

66.13

Weight (kDa)

8.07

Isoelectric Point (pI)

47.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SLAC1 PF03595 226 - 528 1.2e-40 Voltage-dependent anion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 577
AccB1I GGYRCC 1 cut(s) 1009
AccII CGCG 1 cut(s) 1345
AciI CCGC 3 cut(s) 282, 1066, 1345
AcoI YGGCCR 1 cut(s) 659
AcsI RAATTY 9 cut(s) 93, 247, 261, 326, 633, 761, 787, 1720, 1764
AcuI CTGAAG 3 cut(s) 93, 217, 609
AfaI GTAC 3 cut(s) 547, 998, 1487
AfiI CCNNNNNNNGG 3 cut(s) 313, 1384, 1460
AflIII ACRYGT 1 cut(s) 79
AgeI ACCGGT 1 cut(s) 1460
Alw21I GWGCWC 1 cut(s) 1602
Alw26I GTCTC 1 cut(s) 1599
AoxI GGCC 2 cut(s) 599, 659
ApeKI GCWGC 6 cut(s) 30, 161, 303, 714, 1283, 1466
ApoI RAATTY 9 cut(s) 93, 247, 261, 326, 633, 761, 787, 1720, 1764
ArsI GACNNNNNNTTYG 2 cut(s) 566, 598
AsiGI ACCGGT 1 cut(s) 1460
Asp700I GAANNNNTTC 2 cut(s) 132, 873
AspS9I GGNCC 2 cut(s) 599, 1163
AsuHPI GGTGA 1 cut(s) 183
AvaII GGWCC 1 cut(s) 1163
AxyI CCTNAGG 1 cut(s) 617
BaeGI GKGCMC 1 cut(s) 231
BalI TGGCCA 1 cut(s) 661
BanI GGYRCC 1 cut(s) 1009
BbsI GAAGAC 1 cut(s) 6
Bbv12I GWGCWC 1 cut(s) 1602
BbvI GCAGC 6 cut(s) 17, 148, 315, 726, 1295, 1453
BccI CCATC 8 cut(s) 106, 151, 196, 900, 990, 1107, 1266, 1487
BciVI GTATCC 2 cut(s) 687, 1713
BclI TGATCA 1 cut(s) 517
BcoDI GTCTC 1 cut(s) 1599
BfaI CTAG 4 cut(s) 297, 479, 1136, 1290
BfmI CTRYAG 1 cut(s) 570
BfuAI ACCTGC 1 cut(s) 577
BfuI GTATCC 2 cut(s) 687, 1713
BisI GCNGC 7 cut(s) 31, 162, 282, 304, 715, 1284, 1467
BlsI GCNGC 7 cut(s) 32, 163, 283, 305, 716, 1285, 1468
Bme18I GGWCC 1 cut(s) 1163
BmgT120I GGNCC 2 cut(s) 599, 1163
BmiI GGNNCC 3 cut(s) 1011, 1327, 1676
BmrI ACTGGG 2 cut(s) 337, 1448
BmsI GCATC 4 cut(s) 577, 705, 846, 1151
BmuI ACTGGG 2 cut(s) 337, 1448
BpiI GAAGAC 1 cut(s) 6
BpuEI CTTGAG 3 cut(s) 793, 1046, 1500
BsaI GGTCTC 1 cut(s) 1599
BsaJI CCNNGG 2 cut(s) 63, 1321
BsaWI WCCGGW 3 cut(s) 313, 672, 1460
BsaXI ACNNNNNCTCC 2 cut(s) 1524, 1554
Bsc4I CCNNNNNNNGG 3 cut(s) 313, 1384, 1460
Bse118I RCCGGY 2 cut(s) 1068, 1460
Bse1I ACTGG 3 cut(s) 343, 1434, 1454
Bse21I CCTNAGG 1 cut(s) 617
Bse3DI GCAATG 2 cut(s) 1130, 1470
BseDI CCNNGG 2 cut(s) 63, 1321
BseGI GGATG 5 cut(s) 892, 982, 999, 1056, 1258
BseLI CCNNNNNNNGG 3 cut(s) 313, 1384, 1460
BseMI GCAATG 2 cut(s) 1130, 1470
BseMII CTCAG 4 cut(s) 144, 350, 594, 1758
BseNI ACTGG 3 cut(s) 343, 1434, 1454
BseSI GKGCMC 1 cut(s) 231
BseXI GCAGC 6 cut(s) 17, 148, 315, 726, 1295, 1453
Bsh1236I CGCG 1 cut(s) 1345
Bsh1285I CGRYCG 1 cut(s) 1066
BshFI GGCC 2 cut(s) 601, 661
