Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00898

Orthogroup ID

OG0000966

Physical Location & Seq

Genomic Coordinates Forward (+)

26790 .. 28232

Gene Structure 1443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G019950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGGGTCTGAAGAACATGTTTGCCTTCAAATTCCTTCTCCTATCAAATACATATCATCAAATGAAGTGGTTCGGTTTGATAACGTTAAGGAGCATACCTTTTTCAATGACAAGCATCAGCTAACTGACCCATCAGCTAAGAAAACTGAGATGGCTGCTATGATATCTCTTAGCATGCCACCATCGCCAGCGGAAATTCAGTTACAGAACAAAAAACAAGTGCCCTTCAGCCCTGAAACAAATTTCAACAATGGAATTCCAGATTCTAATTCTGCCGCAACTAAGCGTGCTAGTAGCAGCCAACTACCGGAAGAAGCAGAATTTCACTCTCAGGCCCAATCAAAAATCTCTGCATTTGAAGATCAAGCAATTCAAATAGGGCATTGTCCTTATCAACCAAGTATTGAAAGATTGAAAGATAAGAGGTTTGATAATTTCAAGACATGGTCTGGGAAACTTGAAAGGCAGATATCACTAGCTTCACTACTACGGGGAAAGCCACCAAGAAAAAGTGATCAACCAGAGAATGCTTCTGTGCAAAGTACAGATCAAGTTGACCCTTTACCTGCAGACAGATACTTTGATGCATTGGAAGGGCCTGAGTTGGACACCCTTAGGGCTTCAGAGGAAATTCTGCTTCCAGAAGATAAGAAGTGGCCATTTCTTCTCCGGTATCCCATTTCTTCATTTAGCATCTGTCTTGGTGTTAGCAGCCAAGCTATTTTGTGGAAAACCCTGCCTATCTCTGCCTCCACAAAATTTCTCCACTTGAGCTTAACACCAAATTTGGTTCTCTGGTTCATTTCTCTTGCTCTATTAGTTATTGTTGCTTGCATCTACATTCTTAAAATCATCTTCTACTTTGAAGCAGTTCGTCGTGAGTATTACCATCCAATCCGAATCAACTTCTTCTTTTCCCCATTTATAGCCCTTTTGTTCACAGCTCTTGGAGTCCCACCTTCAATTTCTAACAACCTCCATCCAGCTCTTTGGTACATCCTCATGGCACCAATTCTATGTCTTGAGCTTAAAATCTATGGGCAGTGGATGTCAGGAGGCGACCGCCGGCTCTCAAAGGTGGCGAATCCTGTGAACCATCTCTCTATTGTTGGCAACTTTGTTGGGGCATTGCTAGGAGCATCAATGGGACTAAAAGAAGGACCAATATTCTTTTTTGCTGTTGGGTTGGCTCACTACACG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0006873 GO:0006950 GO:0006970 GO:0008150 GO:0008308 GO:0008509 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0015075 GO:0015103 GO:0015267 GO:0015318 GO:0015698 GO:0016020 GO:0019725 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0034220 GO:0042221 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071944 GO:0098656 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLAC1

Protein Analysis

400

Amino Acids

44.9

Weight (kDa)

7.14

Isoelectric Point (pI)

