Rh1CG335700

S-type anion channel

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Reverse (-)
60980290 .. 60982023
1734 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG335700.1

Sequence Viewer

Length: 1488 bp
ATGGATTCTGAAGAACAGGTTTCCATTCAAATTCCATCTCTCATCAAATACATATCCTCAAATGAAGTGGTTGGTTTCGATAATGTTGAGGAGCATACCGTTCTCAATGATAAGCATCAGCCATCAGCTAGGGAAATTGAGATAGCTACTTTAGAAAGCACAGTTGATAAAGATGAACAACCAATTCATCAAAGGACGCACTCTGTTTCTATTAGTATGCCGCCATCACCCATGGGAGTTCATTTAGAGAAAATAAATGGAGTTTTCTTCACTCCTGAAACAATTTTCAACACTGGAATTCCAGATTCTTCTTCTGCTGCAACTAAGAGTGGTAGTAGCCGCAAACTTCCGGAAGCAGCAAAGTTTCACTCTCAACCCTTGCCAAAAGGCTCTACATTTGAAGATCAGGCAATGCACACTGGACATTTCCCTTATCATCCAAGTATTAAAAGGCTGAGAGATAATAGGTTTGACAATTTCAAGACTTGGTCTGGGAAACTTGAAAGGCAGATATCACTACTACGGGGAAAGACACCGCGAAAAAGTGATCAACCAGAGAATGCTTTTGCTCATAGTACAGATCAGGTTGACCCTTTACCTGCAGGACGTTACTTTGATGCATTGGAAGGGCCTGAGTTGGACACTCTTAGGGCTTCAGAGGAAATAACTCTTCCAGAAGACAAGCAGTGGCCATTTCTTCTCCGGTATCCCATTTCTTCATTTAGCATCTGCCTTGGGGTCAGCAGCCAAGCTATTTTGTGGAAAACCCTACCCACCTCGGCCTCCACGAAATTTCTCCACTTGAGCTTAACAACAAATTTGGTTCTGTGGTGCATTGCTGTTGCTACATTAGTTGGTGTTGCTTGCATCTACCTTCTTAAAATCATCTTTTACTTTGAAGCAGTTCGTCGCGAGTATTACCACCCAATTCGAATCAACTTCTTCTTTGCCCCATTTATAGCCCTCTTATTCTTAGCTCTAGGAGTGCCACCTTCCATTTCTAGCAACCTCCATCCAGCTCTTTGGTACATCCTCATGACCCCATTTTTATGTCTTGAGCTTAAAATCTATGGACAGTGGATGTCAGGAGGGCAACGCCGGCTTTCAAAAGTAGCCAATCCTGTTAACCATCTCTCCATTGTTGGCAACTTTGTTGGGGCTCTGCTAGGTGCTTCGATGGGACTAAAAGAAGGACCAATATTCTTTTTCGCTGTTGGGATGGCTCACTATATGGTCTTATTTGTAACTCTCTACCAGAGACTTCCAACAAATGAGACAGTAATCCCAAAGGAGCTCCATCCTGTGTTCTTTCTGTTTGTTGCTGCACCTAGCGTAGCTTCCATGGCTTGGGCAAGACTCCAAGGCTCCTTTGATTATAGCTCGCGGATTGGTTACTTCATTTCCATGTTCCTTTATCTCTCACTGGCAAGTACATATAACCTTCATCAATTAAGTTGCAGCCATCACTGTTATCAAACATATGCCTGA

Protein Analysis

495

Amino Acids

55.66

Weight (kDa)