BshNI GGYRCC 1 cut(s) 1009
BshTI ACCGGT 1 cut(s) 1460
BsiEI CGRYCG 1 cut(s) 1066
BsiHKAI GWGCWC 1 cut(s) 1602
BsiSI CCGG 4 cut(s) 314, 673, 1069, 1461
BslFI GGGAC 2 cut(s) 941, 1164
BslI CCNNNNNNNGG 3 cut(s) 313, 1384, 1460
BsmAI GTCTC 1 cut(s) 1599
BsmFI GGGAC 2 cut(s) 941, 1164
BsmI GAATGC 1 cut(s) 535
BsnI GGCC 2 cut(s) 601, 661
Bso31I GGTCTC 1 cut(s) 1599
Bsp1286I GDGCHC 2 cut(s) 231, 1602
Bsp143I GATC 4 cut(s) 45, 367, 517, 550
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 3 cut(s) 282, 1066, 1345
BspANI GGCC 2 cut(s) 601, 661
BspCNI CTCAG 4 cut(s) 145, 349, 595, 1757
BspFNI CGCG 1 cut(s) 1345
BspLI GGNNCC 3 cut(s) 1011, 1327, 1676
BspMAI CTGCAG 1 cut(s) 574
BspMI ACCTGC 1 cut(s) 577
BspQI GCTCTTC 1 cut(s) 1702
BspT107I GGYRCC 1 cut(s) 1009
BspTNI GGTCTC 1 cut(s) 1599
BsrDI GCAATG 2 cut(s) 1130, 1470
BsrFI RCCGGY 2 cut(s) 1068, 1460
BsrI ACTGG 3 cut(s) 343, 1434, 1454
BssAI RCCGGY 2 cut(s) 1068, 1460
BssECI CCNNGG 2 cut(s) 63, 1321
BssMI GATC 4 cut(s) 45, 367, 517, 550
BssT1I CCWWGG 2 cut(s) 63, 1321
Bst4CI ACNGT 3 cut(s) 12, 1204, 1558
Bst6I CTCTTC 3 cut(s) 1574, 1616, 1702
BstC8I GCNNGC 6 cut(s) 182, 294, 835, 1070, 1343, 1590
BstDEI CTNAG 7 cut(s) 153, 176, 288, 336, 603, 617, 1744
BstDSI CCRYGG 1 cut(s) 63
BstF5I GGATG 5 cut(s) 892, 982, 999, 1056, 1258
BstFNI CGCG 1 cut(s) 1345
BstKTI GATC 4 cut(s) 48, 370, 520, 553
BstMAI GTCTC 1 cut(s) 1599
BstMBI GATC 4 cut(s) 45, 367, 517, 550
BstMCI CGRYCG 1 cut(s) 1066
BstMWI GCNNNNNNNGC 4 cut(s) 1304, 1439, 1472, 1517
BstNSI RCATGY 3 cut(s) 83, 184, 1592
BstSFI CTRYAG 1 cut(s) 570
BstSLI GKGCMC 1 cut(s) 231
BstUI CGCG 1 cut(s) 1345
BstV1I GCAGC 6 cut(s) 17, 148, 315, 726, 1295, 1453
BstV2I GAAGAC 1 cut(s) 6
BstXI CCANNNNNNTGG 1 cut(s) 993
Bsu36I CCTNAGG 1 cut(s) 617
BsuI GTATCC 2 cut(s) 687, 1713
BsuRI GGCC 2 cut(s) 601, 661
BtgI CCRYGG 1 cut(s) 63
BtgZI GCGATG 1 cut(s) 1345
BtsCI GGATG 5 cut(s) 892, 982, 999, 1056, 1258
BtsI GCAGTG 1 cut(s) 1052
BtsIMutI CAGTG 3 cut(s) 1052, 1427, 1461
BveI ACCTGC 1 cut(s) 577
Cac8I GCNNGC 6 cut(s) 182, 294, 835, 1070, 1343, 1590
Cfr10I RCCGGY 2 cut(s) 1068, 1460
Cfr13I GGNCC 2 cut(s) 599, 1163
Csp6I GTAC 3 cut(s) 546, 997, 1486
CspAI ACCGGT 1 cut(s) 1460
CspCI CAANNNNNGTGG 2 cut(s) 111, 146
CviQI GTAC 3 cut(s) 546, 997, 1486
DdeI CTNAG 7 cut(s) 153, 176, 288, 336, 603, 617, 1744
DpnI GATC 4 cut(s) 47, 369, 519, 552
DpnII GATC 4 cut(s) 45, 367, 517, 550
EaeI YGGCCR 1 cut(s) 659
Eam1104I CTCTTC 3 cut(s) 1574, 1616, 1702
EarI CTCTTC 3 cut(s) 1574, 1616, 1702
