Rw1G038050

S-type anion channel

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
65645396 .. 65647727
2332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G038050.1

Sequence Viewer

Length: 1833 bp
ATGGATTCTGAAGAACAGGTTTCCCTTCAAATTCCATCTCTCATCAAATACATATCCTCTAATGAAGTGGTTGGTTTCGATAATGTTGAGGAGCATACCATTCTCAATGATAAGCCTCAACCATCAGCTGAGGAAATTGAGATAGCTGCGTTAGAAAGCACAGTTGATGAATATGAACCACCAATTCATCAAAGGATGCACTCTGTTTCTATTAGTATGCCGCCATCACCCGTGGAAGTTCATTTAGAGAAAATAAAAGGAATTCTCTTCAGTCCTGAAACAATTTTCAACGGTGGAATTCCAGATTCTTCTTCTGCTGCAATTAAGAGTGCTAGTAGCAGCAAACTTCCGGAAGCAGCAAAGTGTCACTCTCAACCCTTGCCAAAAGGTTCTGCATTTGAAGATCAGGCAACGCATGCTGGGCATTTCCCCTATCATCCAAGTATTAAAACGCTGAGAGATAACAGGTTTGATAATTTCAAGACATGGTCCGGAAAATTTGAAAGGCAGATAACACTACTACGGGGAAAGACACCGCGAAAAAGTGCTCAAACAGAGAATGCTTTTGCTCAAAGTACAGATCAAGTTGACCGTTTACCCGCAGACCGTTACTTTGATGCATTGGAAGGGCCTGAGTTGGACACTCTTAGGGCTTCAGAGGAAATAATGCTTCCAGAGGACAAGCAGTGGCCATTTCTTCTCCGGTATCCCATTTCTTCATTTAGCATCTGCCTTGGTGTCAGCAGCCAAGCTATTTTGTGGAAAACCCTACCTACCTCGGCCTCCACGAAATTTCTCCACTTGAACCTTAAAACAAATTTGGCTCTGTGGTGCATTGCCGTTGCTACATTAGTTGGTGTTGCTTGCATCTACCTTCTTAAAATCATCTTTTACTTTGAAGCTGTTCGTCGCGAGTATTTCCACCCAATTCGAATCAACTTCTTCTTTTCCCCATTTATAGCCATCTTATTCTTAGCTCTAGGAGTGCCACCTTCCATTTCTAGCAACCTCCATCCAGCTCTCTGGTACATCCTCATGACCCCACTTTTATGTCTTGAGCTTAAAATCTATGGACAGTGGATGTCAGGAGGGCAACGCCGGCTTTCAAAAGTAGCCAATCCTGTTAACCATCTCTCCATTGTTGGCAACTTTGTGGGGGCTCTGCTAGGTGCTTCAATGGGACTAAGAGAAGGACCAATATTCTTCTTCGCAGTTGGGATGGCTCACTATATGGTCTTATTTGTAACTCTTTACCAGAGACTTCCAACAAATGAAACAGTAATCCCAAAGGAGCTCCATCCTGTGTTCTTTCTGTTTGTTGCTGCACCTAGCGTAGCTTCCATGGCTTGGGCAAGAATCCAAGGCTCCTTTGATTATGGCTCGCGGATTGCTTACTTCATCGCCATGTTCCTTTATCTCTCACTGGCAATCCGAATCAATTTCTTCCGAGGATTCAAGTTCTCATTGGCATGGTGGGCATACACTTTCCCAATGACTGGTGCTGCCATTGCAACCATTAGGTACTCGAATGAAGTAACGACTGTAGCAACTCAAGCTTTGGCTGTCATACTCTCCATCATTGCCACGCTCACGGTCACTGCTCTCTTCATAACAACCGTCTTGCATGCCTTTGTGCTTCAAGACCTCTTCCCCAATGACATTGCAATTGCCATCAGCGACAGAAGCCCAAATGTAGCACGCAGAAAGTGGTTCCATCTAAAAAATGGAACCTCTTCGGATTCAAAAGACATTGAGAATTTCTTGAAGTCAGCAACAAGCTCAGAAAAAAAGGATTTGGAAATTAAAACGTTACTTGAAACTGCCAAGCTCTAG

