Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000966

Physical Location & Seq

Genomic Coordinates Forward (+)

65681162 .. 65684672

Gene Structure 3511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G038070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGGGGTCTGAAGAACATGTTTGCCTTCAAATTCCATCTCCTATCAAATACATATCATCAAATGAAGTGGTTCGGTTTGATAACGTTAAGGAGCATACCTTTTTCAATGACAAGCATCAGCTAACTGACCCATCAGCTAAGAAAACTGGGATGGCTGCTATGATATCTCTTAGGATGCCACCATCGCCAGCGGAAATTCAGTTACAGAACACAAAACAAGTGCCCTTCAGCCCTGAAACAAATTTCAACAATGGAATTCCAGATTCTAATTCTGCCGCAACTAAGCGTGCTAGTAGCAGCCAACTACCGGAAGAAGCAGAATTTCACTCTCAGGCCCAGTCAAAAATCTCTGCATTTGAAGATCAAGCAATTCAAATAGGGCATTGTCCTTATCAACCAAGTATTGAAAGATTGAAAGATAAGAGGTTTGATAATTTCAAGACATGGTCTGGGAAACTTGAAAGGCAGATATCACTAGCTTCACTACTACGGGGAAAGCCACCAAGAAAAAGTGATCAACCAGAGAATGCTTCTGTGCAAAGTACAGATCAAGTTGACCCTTTACCTGCAGACAGATACTTTGATGCATTGGAAGGGCCTGAGTTGGACACCCTTAGGGCTTCAGAGGAAATTCTGCTTCCAGAAGATAAGAAGTGGCCATTTCTTCTCCGGTATCCCATTTCTTCATTTAGCATCTGTCTTGGTGTTAGCAGCCAAGCTATTTTGTGGAAAACCCTGCCTATCTCTGCCTCCACAAAATTTCTCCACTTGAGCTTAACACCAAATTTGGTTCTCTGGTTCATTTCTCTTGCTCTATTAGTTATTGTTGCTTGCATCTACATTCTTAAAATCATCTTCTACTTTGAAGCAGTTCGTCGTGAGTATTACCATCCAATCCGAATCAACTTCTTCTTTTCCCCATTTATAGCCCTTTTGTTCACAGCTCTTGGAGTCCCACCTTCAATTTCTAACAACCTCCATCCAGCTCTTTGGTACATCCTCATGGCACCAATTCTATGTCTTGAGCTTAAAATCTATGGGCAGTGGATGTCAGGAGGCGACCGCCGGCTCTCAAAGGTGGCGAATCCTGTGAACCATCTCTCTATTGTTGGCAACTTTGTTGGGGCATTGCTAGGAGCATCAATGGGACTAAAAGAAGGACCAATATTCTTTTTTGCTGTTGGGTTGGCTCACTACACGGTCTTATTTGTAACTTTGTACCAGAGACTACCAACAAATGAGTCAGTAATCCCAAAGGAACTCCATCCTGTGTTCTTTCTGTTTGTTGCAGCACCTAGCGTAGCTTCAATGGCATGGGCAAGAATCCAAGGCTCCTTCGATTATGGCTCACGGATTAGTTACTTCATCGCCATGTTCCTTTATCTCTCATTGGCAAGTATACATAAGCTGCATGCACTATTTATGTTGCAGTACTTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0006873 GO:0006950 GO:0006970 GO:0008150 GO:0008308 GO:0008509 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0015075 GO:0015103 GO:0015267 GO:0015318 GO:0015698 GO:0016020 GO:0019725 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0034220 GO:0042221 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071944 GO:0098656 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLAC1

Protein Analysis

480

Amino Acids

54.09

Weight (kDa)

8.42

Isoelectric Point (pI)