Eco130I CCWWGG 2 cut(s) 63, 1321
Eco31I GGTCTC 1 cut(s) 1599
Eco32I GATATC 2 cut(s) 171, 474
Eco47I GGWCC 1 cut(s) 1163
Eco57I CTGAAG 3 cut(s) 93, 217, 609
Eco81I CCTNAGG 1 cut(s) 617
EcoO109I RGGNCCY 1 cut(s) 599
EcoRI GAATTC 2 cut(s) 261, 1720
EcoRV GATATC 2 cut(s) 171, 474
EcoT14I CCWWGG 2 cut(s) 63, 1321
EcoT22I ATGCAT 1 cut(s) 592
ErhI CCWWGG 2 cut(s) 63, 1321
FaqI GGGAC 2 cut(s) 941, 1164
FbaI TGATCA 1 cut(s) 517
Fnu4HI GCNGC 7 cut(s) 31, 162, 282, 304, 715, 1284, 1467
FokI GGATG 5 cut(s) 879, 969, 986, 1063, 1245
Fsp4HI GCNGC 7 cut(s) 31, 162, 282, 304, 715, 1284, 1467
FspBI CTAG 4 cut(s) 297, 479, 1136, 1290
GluI GCNGC 7 cut(s) 31, 162, 282, 304, 715, 1284, 1467
HaeIII GGCC 2 cut(s) 601, 661
HapII CCGG 4 cut(s) 314, 673, 1069, 1461
HincII GTYRAC 2 cut(s) 559, 1734
HindII GTYRAC 2 cut(s) 559, 1734
HindIII AAGCTT 1 cut(s) 1518
HinfI GANTC 7 cut(s) 269, 903, 1087, 1235, 1317, 1399, 1416
HpaII CCGG 4 cut(s) 314, 673, 1069, 1461
HphI GGTGA 1 cut(s) 183
Hpy166II GTNNAC 4 cut(s) 559, 942, 1096, 1734
Hpy188I TCNGA 6 cut(s) 73, 628, 902, 1398, 1604, 1747
Hpy188III TCNNGA 7 cut(s) 266, 442, 644, 881, 950, 1025, 1056
Hpy8I GTNNAC 4 cut(s) 559, 942, 1096, 1734
Hpy99I CGWCG 1 cut(s) 882
HpyAV CCTTC 5 cut(s) 98, 241, 590, 972, 1154
HpyCH4III ACNGT 3 cut(s) 12, 1204, 1558
HpyCH4V TGCA 9 cut(s) 33, 359, 541, 572, 590, 837, 1283, 1475, 1588
HpyF10VI GCNNNNNNNGC 4 cut(s) 1304, 1439, 1472, 1517
HpyF3I CTNAG 7 cut(s) 153, 176, 288, 336, 603, 617, 1744
KroI GCCGGC 1 cut(s) 1068
KroNI GCCGGC 1 cut(s) 1070
Ksp22I TGATCA 1 cut(s) 517
Kzo9I GATC 4 cut(s) 45, 367, 517, 550
LguI GCTCTTC 1 cut(s) 1702
LmnI GCTCC 3 cut(s) 1139, 1331, 1605
Lsp1109I GCAGC 6 cut(s) 17, 148, 315, 726, 1295, 1453
LweI GCATC 4 cut(s) 577, 705, 846, 1151
MaeI CTAG 4 cut(s) 297, 479, 1136, 1290
MaeIII GTNAC 7 cut(s) 207, 1213, 1352, 1456, 1498, 1576, 1640
MalI GATC 4 cut(s) 47, 369, 519, 552
MboI GATC 4 cut(s) 45, 367, 517, 550
MfeI CAATTG 1 cut(s) 1629
MhlI GDGCHC 2 cut(s) 231, 1602
MlsI TGGCCA 1 cut(s) 661
MluNI TGGCCA 1 cut(s) 661
MlyI GAGTC 2 cut(s) 1244, 1408
MmeI TCCRAC 1 cut(s) 588
Mox20I TGGCCA 1 cut(s) 661
Mph1103I ATGCAT 1 cut(s) 592
MroNI GCCGGC 1 cut(s) 1068
MroXI GAANNNNTTC 2 cut(s) 132, 873
MscI TGGCCA 1 cut(s) 661
MseI TTAA 4 cut(s) 779, 849, 1032, 1682
MslI CAYNNNNRTG 4 cut(s) 1004, 1364, 1432, 1559
Msp20I TGGCCA 1 cut(s) 661
MspA1I CMGCKG 1 cut(s) 30
MspI CCGG 4 cut(s) 314, 673, 1069, 1461
MunI CAATTG 1 cut(s) 1629
Mva1269I GAATGC 1 cut(s) 535
MvnI CGCG 1 cut(s) 1345