53.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SLAC1	PF03595	225 - 399	4.7e-20	Voltage-dependent anion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27970 AT4G27970 AT4G27970 AT4G27970 AT4G27970 AT4G27970 AT5G24030 AT5G24030
fragaria_vesca	FvH4_7g30630 FvH4_7g30630 FvH4_7g30630 FvH4_7g30640 FvH4_7g30640 FvH4_7g30640 FvH4_7g30640
malus_domestica	MD01G1211400.v1.1 MD01G1211500.v1.1 MD07G1282100.v1.1
prunus_persica	Prupe.2G291700_v2.0.a1 Prupe.2G304200_v2.0.a1 Prupe.2G304300_v2.0.a1 Prupe.2G304300_v2.0.a1 Prupe.2G304300_v2.0.a1
pyrus_communis	pycom01g22190 pycom01g22200 pycom07g25600
rosa_chinensis	RchiOBHm_Chr1g0369441 RchiOBHm_Chr1g0379541 RchiOBHm_Chr1g0379571
rosa_laevigata	RLG00000026393 RLG00000026394 RLG00000027130
rosa_multiflora	Rmu_co8329679.1_g000001 Rmu_sc0000402.1_g000002 Rmu_sc0000402.1_g000005 Rmu_sc0001985.1_g000002 Rmu_sc0003612.1_g000018 Rmu_sc0024534.1_g000001
rosa_roxburghii	Rroxscaffold_4G00280080 Rroxscaffold_4G00280090 Rroxscaffold_4G00287650
rosa_rugosa	Rorug01G0350200 Rorug01G0350200 Rorug01G0413000
rosa_samantha	Rh1AG357900 Rh1AG435500 Rh1AG435600 Rh1BG322000 Rh1BG393100 Rh1BG393200 Rh1CG335700 Rh1CG405800 Rh1CG405900 Rh1DG352600 Rh1DG423900 Rh1DG424000
rosa_wichuraiana	Rw0G019950 Rw1G031570 Rw1G031580 Rw1G038040 Rw1G038050 Rw1G038070 Rw1G038080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	574
AccB1I	GGYRCC	1 cut(s)	1006
AciI	CCGC	3 cut(s)	191, 276, 1063
AclI	AACGTT	1 cut(s)	84
AcoI	YGGCCR	1 cut(s)	656
AcsI	RAATTY	8 cut(s)	30, 195, 241, 255, 320, 630, 758, 784
AcuI	CTGAAG	3 cut(s)	30, 211, 606
AfaI	GTAC	2 cut(s)	544, 995
AfiI	CCNNNNNNNGG	1 cut(s)	307
AflIII	ACRYGT	1 cut(s)	16
AluBI	AGCT	8 cut(s)	121, 137, 479, 719, 774, 944, 986, 1027
AluI	AGCT	8 cut(s)	121, 137, 479, 719, 774, 944, 986, 1027
AoxI	GGCC	3 cut(s)	333, 596, 656
ApeKI	GCWGC	3 cut(s)	155, 297, 711
ApoI	RAATTY	8 cut(s)	30, 195, 241, 255, 320, 630, 758, 784
ArsI	GACNNNNNNTTYG	2 cut(s)	563, 595
Asp700I	GAANNNNTTC	2 cut(s)	69, 870
AspS9I	GGNCC	3 cut(s)	334, 596, 1160
AvaII	GGWCC	1 cut(s)	1160
AxyI	CCTNAGG	1 cut(s)	614
BaeGI	GKGCMC	1 cut(s)	225
BalI	TGGCCA	1 cut(s)	658
BanI	GGYRCC	1 cut(s)	1006
BbvI	GCAGC	3 cut(s)	142, 309, 723
BccI	CCATC	6 cut(s)	139, 145, 190, 897, 987, 1104