Protein Analysis

610

Amino Acids

68.22

Weight (kDa)

7.28

Isoelectric Point (pI)

43.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SLAC1 PF03595 236 - 540 2.5e-45 Voltage-dependent anion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 1347, 1496
AccII CGCG 3 cut(s) 538, 912, 1384
AccIII TCCGGA 2 cut(s) 349, 491
AciI CCGC 4 cut(s) 221, 536, 600, 1384
AclI AACGTT 1 cut(s) 1808
AcoI YGGCCR 1 cut(s) 689
AcsI RAATTY 7 cut(s) 30, 261, 297, 497, 791, 817, 1756
AcuI CTGAAG 3 cut(s) 30, 253, 639
AfaI GTAC 3 cut(s) 577, 1028, 1523
AfiI CCNNNNNNNGG 2 cut(s) 1347, 1496
Alw21I GWGCWC 2 cut(s) 550, 1296
Alw26I GTCTC 1 cut(s) 1252
Aor13HI TCCGGA 2 cut(s) 349, 491
AoxI GGCC 3 cut(s) 629, 689, 780
ApeKI GCWGC 7 cut(s) 146, 317, 339, 356, 744, 1322, 1502
ApoI RAATTY 7 cut(s) 30, 261, 297, 497, 791, 817, 1756
ArsI GACNNNNNNTTYG 2 cut(s) 596, 628
Asp700I GAANNNNTTC 2 cut(s) 903, 1732
AspS9I GGNCC 3 cut(s) 489, 629, 1193
AsuHPI GGTGA 1 cut(s) 219
AsuII TTCGAA 1 cut(s) 931
AvaII GGWCC 2 cut(s) 489, 1193
BalI TGGCCA 1 cut(s) 691
BanII GRGCYC 2 cut(s) 1162, 1296
Bbv12I GWGCWC 2 cut(s) 550, 1296
BbvCI CCTCAGC 1 cut(s) 129
BbvI GCAGC 7 cut(s) 133, 304, 351, 368, 756, 1309, 1489
BceAI ACGGC 1 cut(s) 824
BciVI GTATCC 1 cut(s) 717
BcoDI GTCTC 1 cut(s) 1252
BfaI CTAG 6 cut(s) 333, 980, 1002, 1166, 1329, 1831
BfmI CTRYAG 1 cut(s) 1542
BfuI GTATCC 1 cut(s) 717
BisI GCNGC 8 cut(s) 147, 221, 318, 340, 357, 745, 1323, 1503
BlsI GCNGC 8 cut(s) 148, 222, 319, 341, 358, 746, 1324, 1504
Bme18I GGWCC 2 cut(s) 489, 1193
BmgT120I GGNCC 3 cut(s) 489, 629, 1193
BmiI GGNNCC 3 cut(s) 1366, 1712, 1729
BmsI GCATC 4 cut(s) 186, 607, 735, 876
Bpu10I CCTNAGC 1 cut(s) 129
Bpu14I TTCGAA 1 cut(s) 931
BpuEI CTTGAG 2 cut(s) 1076, 1536
BsaJI CCNNGG 6 cut(s) 231, 733, 777, 1341, 1360, 1447
BsaWI WCCGGW 3 cut(s) 349, 491, 702
BsaXI ACNNNNNCTCC 2 cut(s) 1118, 1148
Bsc4I CCNNNNNNNGG 2 cut(s) 1347, 1496
Bse118I RCCGGY 1 cut(s) 1098
Bse1I ACTGG 2 cut(s) 1428, 1501
Bse3DI GCAATG 4 cut(s) 834, 1506, 1578, 1659
BseAI TCCGGA 2 cut(s) 349, 491
BseDI CCNNGG 6 cut(s) 231, 733, 777, 1341, 1360, 1447
BseGI GGATG 7 cut(s) 201, 436, 1012, 1029, 1086, 1224, 1297