48.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SLAC1	PF03595	225 - 465	4.4e-32	Voltage-dependent anion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27970 AT4G27970 AT4G27970 AT4G27970 AT4G27970 AT4G27970 AT5G24030 AT5G24030
fragaria_vesca	FvH4_7g30630 FvH4_7g30630 FvH4_7g30630 FvH4_7g30640 FvH4_7g30640 FvH4_7g30640 FvH4_7g30640
malus_domestica	MD01G1211400.v1.1 MD01G1211500.v1.1 MD07G1282100.v1.1
prunus_persica	Prupe.2G291700_v2.0.a1 Prupe.2G304200_v2.0.a1 Prupe.2G304300_v2.0.a1 Prupe.2G304300_v2.0.a1 Prupe.2G304300_v2.0.a1
pyrus_communis	pycom01g22190 pycom01g22200 pycom07g25600
rosa_chinensis	RchiOBHm_Chr1g0369441 RchiOBHm_Chr1g0379541 RchiOBHm_Chr1g0379571
rosa_laevigata	RLG00000026393 RLG00000026394 RLG00000027130
rosa_multiflora	Rmu_co8329679.1_g000001 Rmu_sc0000402.1_g000002 Rmu_sc0000402.1_g000005 Rmu_sc0001985.1_g000002 Rmu_sc0003612.1_g000018 Rmu_sc0024534.1_g000001
rosa_roxburghii	Rroxscaffold_4G00280080 Rroxscaffold_4G00280090 Rroxscaffold_4G00287650
rosa_rugosa	Rorug01G0350200 Rorug01G0350200 Rorug01G0413000
rosa_samantha	Rh1AG357900 Rh1AG435500 Rh1AG435600 Rh1BG322000 Rh1BG393100 Rh1BG393200 Rh1CG335700 Rh1CG405800 Rh1CG405900 Rh1DG352600 Rh1DG423900 Rh1DG424000
rosa_wichuraiana	Rw0G019950 Rw1G031570 Rw1G031580 Rw1G038040 Rw1G038050 Rw1G038070 Rw1G038080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	574
AccB1I	GGYRCC	1 cut(s)	1006
AccI	GTMKAC	1 cut(s)	1399
AciI	CCGC	3 cut(s)	191, 276, 1063
AclI	AACGTT	1 cut(s)	84
AcoI	YGGCCR	1 cut(s)	656
AcsI	RAATTY	8 cut(s)	30, 195, 241, 255, 320, 630, 758, 784
AcuI	CTGAAG	3 cut(s)	30, 211, 606
AfaI	GTAC	4 cut(s)	544, 995, 1220, 1433
AfiI	CCNNNNNNNGG	1 cut(s)	307
AflIII	ACRYGT	1 cut(s)	16
Alw26I	GTCTC	1 cut(s)	1219
AoxI	GGCC	3 cut(s)	333, 596, 656
ApeKI	GCWGC	5 cut(s)	155, 297, 711, 1289, 1408
ApoI	RAATTY	8 cut(s)	30, 195, 241, 255, 320, 630, 758, 784
ArsI	GACNNNNNNTTYG	2 cut(s)	563, 595
Asp700I	GAANNNNTTC	2 cut(s)	69, 870
AspS9I	GGNCC	3 cut(s)	334, 596, 1160
AvaII	GGWCC	1 cut(s)	1160
AxyI	CCTNAGG	1 cut(s)	614
BaeGI	GKGCMC	1 cut(s)	225
BalI	TGGCCA	1 cut(s)	658
BanI	GGYRCC	1 cut(s)	1006
BbvI	GCAGC	5 cut(s)	142, 309, 723, 1301, 1395
BccI	CCATC	8 cut(s)	43, 139, 145, 190, 897, 987, 1104, 1272
BciVI	GTATCC	1 cut(s)	684
BclI	TGATCA	1 cut(s)	514
BcoDI	GTCTC	1 cut(s)	1219
BfaI	CTAG	4 cut(s)	291, 476, 1133, 1296
BfmI	CTRYAG	1 cut(s)	567
BfuAI	ACCTGC	1 cut(s)	574
BfuI	GTATCC	1 cut(s)	684
BisI	GCNGC	6 cut(s)	156, 276, 298, 712, 1290, 1409
BlsI	GCNGC	6 cut(s)	157, 277, 299, 713, 1291, 1410
BmcAI	AGTACT	1 cut(s)	1433
Bme18I	GGWCC	1 cut(s)	1160
BmgT120I	GGNCC	3 cut(s)	334, 596, 1160