MwoI GCNNNNNNNGC 4 cut(s) 1304, 1439, 1472, 1517
NaeI GCCGGC 1 cut(s) 1070
NcoI CCATGG 1 cut(s) 63
NdeII GATC 4 cut(s) 45, 367, 517, 550
NgoMIV GCCGGC 1 cut(s) 1068
NlaIV GGNNCC 3 cut(s) 1011, 1327, 1676
NmuCI GTSAC 3 cut(s) 1456, 1498, 1640
NsiI ATGCAT 1 cut(s) 592
NspI RCATGY 3 cut(s) 83, 184, 1592
PaeI GCATGC 2 cut(s) 184, 1592
PciI ACATGT 1 cut(s) 79
PciSI GCTCTTC 1 cut(s) 1702
PctI GAATGC 1 cut(s) 535
PdiI GCCGGC 1 cut(s) 1070
PdmI GAANNNNTTC 2 cut(s) 132, 873
PfeI GAWTC 5 cut(s) 269, 903, 1087, 1317, 1416
PflFI GACNNNGTC 1 cut(s) 448
PinAI ACCGGT 1 cut(s) 1460
PkrI GCNGC 7 cut(s) 32, 163, 283, 305, 716, 1285, 1468
PleI GAGTC 2 cut(s) 1243, 1407
PpsI GAGTC 2 cut(s) 1243, 1407
PscI ACATGT 1 cut(s) 79
PspN4I GGNNCC 3 cut(s) 1011, 1327, 1676
PspPI GGNCC 2 cut(s) 599, 1163
PstI CTGCAG 1 cut(s) 574
PsyI GACNNNGTC 1 cut(s) 448
PvuII CAGCTG 1 cut(s) 30
RsaI GTAC 3 cut(s) 547, 998, 1487
RsaNI GTAC 3 cut(s) 546, 997, 1486
RseI CAYNNNNRTG 4 cut(s) 1004, 1364, 1432, 1559
SapI GCTCTTC 1 cut(s) 1702
SaqAI TTAA 4 cut(s) 779, 849, 1032, 1682
SatI GCNGC 7 cut(s) 31, 162, 282, 304, 715, 1284, 1467
Sau3AI GATC 4 cut(s) 45, 367, 517, 550
Sau96I GGNCC 2 cut(s) 599, 1163
SchI GAGTC 2 cut(s) 1244, 1408
SduI GDGCHC 2 cut(s) 231, 1602
SfaNI GCATC 4 cut(s) 577, 705, 846, 1151
SfcI CTRYAG 1 cut(s) 570
SinI GGWCC 1 cut(s) 1163
SmiMI CAYNNNNRTG 4 cut(s) 1004, 1364, 1432, 1559
SmlI CTYRAG 3 cut(s) 772, 1025, 1515
SmoI CTYRAG 3 cut(s) 772, 1025, 1515
SphI GCATGC 2 cut(s) 184, 1592
SsiI CCGC 3 cut(s) 282, 1066, 1345
SspI AATATT 1 cut(s) 1170
SspMI CTAG 4 cut(s) 297, 479, 1136, 1290
StyI CCWWGG 2 cut(s) 63, 1321
TaaI ACNGT 3 cut(s) 12, 1204, 1558
TaqI TCGA 3 cut(s) 48, 1411, 1490
TatI WGTACW 1 cut(s) 545
TauI GCSGC 1 cut(s) 284
TfiI GAWTC 5 cut(s) 269, 903, 1087, 1317, 1416
Tru1I TTAA 4 cut(s) 779, 849, 1032, 1682
Tru9I TTAA 4 cut(s) 779, 849, 1032, 1682
TscAI CASTG 3 cut(s) 1052, 1434, 1461
TseFI GTSAC 3 cut(s) 1456, 1498, 1640
TseI GCWGC 6 cut(s) 30, 161, 303, 714, 1283, 1466
Tsp45I GTSAC 3 cut(s) 1456, 1498, 1640
TspDTI ATGAA 6 cut(s) 141, 678, 793, 1348, 1509, 1561
TspGWI ACGGA 1 cut(s) 212
TspRI CASTG 3 cut(s) 1052, 1434, 1461
Tth111I GACNNNGTC 1 cut(s) 448
VpaK11BI GGWCC 1 cut(s) 1163
XapI RAATTY 9 cut(s) 93, 247, 261, 326, 633, 761, 787, 1720, 1764
XceI RCATGY 3 cut(s) 83, 184, 1592
XcmI CCANNNNNNNNNTGG 1 cut(s) 1668
XmnI GAANNNNTTC 2 cut(s) 132, 873
XspI CTAG 4 cut(s) 297, 479, 1136, 1290
Zsp2I ATGCAT 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.