Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8329679.1

Orthogroup ID

OG0000966

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 972

Gene Structure 972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8329679.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

cccagtcaaaaatctctgcatttgaagatcaagcaattcaaatagggcattgtccttatcaaccaagtattgaaagattgaaagataagaggtttgataatttcaagacatggtctgggaaacttgaaaggcagatatcactagcttcactactacggggaaagccaccaagaaaaagtgatcaaccagagaatgcttctgtgcaaagtacagatcaagttgaccctttacctgcagacagatactttgatgcattggaagggcctgagttggacacccttagggcttcagaggaaattctgcttccagaagataagaagtggccatttcttctccggtatcccatttcttcatttagcatctgtcttggtgttagcagccaagctattttgtggaaaaccctgcctatctctgcctccacaaaatttctccacttgagcttaacaccaaatttggttctctggttcatttctcttgctctattagttattgttgcttgcatctacattcttaaaatcatcttctactttgaagcagttcgtcgtgagtattaccatccaatccgaatcaacttcttcttttccccatttatagccctcttgttcacagctcttgaagtcccaccttcaatttctaacaacctccatccagctctttggtacatcctcatggcaccaattctatgtcttgagcttaaaatctatgggcagtggatgtcaggaggcgaccgccggctctcaaaggtggcgaatcctgtgaaccatctctctattgttggcaactttgttggggcattgctaggagcatcaatgggactaaaagaaggaccaatattcttttttgctgttgggttggctcactacacggtcttatttgtaactttgt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0006873 GO:0006950 GO:0006970 GO:0008150 GO:0008308 GO:0008509 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0015075 GO:0015103 GO:0015267 GO:0015318 GO:0015698 GO:0016020 GO:0019725 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0034220 GO:0042221 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071944 GO:0098656 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLAC1

Protein Analysis

294

Amino Acids

33.25

Weight (kDa)