BseLI CCNNNNNNNGG 2 cut(s) 1347, 1496
BseMI GCAATG 4 cut(s) 834, 1506, 1578, 1659
BseMII CTCAG 4 cut(s) 120, 446, 624, 1794
BseNI ACTGG 2 cut(s) 1428, 1501
BseRI GAGGAG 1 cut(s) 104
BseXI GCAGC 7 cut(s) 133, 304, 351, 368, 756, 1309, 1489
BseYI CCCAGC 1 cut(s) 419
BsgI GTGCAG 1 cut(s) 1308
Bsh1236I CGCG 3 cut(s) 538, 912, 1384
BshFI GGCC 3 cut(s) 631, 691, 782
BsiHKAI GWGCWC 2 cut(s) 550, 1296
BsiSI CCGG 4 cut(s) 350, 492, 703, 1099
BslFI GGGAC 1 cut(s) 1194
BslI CCNNNNNNNGG 2 cut(s) 1347, 1496
BsmAI GTCTC 1 cut(s) 1252
BsmFI GGGAC 1 cut(s) 1194
BsmI GAATGC 1 cut(s) 565
BsnI GGCC 3 cut(s) 631, 691, 782
Bsp119I TTCGAA 1 cut(s) 931
Bsp1286I GDGCHC 3 cut(s) 550, 1162, 1296
Bsp13I TCCGGA 2 cut(s) 349, 491
Bsp143I GATC 2 cut(s) 403, 580
Bsp19I CCATGG 1 cut(s) 1341
Bsp68I TCGCGA 1 cut(s) 912
BspACI CCGC 4 cut(s) 221, 536, 600, 1384
BspANI GGCC 3 cut(s) 631, 691, 782
BspCNI CTCAG 4 cut(s) 121, 447, 625, 1793
BspEI TCCGGA 2 cut(s) 349, 491
BspFNI CGCG 3 cut(s) 538, 912, 1384
BspHI TCATGA 1 cut(s) 1035
BspLI GGNNCC 3 cut(s) 1366, 1712, 1729
BspT104I TTCGAA 1 cut(s) 931
BsrDI GCAATG 4 cut(s) 834, 1506, 1578, 1659
BsrFI RCCGGY 1 cut(s) 1098
BsrI ACTGG 2 cut(s) 1428, 1501
BssAI RCCGGY 1 cut(s) 1098
BssECI CCNNGG 6 cut(s) 231, 733, 777, 1341, 1360, 1447
BssMI GATC 2 cut(s) 403, 580
BssT1I CCWWGG 3 cut(s) 733, 1341, 1360
Bst4CI ACNGT 9 cut(s) 163, 293, 593, 608, 1077, 1279, 1543, 1594, 1618
Bst6I CTCTTC 4 cut(s) 272, 1610, 1652, 1738
BstAPI GCANNNNNTGC 1 cut(s) 416
BstBI TTCGAA 1 cut(s) 931
BstC8I GCNNGC 6 cut(s) 417, 865, 1100, 1382, 1626, 1699
BstDEI CTNAG 7 cut(s) 129, 455, 633, 647, 973, 1184, 1780
BstDSI CCRYGG 2 cut(s) 231, 1341
BstF5I GGATG 7 cut(s) 201, 436, 1012, 1029, 1086, 1224, 1297
BstFNI CGCG 3 cut(s) 538, 912, 1384
BstKTI GATC 2 cut(s) 406, 583
BstMAI GTCTC 1 cut(s) 1252
BstMBI GATC 2 cut(s) 403, 580
BstMWI GCNNNNNNNGC 8 cut(s) 416, 421, 1099, 1343, 1475, 1508, 1553, 1683
BstNSI RCATGY 2 cut(s) 419, 1628
BstSFI CTRYAG 1 cut(s) 1542
BstUI CGCG 3 cut(s) 538, 912, 1384
BstV1I GCAGC 7 cut(s) 133, 304, 351, 368, 756, 1309, 1489
BstXI CCANNNNNNTGG 1 cut(s) 1023
BsuI GTATCC 1 cut(s) 717
BsuRI GGCC 3 cut(s) 631, 691, 782