7.03

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SLAC1 PF03595 236 - 475 3e-32 Voltage-dependent anion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 607
AccB7I CCANNNNNTGG 1 cut(s) 1347
AccII CGCG 3 cut(s) 538, 912, 1384
AccIII TCCGGA 1 cut(s) 349
AciI CCGC 4 cut(s) 221, 340, 536, 1384
AcoI YGGCCR 1 cut(s) 689
AcsI RAATTY 4 cut(s) 30, 297, 791, 817
AcuI CTGAAG 2 cut(s) 30, 639
AfaI GTAC 3 cut(s) 577, 1028, 1432
AfiI CCNNNNNNNGG 1 cut(s) 1347
AgsI TTSAA 7 cut(s) 29, 289, 401, 481, 503, 899, 1107
Alw21I GWGCWC 1 cut(s) 1296
Alw26I GTCTC 2 cut(s) 1252, 1268
Aor13HI TCCGGA 1 cut(s) 349
AoxI GGCC 3 cut(s) 629, 689, 780
ApeKI GCWGC 5 cut(s) 317, 356, 744, 1322, 1458
ApoI RAATTY 4 cut(s) 30, 297, 791, 817
Asp700I GAANNNNTTC 1 cut(s) 903
AspS9I GGNCC 2 cut(s) 629, 1193
AsuHPI GGTGA 1 cut(s) 219
AsuII TTCGAA 1 cut(s) 931
AvaII GGWCC 1 cut(s) 1193
BalI TGGCCA 1 cut(s) 691
BanII GRGCYC 2 cut(s) 1162, 1296
BbsI GAAGAC 1 cut(s) 684
Bbv12I GWGCWC 1 cut(s) 1296
BbvI GCAGC 5 cut(s) 304, 368, 756, 1309, 1470
BccI CCATC 9 cut(s) 43, 130, 232, 1020, 1137, 1171, 1213, 1305, 1470
BciVI GTATCC 1 cut(s) 717
BclI TGATCA 1 cut(s) 547
BcoDI GTCTC 2 cut(s) 1252, 1268
BfaI CTAG 5 cut(s) 129, 980, 1002, 1166, 1329
BfmI CTRYAG 1 cut(s) 600
BfuAI ACCTGC 1 cut(s) 607
BfuI GTATCC 1 cut(s) 717
BisI GCNGC 7 cut(s) 221, 318, 340, 357, 745, 1323, 1459
BlsI GCNGC 7 cut(s) 222, 319, 341, 358, 746, 1324, 1460
Bme18I GGWCC 1 cut(s) 1193
BmgT120I GGNCC 2 cut(s) 629, 1193
BmiI GGNNCC 1 cut(s) 1366
BmsI GCATC 4 cut(s) 124, 607, 735, 876
BpiI GAAGAC 1 cut(s) 684
Bpu14I TTCGAA 1 cut(s) 931
BpuEI CTTGAG 2 cut(s) 823, 1076
BsaBI GATNNNNATC 1 cut(s) 114
BsaJI CCNNGG 5 cut(s) 231, 733, 777, 1341, 1360
BsaWI WCCGGW 2 cut(s) 349, 702
BsaXI ACNNNNNCTCC 2 cut(s) 1118, 1148
Bsc4I CCNNNNNNNGG 1 cut(s) 1347
Bse118I RCCGGY 1 cut(s) 1098
Bse1I ACTGG 3 cut(s) 298, 424, 1428
Bse3DI GCAATG 2 cut(s) 417, 834
Bse8I GATNNNNATC 1 cut(s) 114
BseAI TCCGGA 1 cut(s) 349
BseDI CCNNGG 5 cut(s) 231, 733, 777, 1341, 1360
BseGI GGATG 6 cut(s) 436, 1012, 1029, 1086, 1224, 1297
BseJI GATNNNNATC 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 1347
BseMI GCAATG 2 cut(s) 417, 834
BseMII CTCAG 2 cut(s) 446, 624
BseNI ACTGG 3 cut(s) 298, 424, 1428
BseRI GAGGAG 1 cut(s) 104
BseXI GCAGC 5 cut(s) 304, 368, 756, 1309, 1470
BsgI GTGCAG 1 cut(s) 1308
Bsh1236I CGCG 3 cut(s) 538, 912, 1384
BshFI GGCC 3 cut(s) 631, 691, 782
BsiHKAI GWGCWC 1 cut(s) 1296
BsiSI CCGG 3 cut(s) 350, 703, 1099
BslFI GGGAC 1 cut(s) 1194
BslI CCNNNNNNNGG 1 cut(s) 1347