BmiI	GGNNCC	2 cut(s)	1008, 1333
BmrI	ACTGGG	2 cut(s)	156, 331
BmsI	GCATC	6 cut(s)	124, 165, 574, 702, 843, 1148
BmuI	ACTGGG	2 cut(s)	156, 331
BpuEI	CTTGAG	2 cut(s)	790, 1043
BsaJI	CCNNGG	1 cut(s)	1327
BsaWI	WCCGGW	2 cut(s)	307, 669
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
Bse118I	RCCGGY	1 cut(s)	1065
Bse1I	ACTGG	2 cut(s)	151, 337
Bse21I	CCTNAGG	1 cut(s)	614
Bse3DI	GCAATG	1 cut(s)	1127
BseDI	CCNNGG	1 cut(s)	1327
BseGI	GGATG	7 cut(s)	156, 180, 889, 979, 996, 1053, 1264
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseMI	GCAATG	1 cut(s)	1127
BseMII	CTCAG	2 cut(s)	344, 591
BseNI	ACTGG	2 cut(s)	151, 337
BseSI	GKGCMC	1 cut(s)	225
BseXI	GCAGC	5 cut(s)	142, 309, 723, 1301, 1395
Bsh1285I	CGRYCG	1 cut(s)	1063
BshFI	GGCC	3 cut(s)	335, 598, 658
BshNI	GGYRCC	1 cut(s)	1006
BsiEI	CGRYCG	1 cut(s)	1063
BsiSI	CCGG	3 cut(s)	308, 670, 1066
BslFI	GGGAC	2 cut(s)	938, 1161
BslI	CCNNNNNNNGG	1 cut(s)	307
BsmAI	GTCTC	1 cut(s)	1219
BsmFI	GGGAC	2 cut(s)	938, 1161
BsmI	GAATGC	1 cut(s)	532
BsnI	GGCC	3 cut(s)	335, 598, 658
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	3 cut(s)	361, 514, 547
BspACI	CCGC	3 cut(s)	191, 276, 1063
BspANI	GGCC	3 cut(s)	335, 598, 658
BspCNI	CTCAG	2 cut(s)	343, 592
BspLI	GGNNCC	2 cut(s)	1008, 1333
BspMAI	CTGCAG	1 cut(s)	571
BspMI	ACCTGC	1 cut(s)	574
BspT107I	GGYRCC	1 cut(s)	1006
BsrDI	GCAATG	1 cut(s)	1127
BsrFI	RCCGGY	1 cut(s)	1065
BsrI	ACTGG	2 cut(s)	151, 337
BssAI	RCCGGY	1 cut(s)	1065
BssECI	CCNNGG	1 cut(s)	1327
BssMI	GATC	3 cut(s)	361, 514, 547
BssNAI	GTATAC	1 cut(s)	1400
BssT1I	CCWWGG	1 cut(s)	1327
Bst1107I	GTATAC	1 cut(s)	1400
Bst4CI	ACNGT	1 cut(s)	1201
BstC8I	GCNNGC	5 cut(s)	189, 288, 832, 1067, 1413
BstDEI	CTNAG	6 cut(s)	138, 170, 282, 330, 600, 614
BstF5I	GGATG	7 cut(s)	156, 180, 889, 979, 996, 1053, 1264
BstKTI	GATC	3 cut(s)	364, 517, 550
BstMAI	GTCTC	1 cut(s)	1219
BstMBI	GATC	3 cut(s)	361, 514, 547
BstMCI	CGRYCG	1 cut(s)	1063
BstMWI	GCNNNNNNNGC	2 cut(s)	184, 1310
BstNSI	RCATGY	2 cut(s)	20, 1415
BstSFI	CTRYAG	1 cut(s)	567
BstSLI	GKGCMC	1 cut(s)	225
BstV1I	GCAGC	5 cut(s)	142, 309, 723, 1301, 1395
BstXI	CCANNNNNNTGG	1 cut(s)	990
BstZ17I	GTATAC	1 cut(s)	1400
Bsu36I	CCTNAGG	1 cut(s)	614
BsuI	GTATCC	1 cut(s)	684
BsuRI	GGCC	3 cut(s)	335, 598, 658
BtgZI	GCGATG	2 cut(s)	168, 1351
BtsCI	GGATG	7 cut(s)	156, 180, 889, 979, 996, 1053, 1264
BtsI	GCAGTG	1 cut(s)	1049
BtsIMutI	CAGTG	1 cut(s)	1049
BveI	ACCTGC	1 cut(s)	574
Cac8I	GCNNGC	5 cut(s)	189, 288, 832, 1067, 1413
Cfr10I	RCCGGY	1 cut(s)	1065
Cfr13I	GGNCC	3 cut(s)	334, 596, 1160
Csp6I	GTAC	4 cut(s)	543, 994, 1219, 1432