BtgI CCRYGG 2 cut(s) 231, 1341
BtgZI GCGATG 1 cut(s) 1384
BtsCI GGATG 7 cut(s) 201, 436, 1012, 1029, 1086, 1224, 1297
BtsI GCAGTG 2 cut(s) 692, 1596
BtsIMutI CAGTG 4 cut(s) 692, 1082, 1421, 1596
BtuMI TCGCGA 1 cut(s) 912
Cac8I GCNNGC 6 cut(s) 417, 865, 1100, 1382, 1626, 1699
CciI TCATGA 1 cut(s) 1035
Cfr10I RCCGGY 1 cut(s) 1098
Cfr13I GGNCC 3 cut(s) 489, 629, 1193
Csp6I GTAC 3 cut(s) 576, 1027, 1522
CviAII CATG 7 cut(s) 416, 486, 1036, 1342, 1405, 1470, 1625
CviQI GTAC 3 cut(s) 576, 1027, 1522
DdeI CTNAG 7 cut(s) 129, 455, 633, 647, 973, 1184, 1780
DpnI GATC 2 cut(s) 405, 582
DpnII GATC 2 cut(s) 403, 580
EaeI YGGCCR 1 cut(s) 689
Eam1104I CTCTTC 4 cut(s) 272, 1610, 1652, 1738
EarI CTCTTC 4 cut(s) 272, 1610, 1652, 1738
Ecl136II GAGCTC 1 cut(s) 1294
Eco130I CCWWGG 3 cut(s) 733, 1341, 1360
Eco24I GRGCYC 2 cut(s) 1162, 1296
Eco47I GGWCC 2 cut(s) 489, 1193
Eco53kI GAGCTC 1 cut(s) 1294
Eco57I CTGAAG 3 cut(s) 30, 253, 639
EcoICRI GAGCTC 1 cut(s) 1294
EcoO109I RGGNCCY 1 cut(s) 629
EcoRI GAATTC 2 cut(s) 261, 297
EcoT14I CCWWGG 3 cut(s) 733, 1341, 1360
EcoT22I ATGCAT 1 cut(s) 622
EcoT38I GRGCYC 2 cut(s) 1162, 1296
ErhI CCWWGG 3 cut(s) 733, 1341, 1360
FaeI CATG 7 cut(s) 419, 489, 1039, 1345, 1408, 1473, 1628
FaqI GGGAC 1 cut(s) 1194
FatI CATG 7 cut(s) 415, 485, 1035, 1341, 1404, 1469, 1624
FauI CCCGC 1 cut(s) 607
Fnu4HI GCNGC 8 cut(s) 147, 221, 318, 340, 357, 745, 1323, 1503
FokI GGATG 7 cut(s) 208, 423, 999, 1016, 1093, 1231, 1284
FriOI GRGCYC 2 cut(s) 1162, 1296
Fsp4HI GCNGC 8 cut(s) 147, 221, 318, 340, 357, 745, 1323, 1503
FspBI CTAG 6 cut(s) 333, 980, 1002, 1166, 1329, 1831
GluI GCNGC 8 cut(s) 147, 221, 318, 340, 357, 745, 1323, 1503
GsaI CCCAGC 1 cut(s) 423
HaeIII GGCC 3 cut(s) 631, 691, 782
HapII CCGG 4 cut(s) 350, 492, 703, 1099
Hin1II CATG 7 cut(s) 419, 489, 1039, 1345, 1408, 1473, 1628
HincII GTYRAC 2 cut(s) 589, 1126
HindII GTYRAC 2 cut(s) 589, 1126
HindIII AAGCTT 1 cut(s) 1554
HinfI GANTC 7 cut(s) 5, 305, 933, 1356, 1434, 1452, 1739
HpaI GTTAAC 1 cut(s) 1126
HpaII CCGG 4 cut(s) 350, 492, 703, 1099
HphI GGTGA 1 cut(s) 219
Hpy166II GTNNAC 3 cut(s) 589, 596, 1126
Hpy188I TCNGA 6 cut(s) 10, 658, 1433, 1448, 1738, 1783
