Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000402.1

Orthogroup ID

OG0000966

Physical Location & Seq

Genomic Coordinates Forward (+)

26784 .. 27209

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000402.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atgagtacggtggaaaattttattactaatcagcaatggaccttgcccaatgaattttcaatttcgtttccggttttggctgctgaaattcttcaaatcccactaccaattgaaccagaaaatgatgtattaatttgggagccttcaagctcagtcccaccttcaatttctaacaacctccatccagctctttggtacatcctcatggcaccaattctatgtcttgagcttaaaatctatgggcagtggatgtcaggaggcgaccgccggctctcaaaggtggcgaatcctgtgaaccatctctctattgttggcaactttgttggggcattgctaggagcatcaatgggactaaaagaaggaccaatattcttttttgctgttgggttggctcactacacggtcttatttgtaactttgtgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0006873 GO:0006950 GO:0006970 GO:0008150 GO:0008308 GO:0008509 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0015075 GO:0015103 GO:0015267 GO:0015318 GO:0015698 GO:0016020 GO:0019725 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0034220 GO:0042221 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071944 GO:0098656 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLAC1

Protein Analysis

141

Amino Acids

15.54

Weight (kDa)

4.93

Isoelectric Point (pI)

48.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27970 AT4G27970 AT4G27970 AT4G27970 AT4G27970 AT4G27970 AT5G24030 AT5G24030
fragaria_vesca	FvH4_7g30630 FvH4_7g30630 FvH4_7g30630 FvH4_7g30640 FvH4_7g30640 FvH4_7g30640 FvH4_7g30640
malus_domestica	MD01G1211400.v1.1 MD01G1211500.v1.1 MD07G1282100.v1.1
prunus_persica	Prupe.2G291700_v2.0.a1 Prupe.2G304200_v2.0.a1 Prupe.2G304300_v2.0.a1 Prupe.2G304300_v2.0.a1 Prupe.2G304300_v2.0.a1
pyrus_communis	pycom01g22190 pycom01g22200 pycom07g25600
rosa_chinensis	RchiOBHm_Chr1g0369441 RchiOBHm_Chr1g0379541 RchiOBHm_Chr1g0379571
rosa_laevigata	RLG00000026393 RLG00000026394 RLG00000027130
rosa_multiflora	Rmu_co8329679.1_g000001 Rmu_sc0000402.1_g000002 Rmu_sc0000402.1_g000005 Rmu_sc0001985.1_g000002 Rmu_sc0003612.1_g000018 Rmu_sc0024534.1_g000001
rosa_roxburghii	Rroxscaffold_4G00280080 Rroxscaffold_4G00280090 Rroxscaffold_4G00287650
rosa_rugosa	Rorug01G0350200 Rorug01G0350200 Rorug01G0413000
rosa_samantha	Rh1AG357900 Rh1AG435500 Rh1AG435600 Rh1BG322000 Rh1BG393100 Rh1BG393200 Rh1CG335700 Rh1CG405800 Rh1CG405900 Rh1DG352600 Rh1DG423900 Rh1DG424000
rosa_wichuraiana	Rw0G019950 Rw1G031570 Rw1G031580 Rw1G038040 Rw1G038050 Rw1G038070 Rw1G038080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	208
AciI	CCGC	1 cut(s)	265
AcsI	RAATTY	3 cut(s)	16, 53, 87
AfaI	GTAC	2 cut(s)	7, 197
AgsI	TTSAA	5 cut(s)	60, 95, 113, 147, 165
AluBI	AGCT	3 cut(s)	150, 188, 229
AluI	AGCT	3 cut(s)	150, 188, 229
ApeKI	GCWGC	1 cut(s)	80
ApoI	RAATTY	3 cut(s)	16, 53, 87
AseI	ATTAAT	1 cut(s)	131
Asp700I	GAANNNNTTC	1 cut(s)	90
AspS9I	GGNCC	2 cut(s)	39, 362
AvaII	GGWCC	2 cut(s)	39, 362
BanI	GGYRCC	1 cut(s)	208
BbvI	GCAGC	1 cut(s)	67
BccI	CCATC	2 cut(s)	189, 306
BfaI	CTAG	1 cut(s)	335
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
Bme18I	GGWCC	2 cut(s)	39, 362
BmgT120I	GGNCC	2 cut(s)	39, 362
BmiI	GGNNCC	2 cut(s)	141, 210
BmsI	GCATC	1 cut(s)	350
BpuEI	CTTGAG	1 cut(s)	245
BsaWI	WCCGGW	1 cut(s)	70
Bse118I	RCCGGY	1 cut(s)	267
Bse3DI	GCAATG	2 cut(s)	41, 329
BseGI	GGATG	3 cut(s)	181, 198, 255
BseMI	GCAATG	2 cut(s)	41, 329
BseMII	CTCAG	1 cut(s)	165