CspCI	CAANNNNNGTGG	2 cut(s)	48, 83
CviAII	CATG	6 cut(s)	17, 444, 1003, 1314, 1372, 1412
CviQI	GTAC	4 cut(s)	543, 994, 1219, 1432
DdeI	CTNAG	6 cut(s)	138, 170, 282, 330, 600, 614
DpnI	GATC	3 cut(s)	363, 516, 549
DpnII	GATC	3 cut(s)	361, 514, 547
EaeI	YGGCCR	1 cut(s)	656
Eco130I	CCWWGG	1 cut(s)	1327
Eco32I	GATATC	2 cut(s)	165, 471
Eco47I	GGWCC	1 cut(s)	1160
Eco57I	CTGAAG	3 cut(s)	30, 211, 606
Eco81I	CCTNAGG	1 cut(s)	614
EcoO109I	RGGNCCY	1 cut(s)	596
EcoRI	GAATTC	1 cut(s)	255
EcoRV	GATATC	2 cut(s)	165, 471
EcoT14I	CCWWGG	1 cut(s)	1327
EcoT22I	ATGCAT	1 cut(s)	589
ErhI	CCWWGG	1 cut(s)	1327
FaeI	CATG	6 cut(s)	20, 447, 1006, 1317, 1375, 1415
FaqI	GGGAC	2 cut(s)	938, 1161
FatI	CATG	6 cut(s)	16, 443, 1002, 1313, 1371, 1411
FbaI	TGATCA	1 cut(s)	514
FblI	GTMKAC	1 cut(s)	1399
Fnu4HI	GCNGC	6 cut(s)	156, 276, 298, 712, 1290, 1409
FokI	GGATG	7 cut(s)	163, 187, 876, 966, 983, 1060, 1251
Fsp4HI	GCNGC	6 cut(s)	156, 276, 298, 712, 1290, 1409
FspBI	CTAG	4 cut(s)	291, 476, 1133, 1296
GluI	GCNGC	6 cut(s)	156, 276, 298, 712, 1290, 1409
HaeIII	GGCC	3 cut(s)	335, 598, 658
HapII	CCGG	3 cut(s)	308, 670, 1066
Hin1II	CATG	6 cut(s)	20, 447, 1006, 1317, 1375, 1415
HincII	GTYRAC	1 cut(s)	556
HindII	GTYRAC	1 cut(s)	556
HinfI	GANTC	6 cut(s)	263, 900, 951, 1084, 1241, 1323
HpaII	CCGG	3 cut(s)	308, 670, 1066
Hpy166II	GTNNAC	4 cut(s)	556, 939, 1093, 1400
Hpy188I	TCNGA	3 cut(s)	10, 625, 899
Hpy188III	TCNNGA	6 cut(s)	260, 439, 641, 878, 1022, 1053
Hpy8I	GTNNAC	4 cut(s)	556, 939, 1093, 1400
Hpy99I	CGWCG	1 cut(s)	879
HpyAV	CCTTC	6 cut(s)	35, 235, 587, 969, 1151, 1345
HpyCH4III	ACNGT	1 cut(s)	1201
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	9 cut(s)	353, 538, 569, 587, 834, 1289, 1411, 1415, 1429
HpyF10VI	GCNNNNNNNGC	2 cut(s)	184, 1310
HpyF3I	CTNAG	6 cut(s)	138, 170, 282, 330, 600, 614
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	6 cut(s)	20, 447, 1006, 1317, 1375, 1415
KroI	GCCGGC	1 cut(s)	1065
KroNI	GCCGGC	1 cut(s)	1067
Ksp22I	TGATCA	1 cut(s)	514
Kzo9I	GATC	3 cut(s)	361, 514, 547
LmnI	GCTCC	3 cut(s)	91, 1136, 1337
Lsp1109I	GCAGC	5 cut(s)	142, 309, 723, 1301, 1395
LweI	GCATC	6 cut(s)	124, 165, 574, 702, 843, 1148
MaeI	CTAG	4 cut(s)	291, 476, 1133, 1296
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	3 cut(s)	201, 1210, 1358
MalI	GATC	3 cut(s)	363, 516, 549
MboI	GATC	3 cut(s)	361, 514, 547
MboII	GAAGA	8 cut(s)	23, 323, 371, 656, 656, 675, 847, 901
MhlI	GDGCHC	1 cut(s)	225
MlsI	TGGCCA	1 cut(s)	658
MluNI	TGGCCA	1 cut(s)	658
MlyI	GAGTC	2 cut(s)	960, 1250
MmeI	TCCRAC	1 cut(s)	585
MnlI	CCTC	6 cut(s)	417, 619, 760, 986, 1010, 1049
Mox20I	TGGCCA	1 cut(s)	658