Hpy8I GTNNAC 3 cut(s) 589, 596, 1126
Hpy99I CGWCG 1 cut(s) 912
HpyAV CCTTC 5 cut(s) 35, 620, 884, 1002, 1184
HpyCH4III ACNGT 9 cut(s) 163, 293, 593, 608, 1077, 1279, 1543, 1594, 1618
HpyCH4IV ACGT 1 cut(s) 1808
HpyF10VI GCNNNNNNNGC 8 cut(s) 416, 421, 1099, 1343, 1475, 1508, 1553, 1683
HpyF3I CTNAG 7 cut(s) 129, 455, 633, 647, 973, 1184, 1780
HpySE526I ACGT 1 cut(s) 1808
Hsp92II CATG 7 cut(s) 419, 489, 1039, 1345, 1408, 1473, 1628
Kpn2I TCCGGA 2 cut(s) 349, 491
KroI GCCGGC 1 cut(s) 1098
KroNI GCCGGC 1 cut(s) 1100
KspAI GTTAAC 1 cut(s) 1126
Kzo9I GATC 2 cut(s) 403, 580
LmnI GCTCC 4 cut(s) 91, 1291, 1299, 1370
Lsp1109I GCAGC 7 cut(s) 133, 304, 351, 368, 756, 1309, 1489
LweI GCATC 4 cut(s) 186, 607, 735, 876
MaeI CTAG 6 cut(s) 333, 980, 1002, 1166, 1329, 1831
MaeII ACGT 1 cut(s) 1808
MaeIII GTNAC 6 cut(s) 365, 608, 1243, 1534, 1594, 1809
MalI GATC 2 cut(s) 405, 582
MboI GATC 2 cut(s) 403, 580
MfeI CAATTG 1 cut(s) 1665
MhlI GDGCHC 3 cut(s) 550, 1162, 1296
MlsI TGGCCA 1 cut(s) 691
MluNI TGGCCA 1 cut(s) 691
MmeI TCCRAC 2 cut(s) 618, 1289
Mox20I TGGCCA 1 cut(s) 691
Mph1103I ATGCAT 1 cut(s) 622
MroI TCCGGA 2 cut(s) 349, 491
MroNI GCCGGC 1 cut(s) 1098
MroXI GAANNNNTTC 2 cut(s) 903, 1732
MscI TGGCCA 1 cut(s) 691
MseI TTAA 7 cut(s) 324, 447, 810, 879, 1062, 1125, 1803
MslI CAYNNNNRTG 4 cut(s) 1034, 1048, 1403, 1468
Msp20I TGGCCA 1 cut(s) 691
MspA1I CMGCKG 1 cut(s) 128
MspI CCGG 4 cut(s) 350, 492, 703, 1099
MunI CAATTG 1 cut(s) 1665
Mva1269I GAATGC 1 cut(s) 565
MvnI CGCG 3 cut(s) 538, 912, 1384
MwoI GCNNNNNNNGC 8 cut(s) 416, 421, 1099, 1343, 1475, 1508, 1553, 1683
NaeI GCCGGC 1 cut(s) 1100
NcoI CCATGG 1 cut(s) 1341
NdeII GATC 2 cut(s) 403, 580
NgoMIV GCCGGC 1 cut(s) 1098
NlaIII CATG 7 cut(s) 419, 489, 1039, 1345, 1408, 1473, 1628
NlaIV GGNNCC 3 cut(s) 1366, 1712, 1729
NmeAIII GCCGAG 1 cut(s) 758
NmuCI GTSAC 2 cut(s) 365, 1594
NruI TCGCGA 1 cut(s) 912
NsiI ATGCAT 1 cut(s) 622
NspI RCATGY 2 cut(s) 419, 1628
NspV TTCGAA 1 cut(s) 931
PaeI GCATGC 2 cut(s) 419, 1628
PagI TCATGA 1 cut(s) 1035
PcsI WCGNNNNNNNCGW 1 cut(s) 785
PctI GAATGC 1 cut(s) 565
PdiI GCCGGC 1 cut(s) 1100
PdmI GAANNNNTTC 2 cut(s) 903, 1732
