Rh1AG435600

S-type anion channel

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
66059989 .. 66061721
1733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG435600.1

Sequence Viewer

Length: 1503 bp
ATGGATTCTGAAGAACAGGTTTCCCTTCAAATTCCATCTCTCATCAAATACATATCCTCTAATGAAGTGGTTGGTTTCGATAATGTTGAGGAGCATACCATTCTCAATGATAAGCCTCAACCATCAGCTGAGGAAATTGAGATAGCTGCTTTAGAAAGCACAGTTGATGAATATGAACCACCAATTCATCAAAGGATGCACTCTGTTTCTATTAGTATGCCGCCATCACCCGTGGAAGTTCATTTAGAGAAAATAAAAGGATTTCTCTTCAGTCCTGAAACAATTTTCAACGGTGGAATTCCAGATTCTTCTTCTGCTGCAATTAAGAGTGCTAGTAGCAGCAAACTTCCGGAAGCAGCAAAGTGTCACTCTCAACCCTTGCCAAAAGGCTCTGCATTTGAAGATCAGGCAACGCACGCTGGGCATTTCCCCTATCATCCAAGTATTAAAACGCTGAGAGATAACAGGTTTGATAATTTCAAGACATGGTCCGGGAAATTTGAAAGGCAGATAACACTACTACGGGGAAAGACACCGCGAAAAAGTGATCAACCAGAAAATGCTTTTGCTCAAAGTACAGATCAAGTTGACCGTTTACCTGCAGACCGTTACTTTGATGCATTGGAAGGGCCTGAGTTGGACACTCTTAGGGCTTCAGAGGAAATAATGCTTCCAGAGGACAAGCAGTGGCCATTTCTTCTCCGGTATCCCATTTCTTCATTTAGCATCTGCCTTGGTGTCAGCAGCCAAGCTATTTTGTGGAAAACCCTACCTACCTCGGCCTCCACGAAATTTCTCCACTTGAACCTTAAAACAAATTTGGTTCTGTGGTGCATTGCCGTTGCTACATTAGTTGGTGTTGCTTGCATCTACCTTCTTAAAATCATCTTTTACTTTGAAGCAGTTCGTCGCGAGTATTTCCACCCAATTCGAATCAACTTCTTCTTTTCCCCATTTATAGCCATCTTATTCTTAGCTCTAGGAGTGCCACCTTCCATTTCTAGCAACCTCCATCCAGCTCTCTGGTACATCCTCATGACCCCACTTTTATGTCTTGAGCTTAAAATCTATGGACAGTGGATGTCAGGAGGGCAACGCCGGCTTTCAAAAGTAGCCAATCCTGTTAACCATCTCTCCATTGTTGGCAACTTTGTGGGGGCTCTGCTAGGTGCTTCAATGGGACTAAGAGAAGGACCAATATTCTTCTTCGCAGTTGGGATGGCTCACTATATGGTCTTATTTGTAACTCTTTACCAGAGACTTCCAACAAATGAGACAGTAATCCCAAAGGAGCTCCATCCTGTGTTCTTTCTGTTTGTTGCTGCACCTAGCGTAGCTTCCATGGCTTGGGCAAGAATCCAAGGCTCCTTTGATTATGGCTCGCGGATTGCTTACTTCATCGCCATGTTCCTTTATCTCTCACTGGCAAGTACATATAACCTTCATCAATCAAGTTGCACCTATCAATGTCATCAAACATGCCTGACTATATATGTGGCATGA

Protein Analysis

500

Amino Acids

56.12

Weight (kDa)

6.35

Isoelectric Point (pI)