BseXI	GCAGC	1 cut(s)	67
Bsh1285I	CGRYCG	1 cut(s)	265
BshNI	GGYRCC	1 cut(s)	208
BsiEI	CGRYCG	1 cut(s)	265
BsiSI	CCGG	2 cut(s)	71, 268
BslFI	GGGAC	2 cut(s)	140, 363
BsmFI	GGGAC	2 cut(s)	140, 363
BspACI	CCGC	1 cut(s)	265
BspCNI	CTCAG	1 cut(s)	164
BspLI	GGNNCC	2 cut(s)	141, 210
BspT107I	GGYRCC	1 cut(s)	208
BsrDI	GCAATG	2 cut(s)	41, 329
BsrFI	RCCGGY	1 cut(s)	267
BssAI	RCCGGY	1 cut(s)	267
Bst4CI	ACNGT	2 cut(s)	10, 403
BstC8I	GCNNGC	1 cut(s)	269
BstDEI	CTNAG	1 cut(s)	151
BstF5I	GGATG	3 cut(s)	181, 198, 255
BstMCI	CGRYCG	1 cut(s)	265
BstV1I	GCAGC	1 cut(s)	67
BstXI	CCANNNNNNTGG	1 cut(s)	192
BtsCI	GGATG	3 cut(s)	181, 198, 255
BtsI	GCAGTG	1 cut(s)	251
BtsIMutI	CAGTG	1 cut(s)	251
Cac8I	GCNNGC	1 cut(s)	269
Cfr10I	RCCGGY	1 cut(s)	267
Cfr13I	GGNCC	2 cut(s)	39, 362
Csp6I	GTAC	2 cut(s)	6, 196
CviAII	CATG	1 cut(s)	205
CviJI	RGCY	7 cut(s)	80, 142, 150, 188, 229, 271, 392
CviKI_1	RGCY	7 cut(s)	80, 142, 150, 188, 229, 271, 392
CviQI	GTAC	2 cut(s)	6, 196
DdeI	CTNAG	1 cut(s)	151
Eco47I	GGWCC	2 cut(s)	39, 362
FaeI	CATG	1 cut(s)	208
FaiI	YATR	3 cut(s)	206, 220, 240
FaqI	GGGAC	2 cut(s)	140, 363
FatI	CATG	1 cut(s)	204
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	3 cut(s)	168, 185, 262
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	1 cut(s)	335
GluI	GCNGC	1 cut(s)	81
HapII	CCGG	2 cut(s)	71, 268
Hin1II	CATG	1 cut(s)	208
HinfI	GANTC	1 cut(s)	286
HpaII	CCGG	2 cut(s)	71, 268
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188III	TCNNGA	2 cut(s)	224, 255
Hpy8I	GTNNAC	1 cut(s)	295
HpyAV	CCTTC	3 cut(s)	153, 171, 353
HpyCH4III	ACNGT	2 cut(s)	10, 403
HpyF3I	CTNAG	1 cut(s)	151
Hsp92II	CATG	1 cut(s)	208
KroI	GCCGGC	1 cut(s)	267
KroNI	GCCGGC	1 cut(s)	269
LmnI	GCTCC	2 cut(s)	139, 338
LpnPI	CCDG	6 cut(s)	84, 129, 198, 240, 281, 303
Lsp1109I	GCAGC	1 cut(s)	67
LweI	GCATC	1 cut(s)	350
MaeI	CTAG	1 cut(s)	335
MaeIII	GTNAC	1 cut(s)	412
MboII	GAAGA	1 cut(s)	83
MfeI	CAATTG	1 cut(s)	108
MluCI	AATT	8 cut(s)	16, 53, 60, 87, 108, 132, 165, 213
MnlI	CCTC	3 cut(s)	188, 212, 251
MroNI	GCCGGC	1 cut(s)	267
MroXI	GAANNNNTTC	1 cut(s)	90
MseI	TTAA	2 cut(s)	131, 231
MslI	CAYNNNNRTG	1 cut(s)	203
MspI	CCGG	2 cut(s)	71, 268
MunI	CAATTG	1 cut(s)	108
NaeI	GCCGGC	1 cut(s)	269
NgoMIV	GCCGGC	1 cut(s)	267
NlaIII	CATG	1 cut(s)	208
NlaIV	GGNNCC	2 cut(s)	141, 210
PdiI	GCCGGC	1 cut(s)	269
PdmI	GAANNNNTTC	1 cut(s)	90
PfeI	GAWTC	1 cut(s)	286
PkrI	GCNGC	1 cut(s)	82
PshBI	ATTAAT	1 cut(s)	131
PspN4I	GGNNCC	2 cut(s)	141, 210
PspPI	GGNCC	2 cut(s)	39, 362
RsaI	GTAC	2 cut(s)	7, 197
RsaNI	GTAC	2 cut(s)	6, 196
RseI	CAYNNNNRTG	1 cut(s)	203
SaqAI	TTAA	2 cut(s)	131, 231
SatI	GCNGC	1 cut(s)	81
Sau96I	GGNCC	2 cut(s)	39, 362
SetI	ASST	7 cut(s)	44, 152, 163, 180, 190, 231, 282
SfaNI	GCATC	1 cut(s)	350
SinI	GGWCC	2 cut(s)	39, 362
SmiMI	CAYNNNNRTG	1 cut(s)	203
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	8 cut(s)	16, 53, 60, 87, 108, 132, 165, 213
SsiI	CCGC	1 cut(s)	265
SspI	AATATT	1 cut(s)	369
SspMI	CTAG	1 cut(s)	335
TaaI	ACNGT	2 cut(s)	10, 403
TasI	AATT	8 cut(s)	16, 53, 60, 87, 108, 132, 165, 213
TfiI	GAWTC	1 cut(s)	286
Tru1I	TTAA	2 cut(s)	131, 231
Tru9I	TTAA	2 cut(s)	131, 231
TscAI	CASTG	1 cut(s)	251
TseI	GCWGC	1 cut(s)	80
TspDTI	ATGAA	1 cut(s)	66
TspRI	CASTG	1 cut(s)	251
VpaK11BI	GGWCC	2 cut(s)	39, 362
VspI	ATTAAT	1 cut(s)	131
XapI	RAATTY	3 cut(s)	16, 53, 87
XmnI	GAANNNNTTC	1 cut(s)	90
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.