8.6

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27970 AT4G27970 AT4G27970 AT4G27970 AT4G27970 AT4G27970 AT5G24030 AT5G24030
fragaria_vesca	FvH4_7g30630 FvH4_7g30630 FvH4_7g30630 FvH4_7g30640 FvH4_7g30640 FvH4_7g30640 FvH4_7g30640
malus_domestica	MD01G1211400.v1.1 MD01G1211500.v1.1 MD07G1282100.v1.1
prunus_persica	Prupe.2G291700_v2.0.a1 Prupe.2G304200_v2.0.a1 Prupe.2G304300_v2.0.a1 Prupe.2G304300_v2.0.a1 Prupe.2G304300_v2.0.a1
pyrus_communis	pycom01g22190 pycom01g22200 pycom07g25600
rosa_chinensis	RchiOBHm_Chr1g0369441 RchiOBHm_Chr1g0379541 RchiOBHm_Chr1g0379571
rosa_laevigata	RLG00000026393 RLG00000026394 RLG00000027130
rosa_multiflora	Rmu_co8329679.1_g000001 Rmu_sc0000402.1_g000002 Rmu_sc0000402.1_g000005 Rmu_sc0001985.1_g000002 Rmu_sc0003612.1_g000018 Rmu_sc0024534.1_g000001
rosa_roxburghii	Rroxscaffold_4G00280080 Rroxscaffold_4G00280090 Rroxscaffold_4G00287650
rosa_rugosa	Rorug01G0350200 Rorug01G0350200 Rorug01G0413000
rosa_samantha	Rh1AG357900 Rh1AG435500 Rh1AG435600 Rh1BG322000 Rh1BG393100 Rh1BG393200 Rh1CG335700 Rh1CG405800 Rh1CG405900 Rh1DG352600 Rh1DG423900 Rh1DG424000
rosa_wichuraiana	Rw0G019950 Rw1G031570 Rw1G031580 Rw1G038040 Rw1G038050 Rw1G038070 Rw1G038080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	240
AccB1I	GGYRCC	1 cut(s)	672
AciI	CCGC	1 cut(s)	729
AcoI	YGGCCR	1 cut(s)	322
AcsI	RAATTY	3 cut(s)	296, 424, 450
AcuI	CTGAAG	1 cut(s)	272
AfaI	GTAC	2 cut(s)	210, 661
AgsI	TTSAA	9 cut(s)	25, 40, 73, 81, 105, 127, 532, 616, 629
AluBI	AGCT	6 cut(s)	145, 385, 440, 610, 652, 693
AluI	AGCT	6 cut(s)	145, 385, 440, 610, 652, 693
AoxI	GGCC	2 cut(s)	262, 322
ApeKI	GCWGC	1 cut(s)	377
ApoI	RAATTY	3 cut(s)	296, 424, 450
ArsI	GACNNNNNNTTYG	2 cut(s)	229, 261
Asp700I	GAANNNNTTC	1 cut(s)	536
AspS9I	GGNCC	2 cut(s)	262, 826
AvaII	GGWCC	1 cut(s)	826
AxyI	CCTNAGG	1 cut(s)	280
BalI	TGGCCA	1 cut(s)	324
BanI	GGYRCC	1 cut(s)	672
BbvI	GCAGC	1 cut(s)	389
BccI	CCATC	3 cut(s)	563, 653, 770
BciVI	GTATCC	1 cut(s)	350
BclI	TGATCA	1 cut(s)	180
BfaI	CTAG	2 cut(s)	142, 799
BfmI	CTRYAG	1 cut(s)	233
BfuAI	ACCTGC	1 cut(s)	240
BfuI	GTATCC	1 cut(s)	350
BisI	GCNGC	1 cut(s)	378
BlsI	GCNGC	1 cut(s)	379
Bme18I	GGWCC	1 cut(s)	826
BmgT120I	GGNCC	2 cut(s)	262, 826
BmiI	GGNNCC	1 cut(s)	674
BmsI	GCATC	4 cut(s)	240, 368, 509, 814
BpuEI	CTTGAG	2 cut(s)	456, 709
BsaWI	WCCGGW	1 cut(s)	335
Bse118I	RCCGGY	1 cut(s)	731
Bse21I	CCTNAGG	1 cut(s)	280
Bse3DI	GCAATG	1 cut(s)	793
BseGI	GGATG	4 cut(s)	555, 645, 662, 719