BciVI	GTATCC	1 cut(s)	684
BclI	TGATCA	1 cut(s)	514
BfaI	CTAG	3 cut(s)	291, 476, 1133
BfmI	CTRYAG	1 cut(s)	567
BfuAI	ACCTGC	1 cut(s)	574
BfuI	GTATCC	1 cut(s)	684
BisI	GCNGC	4 cut(s)	156, 276, 298, 712
BlsI	GCNGC	4 cut(s)	157, 277, 299, 713
Bme18I	GGWCC	1 cut(s)	1160
BmgT120I	GGNCC	3 cut(s)	334, 596, 1160
BmiI	GGNNCC	1 cut(s)	1008
BmsI	GCATC	5 cut(s)	124, 574, 702, 843, 1148
BpuEI	CTTGAG	2 cut(s)	790, 1043
BsaWI	WCCGGW	2 cut(s)	307, 669
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
Bse118I	RCCGGY	1 cut(s)	1065
Bse21I	CCTNAGG	1 cut(s)	614
Bse3DI	GCAATG	1 cut(s)	1127
BseGI	GGATG	4 cut(s)	889, 979, 996, 1053
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseMI	GCAATG	1 cut(s)	1127
BseMII	CTCAG	3 cut(s)	138, 344, 591
BseSI	GKGCMC	1 cut(s)	225
BseXI	GCAGC	3 cut(s)	142, 309, 723
Bsh1285I	CGRYCG	1 cut(s)	1063
BshFI	GGCC	3 cut(s)	335, 598, 658
BshNI	GGYRCC	1 cut(s)	1006
BsiEI	CGRYCG	1 cut(s)	1063
BsiSI	CCGG	3 cut(s)	308, 670, 1066
BslFI	GGGAC	2 cut(s)	938, 1161
BslI	CCNNNNNNNGG	1 cut(s)	307
BsmFI	GGGAC	2 cut(s)	938, 1161
BsmI	GAATGC	1 cut(s)	532
BsnI	GGCC	3 cut(s)	335, 598, 658
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	3 cut(s)	361, 514, 547
BspACI	CCGC	3 cut(s)	191, 276, 1063
BspANI	GGCC	3 cut(s)	335, 598, 658
BspCNI	CTCAG	3 cut(s)	139, 343, 592
BspLI	GGNNCC	1 cut(s)	1008
BspMAI	CTGCAG	1 cut(s)	571
BspMI	ACCTGC	1 cut(s)	574
BspT107I	GGYRCC	1 cut(s)	1006
BsrDI	GCAATG	1 cut(s)	1127
BsrFI	RCCGGY	1 cut(s)	1065
BssAI	RCCGGY	1 cut(s)	1065
BssMI	GATC	3 cut(s)	361, 514, 547
BstC8I	GCNNGC	5 cut(s)	176, 189, 288, 832, 1067
BstDEI	CTNAG	7 cut(s)	138, 147, 170, 282, 330, 600, 614
BstF5I	GGATG	4 cut(s)	889, 979, 996, 1053
BstKTI	GATC	3 cut(s)	364, 517, 550
BstMBI	GATC	3 cut(s)	361, 514, 547
BstMCI	CGRYCG	1 cut(s)	1063
BstMWI	GCNNNNNNNGC	1 cut(s)	184
BstNSI	RCATGY	2 cut(s)	20, 178
BstSFI	CTRYAG	1 cut(s)	567
BstSLI	GKGCMC	1 cut(s)	225
BstV1I	GCAGC	3 cut(s)	142, 309, 723
BstXI	CCANNNNNNTGG	1 cut(s)	990
Bsu36I	CCTNAGG	1 cut(s)	614
BsuI	GTATCC	1 cut(s)	684
BsuRI	GGCC	3 cut(s)	335, 598, 658
BtgZI	GCGATG	1 cut(s)	168
BtsCI	GGATG	4 cut(s)	889, 979, 996, 1053
BtsI	GCAGTG	1 cut(s)	1049
BtsIMutI	CAGTG	1 cut(s)	1049
BveI	ACCTGC	1 cut(s)	574
Cac8I	GCNNGC	5 cut(s)	176, 189, 288, 832, 1067
Cfr10I	RCCGGY	1 cut(s)	1065