BsmAI GTCTC 2 cut(s) 1252, 1268
BsmFI GGGAC 1 cut(s) 1194
BsmI GAATGC 1 cut(s) 565
BsnI GGCC 3 cut(s) 631, 691, 782
Bsp119I TTCGAA 1 cut(s) 931
Bsp1286I GDGCHC 2 cut(s) 1162, 1296
Bsp13I TCCGGA 1 cut(s) 349
Bsp143I GATC 3 cut(s) 403, 547, 580
Bsp19I CCATGG 2 cut(s) 231, 1341
Bsp68I TCGCGA 1 cut(s) 912
BspACI CCGC 4 cut(s) 221, 340, 536, 1384
BspANI GGCC 3 cut(s) 631, 691, 782
BspCNI CTCAG 2 cut(s) 447, 625
BspEI TCCGGA 1 cut(s) 349
BspFNI CGCG 3 cut(s) 538, 912, 1384
BspHI TCATGA 1 cut(s) 1035
BspLI GGNNCC 1 cut(s) 1366
BspMAI CTGCAG 1 cut(s) 604
BspMI ACCTGC 1 cut(s) 607
BspT104I TTCGAA 1 cut(s) 931
BsrDI GCAATG 2 cut(s) 417, 834
BsrFI RCCGGY 1 cut(s) 1098
BsrI ACTGG 3 cut(s) 298, 424, 1428
BssAI RCCGGY 1 cut(s) 1098
BssECI CCNNGG 5 cut(s) 231, 733, 777, 1341, 1360
BssMI GATC 3 cut(s) 403, 547, 580
BssT1I CCWWGG 4 cut(s) 231, 733, 1341, 1360
Bst4CI ACNGT 5 cut(s) 100, 163, 1077, 1279, 1469
Bst6I CTCTTC 1 cut(s) 675
BstBI TTCGAA 1 cut(s) 931
BstC8I GCNNGC 3 cut(s) 865, 1100, 1382
BstDEI CTNAG 5 cut(s) 324, 455, 633, 647, 973
BstDSI CCRYGG 2 cut(s) 231, 1341
BstF5I GGATG 6 cut(s) 436, 1012, 1029, 1086, 1224, 1297
BstFNI CGCG 3 cut(s) 538, 912, 1384
BstKTI GATC 3 cut(s) 406, 550, 583
BstMAI GTCTC 2 cut(s) 1252, 1268
BstMBI GATC 3 cut(s) 403, 547, 580
BstMWI GCNNNNNNNGC 2 cut(s) 1099, 1343
BstSFI CTRYAG 1 cut(s) 600
BstUI CGCG 3 cut(s) 538, 912, 1384
BstV1I GCAGC 5 cut(s) 304, 368, 756, 1309, 1470
BstV2I GAAGAC 1 cut(s) 684
BstXI CCANNNNNNTGG 1 cut(s) 1023
BsuI GTATCC 1 cut(s) 717
BsuRI GGCC 3 cut(s) 631, 691, 782
BtgI CCRYGG 2 cut(s) 231, 1341
BtsCI GGATG 6 cut(s) 436, 1012, 1029, 1086, 1224, 1297
BtsI GCAGTG 1 cut(s) 692
BtsIMutI CAGTG 6 cut(s) 291, 417, 692, 1082, 1421, 1465
BtuMI TCGCGA 1 cut(s) 912
BveI ACCTGC 1 cut(s) 607
Cac8I GCNNGC 3 cut(s) 865, 1100, 1382
CciI TCATGA 1 cut(s) 1035
Cfr10I RCCGGY 1 cut(s) 1098
Cfr13I GGNCC 2 cut(s) 629, 1193
CseI GACGC 1 cut(s) 205
Csp6I GTAC 3 cut(s) 576, 1027, 1431
CspCI CAANNNNNGTGG 2 cut(s) 48, 83
CviAII CATG 4 cut(s) 232, 1036, 1342, 1405
CviQI GTAC 3 cut(s) 576, 1027, 1431
DdeI CTNAG 5 cut(s) 324, 455, 633, 647, 973
DpnI GATC 3 cut(s) 405, 549, 582
DpnII GATC 3 cut(s) 403, 547, 580
EaeI YGGCCR 1 cut(s) 689
Eam1104I CTCTTC 1 cut(s) 675
EarI CTCTTC 1 cut(s) 675
Ecl136II GAGCTC 1 cut(s) 1294
Eco130I CCWWGG 4 cut(s) 231, 733, 1341, 1360
Eco24I GRGCYC 2 cut(s) 1162, 1296
Eco32I GATATC 1 cut(s) 513
Eco47I GGWCC 1 cut(s) 1193
Eco53kI GAGCTC 1 cut(s) 1294
Eco57I CTGAAG 2 cut(s) 30, 639
EcoICRI GAGCTC 1 cut(s) 1294
EcoO109I RGGNCCY 1 cut(s) 629
EcoRI GAATTC 1 cut(s) 297