BseMI	GCAATG	1 cut(s)	793
BseMII	CTCAG	1 cut(s)	257
BseXI	GCAGC	1 cut(s)	389
Bsh1285I	CGRYCG	1 cut(s)	729
BshFI	GGCC	2 cut(s)	264, 324
BshNI	GGYRCC	1 cut(s)	672
BsiEI	CGRYCG	1 cut(s)	729
BsiSI	CCGG	2 cut(s)	336, 732
BslFI	GGGAC	2 cut(s)	604, 827
BsmFI	GGGAC	2 cut(s)	604, 827
BsmI	GAATGC	1 cut(s)	198
BsnI	GGCC	2 cut(s)	264, 324
Bsp143I	GATC	3 cut(s)	27, 180, 213
BspACI	CCGC	1 cut(s)	729
BspANI	GGCC	2 cut(s)	264, 324
BspCNI	CTCAG	1 cut(s)	258
BspLI	GGNNCC	1 cut(s)	674
BspMAI	CTGCAG	1 cut(s)	237
BspMI	ACCTGC	1 cut(s)	240
BspT107I	GGYRCC	1 cut(s)	672
BsrDI	GCAATG	1 cut(s)	793
BsrFI	RCCGGY	1 cut(s)	731
BssAI	RCCGGY	1 cut(s)	731
BssMI	GATC	3 cut(s)	27, 180, 213
Bst4CI	ACNGT	1 cut(s)	867
BstC8I	GCNNGC	2 cut(s)	498, 733
BstDEI	CTNAG	2 cut(s)	266, 280
BstF5I	GGATG	4 cut(s)	555, 645, 662, 719
BstKTI	GATC	3 cut(s)	30, 183, 216
BstMBI	GATC	3 cut(s)	27, 180, 213
BstMCI	CGRYCG	1 cut(s)	729
BstSFI	CTRYAG	1 cut(s)	233
BstV1I	GCAGC	1 cut(s)	389
BstXI	CCANNNNNNTGG	1 cut(s)	656
Bsu36I	CCTNAGG	1 cut(s)	280
BsuI	GTATCC	1 cut(s)	350
BsuRI	GGCC	2 cut(s)	264, 324
BtsCI	GGATG	4 cut(s)	555, 645, 662, 719
BtsI	GCAGTG	1 cut(s)	715
BtsIMutI	CAGTG	1 cut(s)	715
BveI	ACCTGC	1 cut(s)	240
Cac8I	GCNNGC	2 cut(s)	498, 733
Cfr10I	RCCGGY	1 cut(s)	731
Cfr13I	GGNCC	2 cut(s)	262, 826
Csp6I	GTAC	2 cut(s)	209, 660
CviAII	CATG	2 cut(s)	110, 669
CviQI	GTAC	2 cut(s)	209, 660
DdeI	CTNAG	2 cut(s)	266, 280
DpnI	GATC	3 cut(s)	29, 182, 215
DpnII	GATC	3 cut(s)	27, 180, 213
EaeI	YGGCCR	1 cut(s)	322
Eco32I	GATATC	1 cut(s)	137
Eco47I	GGWCC	1 cut(s)	826
Eco57I	CTGAAG	1 cut(s)	272
Eco81I	CCTNAGG	1 cut(s)	280
EcoO109I	RGGNCCY	1 cut(s)	262
EcoRV	GATATC	1 cut(s)	137
EcoT22I	ATGCAT	1 cut(s)	255
FaeI	CATG	2 cut(s)	113, 672
FaiI	YATR	5 cut(s)	111, 592, 670, 684, 704
FaqI	GGGAC	2 cut(s)	604, 827
FatI	CATG	2 cut(s)	109, 668
FbaI	TGATCA	1 cut(s)	180
Fnu4HI	GCNGC	1 cut(s)	378
FokI	GGATG	4 cut(s)	542, 632, 649, 726
Fsp4HI	GCNGC	1 cut(s)	378
FspBI	CTAG	2 cut(s)	142, 799
GluI	GCNGC	1 cut(s)	378
HaeIII	GGCC	2 cut(s)	264, 324
HapII	CCGG	2 cut(s)	336, 732
Hin1II	CATG	2 cut(s)	113, 672
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HinfI	GANTC	2 cut(s)	566, 750
HpaII	CCGG	2 cut(s)	336, 732
Hpy166II	GTNNAC	3 cut(s)	222, 605, 759
Hpy188I	TCNGA	2 cut(s)	291, 565
Hpy188III	TCNNGA	6 cut(s)	105, 307, 544, 613, 688, 719
Hpy8I	GTNNAC	3 cut(s)	222, 605, 759
Hpy99I	CGWCG	1 cut(s)	545
HpyAV	CCTTC	3 cut(s)	253, 635, 817
HpyCH4III	ACNGT	1 cut(s)	867