49.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SLAC1 PF03595 236 - 475 1.1e-31 Voltage-dependent anion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 607
AccB7I CCANNNNNTGG 1 cut(s) 1347
AccII CGCG 3 cut(s) 538, 912, 1384
AccIII TCCGGA 1 cut(s) 349
AciI CCGC 3 cut(s) 221, 536, 1384
AcoI YGGCCR 1 cut(s) 689
AcsI RAATTY 5 cut(s) 30, 297, 497, 791, 817
AcuI CTGAAG 3 cut(s) 30, 253, 639
AfaI GTAC 3 cut(s) 577, 1028, 1432
AfiI CCNNNNNNNGG 1 cut(s) 1347
AgsI TTSAA 9 cut(s) 29, 289, 401, 481, 503, 805, 899, 1107, 1176
AluBI AGCT 8 cut(s) 128, 146, 752, 977, 1019, 1060, 1294, 1337
AluI AGCT 8 cut(s) 128, 146, 752, 977, 1019, 1060, 1294, 1337
Alw21I GWGCWC 1 cut(s) 1296
Alw26I GTCTC 2 cut(s) 1252, 1268
Aor13HI TCCGGA 1 cut(s) 349
AoxI GGCC 3 cut(s) 629, 689, 780
ApeKI GCWGC 6 cut(s) 146, 317, 339, 356, 744, 1322
ApoI RAATTY 5 cut(s) 30, 297, 497, 791, 817
ArsI GACNNNNNNTTYG 2 cut(s) 596, 628
Asp700I GAANNNNTTC 1 cut(s) 903
AspS9I GGNCC 3 cut(s) 489, 629, 1193
AsuC2I CCSGG 1 cut(s) 493
AsuHPI GGTGA 1 cut(s) 219
AsuII TTCGAA 1 cut(s) 931
AvaII GGWCC 2 cut(s) 489, 1193
BalI TGGCCA 1 cut(s) 691
BanII GRGCYC 2 cut(s) 1162, 1296
Bbv12I GWGCWC 1 cut(s) 1296
BbvCI CCTCAGC 1 cut(s) 129
BbvI GCAGC 6 cut(s) 133, 304, 351, 368, 756, 1309
BccI CCATC 8 cut(s) 43, 130, 232, 971, 1020, 1137, 1213, 1305
BceAI ACGGC 1 cut(s) 824
BciVI GTATCC 1 cut(s) 717
BclI TGATCA 1 cut(s) 547
BcnI CCSGG 1 cut(s) 493
BcoDI GTCTC 2 cut(s) 1252, 1268
BfaI CTAG 5 cut(s) 333, 980, 1002, 1166, 1329
BfmI CTRYAG 1 cut(s) 600
BfuAI ACCTGC 1 cut(s) 607
BfuI GTATCC 1 cut(s) 717
BisI GCNGC 7 cut(s) 147, 221, 318, 340, 357, 745, 1323
BlsI GCNGC 7 cut(s) 148, 222, 319, 341, 358, 746, 1324
Bme1390I CCNGG 1 cut(s) 493
Bme18I GGWCC 2 cut(s) 489, 1193
BmgT120I GGNCC 3 cut(s) 489, 629, 1193
BmiI GGNNCC 1 cut(s) 1366
BmrFI CCNGG 1 cut(s) 493
BmsI GCATC 4 cut(s) 186, 607, 735, 876
Bpu10I CCTNAGC 1 cut(s) 129
Bpu14I TTCGAA 1 cut(s) 931
BpuEI CTTGAG 1 cut(s) 1076
BpuMI CCSGG 1 cut(s) 493
BsaJI CCNNGG 5 cut(s) 231, 733, 777, 1341, 1360
BsaWI WCCGGW 2 cut(s) 349, 702
BsaXI ACNNNNNCTCC 2 cut(s) 1118, 1148
Bsc4I CCNNNNNNNGG 1 cut(s) 1347
Bse118I RCCGGY 1 cut(s) 1098
Bse1I ACTGG 1 cut(s) 1428
Bse3DI GCAATG 1 cut(s) 834
BseAI TCCGGA 1 cut(s) 349
BseDI CCNNGG 5 cut(s) 231, 733, 777, 1341, 1360
BseGI GGATG 7 cut(s) 201, 436, 1012, 1029, 1086, 1224, 1297
BseLI CCNNNNNNNGG 1 cut(s) 1347
BseMI GCAATG 1 cut(s) 834
BseMII CTCAG 3 cut(s) 120, 446, 624
BseNI ACTGG 1 cut(s) 1428
BseRI GAGGAG 1 cut(s) 104
BseXI GCAGC 6 cut(s) 133, 304, 351, 368, 756, 1309
BseYI CCCAGC 1 cut(s) 419
BsgI GTGCAG 1 cut(s) 1308