Cfr13I	GGNCC	3 cut(s)	334, 596, 1160
Csp6I	GTAC	2 cut(s)	543, 994
CspCI	CAANNNNNGTGG	2 cut(s)	48, 83
CviAII	CATG	4 cut(s)	17, 175, 444, 1003
CviQI	GTAC	2 cut(s)	543, 994
DdeI	CTNAG	7 cut(s)	138, 147, 170, 282, 330, 600, 614
DpnI	GATC	3 cut(s)	363, 516, 549
DpnII	GATC	3 cut(s)	361, 514, 547
EaeI	YGGCCR	1 cut(s)	656
Eco32I	GATATC	2 cut(s)	165, 471
Eco47I	GGWCC	1 cut(s)	1160
Eco57I	CTGAAG	3 cut(s)	30, 211, 606
Eco81I	CCTNAGG	1 cut(s)	614
EcoO109I	RGGNCCY	1 cut(s)	596
EcoRI	GAATTC	1 cut(s)	255
EcoRV	GATATC	2 cut(s)	165, 471
EcoT22I	ATGCAT	1 cut(s)	589
FaeI	CATG	4 cut(s)	20, 178, 447, 1006
FaqI	GGGAC	2 cut(s)	938, 1161
FatI	CATG	4 cut(s)	16, 174, 443, 1002
FbaI	TGATCA	1 cut(s)	514
Fnu4HI	GCNGC	4 cut(s)	156, 276, 298, 712
FokI	GGATG	4 cut(s)	876, 966, 983, 1060
Fsp4HI	GCNGC	4 cut(s)	156, 276, 298, 712
FspBI	CTAG	3 cut(s)	291, 476, 1133
GluI	GCNGC	4 cut(s)	156, 276, 298, 712
HaeIII	GGCC	3 cut(s)	335, 598, 658
HapII	CCGG	3 cut(s)	308, 670, 1066
Hin1II	CATG	4 cut(s)	20, 178, 447, 1006
HincII	GTYRAC	1 cut(s)	556
HindII	GTYRAC	1 cut(s)	556
HinfI	GANTC	4 cut(s)	263, 900, 951, 1084
HpaII	CCGG	3 cut(s)	308, 670, 1066
Hpy166II	GTNNAC	3 cut(s)	556, 939, 1093
Hpy188I	TCNGA	3 cut(s)	10, 625, 899
Hpy188III	TCNNGA	6 cut(s)	260, 439, 641, 878, 1022, 1053
Hpy8I	GTNNAC	3 cut(s)	556, 939, 1093
Hpy99I	CGWCG	1 cut(s)	879
HpyAV	CCTTC	6 cut(s)	35, 45, 235, 587, 969, 1151
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	5 cut(s)	353, 538, 569, 587, 834
HpyF10VI	GCNNNNNNNGC	1 cut(s)	184
HpyF3I	CTNAG	7 cut(s)	138, 147, 170, 282, 330, 600, 614
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	4 cut(s)	20, 178, 447, 1006
KroI	GCCGGC	1 cut(s)	1065
KroNI	GCCGGC	1 cut(s)	1067
Ksp22I	TGATCA	1 cut(s)	514
Kzo9I	GATC	3 cut(s)	361, 514, 547
LmnI	GCTCC	2 cut(s)	91, 1136
Lsp1109I	GCAGC	3 cut(s)	142, 309, 723
LweI	GCATC	5 cut(s)	124, 574, 702, 843, 1148
MaeI	CTAG	3 cut(s)	291, 476, 1133
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	201
MalI	GATC	3 cut(s)	363, 516, 549
MboI	GATC	3 cut(s)	361, 514, 547
MboII	GAAGA	8 cut(s)	23, 323, 371, 656, 656, 675, 847, 901
MhlI	GDGCHC	1 cut(s)	225
MlsI	TGGCCA	1 cut(s)	658
MluNI	TGGCCA	1 cut(s)	658
MlyI	GAGTC	1 cut(s)	960
MmeI	TCCRAC	1 cut(s)	585
MnlI	CCTC	6 cut(s)	417, 619, 760, 986, 1010, 1049