HpyCH4V	TGCA	5 cut(s)	19, 204, 235, 253, 500
HpyF3I	CTNAG	2 cut(s)	266, 280
Hsp92II	CATG	2 cut(s)	113, 672
KroI	GCCGGC	1 cut(s)	731
KroNI	GCCGGC	1 cut(s)	733
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	3 cut(s)	27, 180, 213
LmnI	GCTCC	1 cut(s)	802
Lsp1109I	GCAGC	1 cut(s)	389
LweI	GCATC	4 cut(s)	240, 368, 509, 814
MaeI	CTAG	2 cut(s)	142, 799
MaeIII	GTNAC	1 cut(s)	876
MalI	GATC	3 cut(s)	29, 182, 215
MboI	GATC	3 cut(s)	27, 180, 213
MboII	GAAGA	6 cut(s)	37, 322, 322, 341, 513, 567
MlsI	TGGCCA	1 cut(s)	324
MluCI	AATT	7 cut(s)	35, 99, 296, 424, 450, 629, 677
MluNI	TGGCCA	1 cut(s)	324
MmeI	TCCRAC	1 cut(s)	251
MnlI	CCTC	7 cut(s)	83, 285, 426, 607, 652, 676, 715
Mox20I	TGGCCA	1 cut(s)	324
Mph1103I	ATGCAT	1 cut(s)	255
MroNI	GCCGGC	1 cut(s)	731
MroXI	GAANNNNTTC	1 cut(s)	536
MscI	TGGCCA	1 cut(s)	324
MseI	TTAA	3 cut(s)	442, 512, 695
MslI	CAYNNNNRTG	1 cut(s)	667
Msp20I	TGGCCA	1 cut(s)	324
MspI	CCGG	2 cut(s)	336, 732
Mva1269I	GAATGC	1 cut(s)	198
NaeI	GCCGGC	1 cut(s)	733
NdeII	GATC	3 cut(s)	27, 180, 213
NgoMIV	GCCGGC	1 cut(s)	731
NlaIII	CATG	2 cut(s)	113, 672
NlaIV	GGNNCC	1 cut(s)	674
NsiI	ATGCAT	1 cut(s)	255
PctI	GAATGC	1 cut(s)	198
PdiI	GCCGGC	1 cut(s)	733
PdmI	GAANNNNTTC	1 cut(s)	536
PfeI	GAWTC	2 cut(s)	566, 750
PflFI	GACNNNGTC	1 cut(s)	111
PkrI	GCNGC	1 cut(s)	379
PspN4I	GGNNCC	1 cut(s)	674
PspPI	GGNCC	2 cut(s)	262, 826
PstI	CTGCAG	1 cut(s)	237
PsyI	GACNNNGTC	1 cut(s)	111
RsaI	GTAC	2 cut(s)	210, 661
RsaNI	GTAC	2 cut(s)	209, 660
RseI	CAYNNNNRTG	1 cut(s)	667
SaqAI	TTAA	3 cut(s)	442, 512, 695
SatI	GCNGC	1 cut(s)	378
Sau3AI	GATC	3 cut(s)	27, 180, 213
Sau96I	GGNCC	2 cut(s)	262, 826
SfaNI	GCATC	4 cut(s)	240, 368, 509, 814
SfcI	CTRYAG	1 cut(s)	233
SinI	GGWCC	1 cut(s)	826
SmiMI	CAYNNNNRTG	1 cut(s)	667
SmlI	CTYRAG	2 cut(s)	435, 688
SmoI	CTYRAG	2 cut(s)	435, 688
Sse9I	AATT	7 cut(s)	35, 99, 296, 424, 450, 629, 677
SsiI	CCGC	1 cut(s)	729
SspI	AATATT	1 cut(s)	833
SspMI	CTAG	2 cut(s)	142, 799
TaaI	ACNGT	1 cut(s)	867
TasI	AATT	7 cut(s)	35, 99, 296, 424, 450, 629, 677
TatI	WGTACW	1 cut(s)	208
TfiI	GAWTC	2 cut(s)	566, 750
Tru1I	TTAA	3 cut(s)	442, 512, 695
Tru9I	TTAA	3 cut(s)	442, 512, 695
TscAI	CASTG	1 cut(s)	715
TseI	GCWGC	1 cut(s)	377
TspDTI	ATGAA	2 cut(s)	341, 456
TspRI	CASTG	1 cut(s)	715
Tth111I	GACNNNGTC	1 cut(s)	111
VpaK11BI	GGWCC	1 cut(s)	826
XapI	RAATTY	3 cut(s)	296, 424, 450
XmnI	GAANNNNTTC	1 cut(s)	536
XspI	CTAG	2 cut(s)	142, 799
Zsp2I	ATGCAT	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.