EcoRV GATATC 1 cut(s) 513
EcoT14I CCWWGG 4 cut(s) 231, 733, 1341, 1360
EcoT22I ATGCAT 1 cut(s) 622
EcoT38I GRGCYC 2 cut(s) 1162, 1296
ErhI CCWWGG 4 cut(s) 231, 733, 1341, 1360
FaeI CATG 4 cut(s) 235, 1039, 1345, 1408
FaqI GGGAC 1 cut(s) 1194
FatI CATG 4 cut(s) 231, 1035, 1341, 1404
FauNDI CATATG 1 cut(s) 1480
FbaI TGATCA 1 cut(s) 547
Fnu4HI GCNGC 7 cut(s) 221, 318, 340, 357, 745, 1323, 1459
FokI GGATG 6 cut(s) 423, 999, 1016, 1093, 1231, 1284
FriOI GRGCYC 2 cut(s) 1162, 1296
Fsp4HI GCNGC 7 cut(s) 221, 318, 340, 357, 745, 1323, 1459
FspBI CTAG 5 cut(s) 129, 980, 1002, 1166, 1329
GluI GCNGC 7 cut(s) 221, 318, 340, 357, 745, 1323, 1459
HaeIII GGCC 3 cut(s) 631, 691, 782
HapII CCGG 3 cut(s) 350, 703, 1099
HgaI GACGC 1 cut(s) 205
Hin1II CATG 4 cut(s) 235, 1039, 1345, 1408
HincII GTYRAC 2 cut(s) 589, 1126
HindII GTYRAC 2 cut(s) 589, 1126
HinfI GANTC 4 cut(s) 5, 305, 933, 1356
HpaI GTTAAC 1 cut(s) 1126
HpaII CCGG 3 cut(s) 350, 703, 1099
HphI GGTGA 1 cut(s) 219
Hpy166II GTNNAC 2 cut(s) 589, 1126
Hpy188I TCNGA 2 cut(s) 10, 658
Hpy188III TCNNGA 9 cut(s) 275, 302, 350, 481, 674, 911, 1036, 1055, 1086
Hpy8I GTNNAC 2 cut(s) 589, 1126
Hpy99I CGWCG 1 cut(s) 912
HpyAV CCTTC 5 cut(s) 620, 884, 1002, 1184, 1451
HpyCH4III ACNGT 5 cut(s) 100, 163, 1077, 1279, 1469
HpyCH4IV ACGT 1 cut(s) 607
HpyCH4V TGCA 8 cut(s) 320, 415, 602, 620, 834, 867, 1325, 1458
HpyF10VI GCNNNNNNNGC 2 cut(s) 1099, 1343
HpyF3I CTNAG 5 cut(s) 324, 455, 633, 647, 973
HpySE526I ACGT 1 cut(s) 607
Hsp92II CATG 4 cut(s) 235, 1039, 1345, 1408
Kpn2I TCCGGA 1 cut(s) 349
KroI GCCGGC 1 cut(s) 1098
KroNI GCCGGC 1 cut(s) 1100
Ksp22I TGATCA 1 cut(s) 547
KspAI GTTAAC 1 cut(s) 1126
Kzo9I GATC 3 cut(s) 403, 547, 580
LmnI GCTCC 4 cut(s) 91, 1291, 1299, 1370
Lsp1109I GCAGC 5 cut(s) 304, 368, 756, 1309, 1470
LweI GCATC 4 cut(s) 124, 607, 735, 876
MaeI CTAG 5 cut(s) 129, 980, 1002, 1166, 1329
MaeII ACGT 1 cut(s) 607
MaeIII GTNAC 3 cut(s) 608, 1243, 1391
MalI GATC 3 cut(s) 405, 549, 582
MboI GATC 3 cut(s) 403, 547, 580
MhlI GDGCHC 2 cut(s) 1162, 1296
MlsI TGGCCA 1 cut(s) 691
MluNI TGGCCA 1 cut(s) 691
MlyI GAGTC 1 cut(s) 1350
MmeI TCCRAC 2 cut(s) 618, 1289
MnlI CCTC 9 cut(s) 67, 82, 652, 787, 793, 974, 1019, 1043, 1082
Mox20I TGGCCA 1 cut(s) 691
Mph1103I ATGCAT 1 cut(s) 622
MroI TCCGGA 1 cut(s) 349
MroNI GCCGGC 1 cut(s) 1098
MroXI GAANNNNTTC 1 cut(s) 903
MscI TGGCCA 1 cut(s) 691
MseI TTAA 6 cut(s) 447, 809, 879, 1062, 1125, 1451
MslI CAYNNNNRTG 3 cut(s) 1034, 1048, 1403
Msp20I TGGCCA 1 cut(s) 691
MspI CCGG 3 cut(s) 350, 703, 1099
Mva1269I GAATGC 1 cut(s) 565