Mox20I	TGGCCA	1 cut(s)	658
Mph1103I	ATGCAT	1 cut(s)	589
MroNI	GCCGGC	1 cut(s)	1065
MroXI	GAANNNNTTC	2 cut(s)	69, 870
MscI	TGGCCA	1 cut(s)	658
MseI	TTAA	4 cut(s)	87, 776, 846, 1029
MslI	CAYNNNNRTG	1 cut(s)	1001
Msp20I	TGGCCA	1 cut(s)	658
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	3 cut(s)	308, 670, 1066
Mva1269I	GAATGC	1 cut(s)	532
MwoI	GCNNNNNNNGC	1 cut(s)	184
NaeI	GCCGGC	1 cut(s)	1067
NdeII	GATC	3 cut(s)	361, 514, 547
NgoMIV	GCCGGC	1 cut(s)	1065
NlaIII	CATG	4 cut(s)	20, 178, 447, 1006
NlaIV	GGNNCC	1 cut(s)	1008
NsiI	ATGCAT	1 cut(s)	589
NspI	RCATGY	2 cut(s)	20, 178
PaeI	GCATGC	1 cut(s)	178
PciI	ACATGT	1 cut(s)	16
PctI	GAATGC	1 cut(s)	532
PdiI	GCCGGC	1 cut(s)	1067
PdmI	GAANNNNTTC	2 cut(s)	69, 870
PfeI	GAWTC	3 cut(s)	263, 900, 1084
PflFI	GACNNNGTC	1 cut(s)	445
PkrI	GCNGC	4 cut(s)	157, 277, 299, 713
PleI	GAGTC	1 cut(s)	959
PpsI	GAGTC	1 cut(s)	959
PscI	ACATGT	1 cut(s)	16
Psp1406I	AACGTT	1 cut(s)	84
PspN4I	GGNNCC	1 cut(s)	1008
PspPI	GGNCC	3 cut(s)	334, 596, 1160
PstI	CTGCAG	1 cut(s)	571
PsyI	GACNNNGTC	1 cut(s)	445
RsaI	GTAC	2 cut(s)	544, 995
RsaNI	GTAC	2 cut(s)	543, 994
RseI	CAYNNNNRTG	1 cut(s)	1001
SaqAI	TTAA	4 cut(s)	87, 776, 846, 1029
SatI	GCNGC	4 cut(s)	156, 276, 298, 712
Sau3AI	GATC	3 cut(s)	361, 514, 547
Sau96I	GGNCC	3 cut(s)	334, 596, 1160
SchI	GAGTC	1 cut(s)	960
SduI	GDGCHC	1 cut(s)	225
SfaNI	GCATC	5 cut(s)	124, 574, 702, 843, 1148
SfcI	CTRYAG	1 cut(s)	567
SinI	GGWCC	1 cut(s)	1160
SmiMI	CAYNNNNRTG	1 cut(s)	1001
SmlI	CTYRAG	2 cut(s)	769, 1022
SmoI	CTYRAG	2 cut(s)	769, 1022
SphI	GCATGC	1 cut(s)	178
SsiI	CCGC	3 cut(s)	191, 276, 1063
SspI	AATATT	1 cut(s)	1167
SspMI	CTAG	3 cut(s)	291, 476, 1133
TaiI	ACGT	1 cut(s)	87
TatI	WGTACW	1 cut(s)	542
TauI	GCSGC	1 cut(s)	278
TfiI	GAWTC	3 cut(s)	263, 900, 1084
Tru1I	TTAA	4 cut(s)	87, 776, 846, 1029
Tru9I	TTAA	4 cut(s)	87, 776, 846, 1029
TscAI	CASTG	1 cut(s)	1049
TseI	GCWGC	3 cut(s)	155, 297, 711
TspDTI	ATGAA	3 cut(s)	78, 675, 790
TspRI	CASTG	1 cut(s)	1049
Tth111I	GACNNNGTC	1 cut(s)	445
VpaK11BI	GGWCC	1 cut(s)	1160
XapI	RAATTY	8 cut(s)	30, 195, 241, 255, 320, 630, 758, 784
XceI	RCATGY	2 cut(s)	20, 178
XmnI	GAANNNNTTC	2 cut(s)	69, 870
XspI	CTAG	3 cut(s)	291, 476, 1133
Zsp2I	ATGCAT	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.