Mph1103I	ATGCAT	1 cut(s)	589
MroNI	GCCGGC	1 cut(s)	1065
MroXI	GAANNNNTTC	2 cut(s)	69, 870
MscI	TGGCCA	1 cut(s)	658
MseI	TTAA	4 cut(s)	87, 776, 846, 1029
MslI	CAYNNNNRTG	2 cut(s)	1001, 1370
Msp20I	TGGCCA	1 cut(s)	658
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	3 cut(s)	308, 670, 1066
Mva1269I	GAATGC	1 cut(s)	532
MwoI	GCNNNNNNNGC	2 cut(s)	184, 1310
NaeI	GCCGGC	1 cut(s)	1067
NdeII	GATC	3 cut(s)	361, 514, 547
NgoMIV	GCCGGC	1 cut(s)	1065
NlaIII	CATG	6 cut(s)	20, 447, 1006, 1317, 1375, 1415
NlaIV	GGNNCC	2 cut(s)	1008, 1333
NsiI	ATGCAT	1 cut(s)	589
NspI	RCATGY	2 cut(s)	20, 1415
PaeI	GCATGC	1 cut(s)	1415
PciI	ACATGT	1 cut(s)	16
PctI	GAATGC	1 cut(s)	532
PdiI	GCCGGC	1 cut(s)	1067
PdmI	GAANNNNTTC	2 cut(s)	69, 870
PfeI	GAWTC	4 cut(s)	263, 900, 1084, 1323
PflFI	GACNNNGTC	1 cut(s)	445
PkrI	GCNGC	6 cut(s)	157, 277, 299, 713, 1291, 1410
PleI	GAGTC	2 cut(s)	959, 1249
PpsI	GAGTC	2 cut(s)	959, 1249
PscI	ACATGT	1 cut(s)	16
Psp1406I	AACGTT	1 cut(s)	84
PspN4I	GGNNCC	2 cut(s)	1008, 1333
PspPI	GGNCC	3 cut(s)	334, 596, 1160
PstI	CTGCAG	1 cut(s)	571
PsyI	GACNNNGTC	1 cut(s)	445
RsaI	GTAC	4 cut(s)	544, 995, 1220, 1433
RsaNI	GTAC	4 cut(s)	543, 994, 1219, 1432
RseI	CAYNNNNRTG	2 cut(s)	1001, 1370
SaqAI	TTAA	4 cut(s)	87, 776, 846, 1029
SatI	GCNGC	6 cut(s)	156, 276, 298, 712, 1290, 1409
Sau3AI	GATC	3 cut(s)	361, 514, 547
Sau96I	GGNCC	3 cut(s)	334, 596, 1160
ScaI	AGTACT	1 cut(s)	1433
SchI	GAGTC	2 cut(s)	960, 1250
SduI	GDGCHC	1 cut(s)	225
SfaNI	GCATC	6 cut(s)	124, 165, 574, 702, 843, 1148
SfcI	CTRYAG	1 cut(s)	567
SinI	GGWCC	1 cut(s)	1160
SmiMI	CAYNNNNRTG	2 cut(s)	1001, 1370
SmlI	CTYRAG	2 cut(s)	769, 1022
SmoI	CTYRAG	2 cut(s)	769, 1022
SphI	GCATGC	1 cut(s)	1415
SsiI	CCGC	3 cut(s)	191, 276, 1063
SspI	AATATT	1 cut(s)	1167
SspMI	CTAG	4 cut(s)	291, 476, 1133, 1296
StyI	CCWWGG	1 cut(s)	1327
TaaI	ACNGT	1 cut(s)	1201
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	1 cut(s)	1338
TatI	WGTACW	2 cut(s)	542, 1431
TauI	GCSGC	1 cut(s)	278
TfiI	GAWTC	4 cut(s)	263, 900, 1084, 1323
Tru1I	TTAA	4 cut(s)	87, 776, 846, 1029
Tru9I	TTAA	4 cut(s)	87, 776, 846, 1029
TscAI	CASTG	1 cut(s)	1049
TseI	GCWGC	5 cut(s)	155, 297, 711, 1289, 1408
TspDTI	ATGAA	5 cut(s)	78, 675, 790, 1354, 1426
TspGWI	ACGGA	1 cut(s)	1366
TspRI	CASTG	1 cut(s)	1049
Tth111I	GACNNNGTC	1 cut(s)	445
VpaK11BI	GGWCC	1 cut(s)	1160
XapI	RAATTY	8 cut(s)	30, 195, 241, 255, 320, 630, 758, 784
XceI	RCATGY	2 cut(s)	20, 1415
XmiI	GTMKAC	1 cut(s)	1399
XmnI	GAANNNNTTC	2 cut(s)	69, 870
XspI	CTAG	4 cut(s)	291, 476, 1133, 1296
ZrmI	AGTACT	1 cut(s)	1433
Zsp2I	ATGCAT	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.