MvnI CGCG 3 cut(s) 538, 912, 1384
MwoI GCNNNNNNNGC 2 cut(s) 1099, 1343
NaeI GCCGGC 1 cut(s) 1100
NcoI CCATGG 2 cut(s) 231, 1341
NdeI CATATG 1 cut(s) 1480
NdeII GATC 3 cut(s) 403, 547, 580
NgoMIV GCCGGC 1 cut(s) 1098
NlaIII CATG 4 cut(s) 235, 1039, 1345, 1408
NlaIV GGNNCC 1 cut(s) 1366
NmeAIII GCCGAG 1 cut(s) 758
NruI TCGCGA 1 cut(s) 912
NsiI ATGCAT 1 cut(s) 622
NspV TTCGAA 1 cut(s) 931
PagI TCATGA 1 cut(s) 1035
PcsI WCGNNNNNNNCGW 1 cut(s) 785
PctI GAATGC 1 cut(s) 565
PdiI GCCGGC 1 cut(s) 1100
PdmI GAANNNNTTC 1 cut(s) 903
PfeI GAWTC 3 cut(s) 5, 305, 933
PflFI GACNNNGTC 1 cut(s) 487
PflMI CCANNNNNTGG 1 cut(s) 1347
PkrI GCNGC 7 cut(s) 222, 319, 341, 358, 746, 1324, 1460
PleI GAGTC 1 cut(s) 1350
PpsI GAGTC 1 cut(s) 1350
Psp124BI GAGCTC 1 cut(s) 1296
PspN4I GGNNCC 1 cut(s) 1366
PspPI GGNCC 2 cut(s) 629, 1193
PstI CTGCAG 1 cut(s) 604
PsyI GACNNNGTC 1 cut(s) 487
RruI TCGCGA 1 cut(s) 912
RsaI GTAC 3 cut(s) 577, 1028, 1432
RsaNI GTAC 3 cut(s) 576, 1027, 1431
RseI CAYNNNNRTG 3 cut(s) 1034, 1048, 1403
SacI GAGCTC 1 cut(s) 1296
SaqAI TTAA 6 cut(s) 447, 809, 879, 1062, 1125, 1451
SatI GCNGC 7 cut(s) 221, 318, 340, 357, 745, 1323, 1459
Sau3AI GATC 3 cut(s) 403, 547, 580
Sau96I GGNCC 2 cut(s) 629, 1193
SbfI CCTGCAGG 1 cut(s) 604
SchI GAGTC 1 cut(s) 1350
SdaI CCTGCAGG 1 cut(s) 604
SduI GDGCHC 2 cut(s) 1162, 1296
SfaNI GCATC 4 cut(s) 124, 607, 735, 876
SfcI CTRYAG 1 cut(s) 600
SfuI TTCGAA 1 cut(s) 931
SinI GGWCC 1 cut(s) 1193
SmiMI CAYNNNNRTG 3 cut(s) 1034, 1048, 1403
SmlI CTYRAG 2 cut(s) 802, 1055
SmoI CTYRAG 2 cut(s) 802, 1055
Sse8387I CCTGCAGG 1 cut(s) 604
SsiI CCGC 4 cut(s) 221, 340, 536, 1384
SspI AATATT 1 cut(s) 1200
SspMI CTAG 5 cut(s) 129, 980, 1002, 1166, 1329
SstI GAGCTC 1 cut(s) 1296
StyI CCWWGG 4 cut(s) 231, 733, 1341, 1360
TaaI ACNGT 5 cut(s) 100, 163, 1077, 1279, 1469
TaiI ACGT 1 cut(s) 610
TaqI TCGA 3 cut(s) 78, 931, 1175
TatI WGTACW 2 cut(s) 575, 1430
TauI GCSGC 2 cut(s) 223, 342
TfiI GAWTC 3 cut(s) 5, 305, 933
Tru1I TTAA 6 cut(s) 447, 809, 879, 1062, 1125, 1451
Tru9I TTAA 6 cut(s) 447, 809, 879, 1062, 1125, 1451
TscAI CASTG 6 cut(s) 298, 424, 692, 1082, 1428, 1472
TseI GCWGC 5 cut(s) 317, 356, 744, 1322, 1458
TspDTI ATGAA 7 cut(s) 78, 176, 189, 230, 708, 1387, 1433
TspRI CASTG 6 cut(s) 298, 424, 692, 1082, 1428, 1472
Tth111I GACNNNGTC 1 cut(s) 487
Van91I CCANNNNNTGG 1 cut(s) 1347
VpaK11BI GGWCC 1 cut(s) 1193
XapI RAATTY 4 cut(s) 30, 297, 791, 817
XmnI GAANNNNTTC 1 cut(s) 903
XspI CTAG 5 cut(s) 129, 980, 1002, 1166, 1329
Zsp2I ATGCAT 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.