PfeI GAWTC 7 cut(s) 5, 305, 933, 1356, 1434, 1452, 1739
PflFI GACNNNGTC 1 cut(s) 487
PflMI CCANNNNNTGG 2 cut(s) 1347, 1496
PkrI GCNGC 8 cut(s) 148, 222, 319, 341, 358, 746, 1324, 1504
Psp124BI GAGCTC 1 cut(s) 1296
Psp1406I AACGTT 1 cut(s) 1808
PspFI CCCAGC 1 cut(s) 419
PspN4I GGNNCC 3 cut(s) 1366, 1712, 1729
PspPI GGNCC 3 cut(s) 489, 629, 1193
PsyI GACNNNGTC 1 cut(s) 487
PvuII CAGCTG 1 cut(s) 128
RruI TCGCGA 1 cut(s) 912
RsaI GTAC 3 cut(s) 577, 1028, 1523
RsaNI GTAC 3 cut(s) 576, 1027, 1522
RseI CAYNNNNRTG 4 cut(s) 1034, 1048, 1403, 1468
SacI GAGCTC 1 cut(s) 1296
SaqAI TTAA 7 cut(s) 324, 447, 810, 879, 1062, 1125, 1803
SatI GCNGC 8 cut(s) 147, 221, 318, 340, 357, 745, 1323, 1503
Sau3AI GATC 2 cut(s) 403, 580
Sau96I GGNCC 3 cut(s) 489, 629, 1193
SduI GDGCHC 3 cut(s) 550, 1162, 1296
SfaNI GCATC 4 cut(s) 186, 607, 735, 876
SfcI CTRYAG 1 cut(s) 1542
SfuI TTCGAA 1 cut(s) 931
SinI GGWCC 2 cut(s) 489, 1193
SmiMI CAYNNNNRTG 4 cut(s) 1034, 1048, 1403, 1468
SmlI CTYRAG 2 cut(s) 1055, 1551
SmoI CTYRAG 2 cut(s) 1055, 1551
SphI GCATGC 2 cut(s) 419, 1628
SsiI CCGC 4 cut(s) 221, 536, 600, 1384
SspI AATATT 1 cut(s) 1200
SspMI CTAG 6 cut(s) 333, 980, 1002, 1166, 1329, 1831
SstI GAGCTC 1 cut(s) 1296
StyI CCWWGG 3 cut(s) 733, 1341, 1360
TaaI ACNGT 9 cut(s) 163, 293, 593, 608, 1077, 1279, 1543, 1594, 1618
TaiI ACGT 1 cut(s) 1811
TaqI TCGA 3 cut(s) 78, 931, 1526
TatI WGTACW 1 cut(s) 575
TauI GCSGC 1 cut(s) 223
TfiI GAWTC 7 cut(s) 5, 305, 933, 1356, 1434, 1452, 1739
Tru1I TTAA 7 cut(s) 324, 447, 810, 879, 1062, 1125, 1803
Tru9I TTAA 7 cut(s) 324, 447, 810, 879, 1062, 1125, 1803
TscAI CASTG 4 cut(s) 692, 1082, 1428, 1603
TseFI GTSAC 2 cut(s) 365, 1594
TseI GCWGC 7 cut(s) 146, 317, 339, 356, 744, 1322, 1502
Tsp45I GTSAC 2 cut(s) 365, 1594
TspRI CASTG 4 cut(s) 692, 1082, 1428, 1603
Tth111I GACNNNGTC 1 cut(s) 487
Van91I CCANNNNNTGG 2 cut(s) 1347, 1496
VpaK11BI GGWCC 2 cut(s) 489, 1193
XapI RAATTY 7 cut(s) 30, 261, 297, 497, 791, 817, 1756
XceI RCATGY 2 cut(s) 419, 1628
XcmI CCANNNNNNNNNTGG 1 cut(s) 1721
XmnI GAANNNNTTC 2 cut(s) 903, 1732
XspI CTAG 6 cut(s) 333, 980, 1002, 1166, 1329, 1831
Zsp2I ATGCAT 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.