Bsh1236I CGCG 3 cut(s) 538, 912, 1384
BshFI GGCC 3 cut(s) 631, 691, 782
BsiHKAI GWGCWC 1 cut(s) 1296
BsiSI CCGG 4 cut(s) 350, 492, 703, 1099
BslFI GGGAC 1 cut(s) 1194
BslI CCNNNNNNNGG 1 cut(s) 1347
BsmAI GTCTC 2 cut(s) 1252, 1268
BsmFI GGGAC 1 cut(s) 1194
BsnI GGCC 3 cut(s) 631, 691, 782
Bsp119I TTCGAA 1 cut(s) 931
Bsp1286I GDGCHC 2 cut(s) 1162, 1296
Bsp13I TCCGGA 1 cut(s) 349
Bsp143I GATC 3 cut(s) 403, 547, 580
Bsp19I CCATGG 1 cut(s) 1341
Bsp68I TCGCGA 1 cut(s) 912
BspACI CCGC 3 cut(s) 221, 536, 1384
BspANI GGCC 3 cut(s) 631, 691, 782
BspCNI CTCAG 3 cut(s) 121, 447, 625
BspEI TCCGGA 1 cut(s) 349
BspFNI CGCG 3 cut(s) 538, 912, 1384
BspHI TCATGA 1 cut(s) 1035
BspLI GGNNCC 1 cut(s) 1366
BspMAI CTGCAG 1 cut(s) 604
BspMI ACCTGC 1 cut(s) 607
BspT104I TTCGAA 1 cut(s) 931
BsrDI GCAATG 1 cut(s) 834
BsrFI RCCGGY 1 cut(s) 1098
BsrI ACTGG 1 cut(s) 1428
BssAI RCCGGY 1 cut(s) 1098
BssECI CCNNGG 5 cut(s) 231, 733, 777, 1341, 1360
BssMI GATC 3 cut(s) 403, 547, 580
BssT1I CCWWGG 3 cut(s) 733, 1341, 1360
Bst4CI ACNGT 6 cut(s) 163, 293, 593, 608, 1077, 1279
Bst6I CTCTTC 1 cut(s) 272
BstBI TTCGAA 1 cut(s) 931
BstC8I GCNNGC 4 cut(s) 417, 865, 1100, 1382
BstDEI CTNAG 6 cut(s) 129, 455, 633, 647, 973, 1184
BstDSI CCRYGG 2 cut(s) 231, 1341
BstF5I GGATG 7 cut(s) 201, 436, 1012, 1029, 1086, 1224, 1297
BstFNI CGCG 3 cut(s) 538, 912, 1384
BstKTI GATC 3 cut(s) 406, 550, 583
BstMAI GTCTC 2 cut(s) 1252, 1268
BstMBI GATC 3 cut(s) 403, 547, 580
BstMWI GCNNNNNNNGC 4 cut(s) 416, 421, 1099, 1343
BstNSI RCATGY 1 cut(s) 1482
BstSCI CCNGG 1 cut(s) 491
BstSFI CTRYAG 1 cut(s) 600
BstUI CGCG 3 cut(s) 538, 912, 1384
BstV1I GCAGC 6 cut(s) 133, 304, 351, 368, 756, 1309
BstXI CCANNNNNNTGG 1 cut(s) 1023
BsuI GTATCC 1 cut(s) 717
BsuRI GGCC 3 cut(s) 631, 691, 782
BtgI CCRYGG 2 cut(s) 231, 1341
BtgZI GCGATG 1 cut(s) 1384
BtsCI GGATG 7 cut(s) 201, 436, 1012, 1029, 1086, 1224, 1297
BtsI GCAGTG 1 cut(s) 692
BtsIMutI CAGTG 3 cut(s) 692, 1082, 1421
BtuMI TCGCGA 1 cut(s) 912
BveI ACCTGC 1 cut(s) 607
Cac8I GCNNGC 4 cut(s) 417, 865, 1100, 1382
CciI TCATGA 1 cut(s) 1035
Cfr10I RCCGGY 1 cut(s) 1098
Cfr13I GGNCC 3 cut(s) 489, 629, 1193
Csp6I GTAC 3 cut(s) 576, 1027, 1431
CviAII CATG 6 cut(s) 486, 1036, 1342, 1405, 1479, 1500
CviQI GTAC 3 cut(s) 576, 1027, 1431
DdeI CTNAG 6 cut(s) 129, 455, 633, 647, 973, 1184
DpnI GATC 3 cut(s) 405, 549, 582
DpnII GATC 3 cut(s) 403, 547, 580
EaeI YGGCCR 1 cut(s) 689
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
Ecl136II GAGCTC 1 cut(s) 1294
Eco130I CCWWGG 3 cut(s) 733, 1341, 1360
Eco24I GRGCYC 2 cut(s) 1162, 1296
Eco47I GGWCC 2 cut(s) 489, 1193
Eco53kI GAGCTC 1 cut(s) 1294
Eco57I CTGAAG 3 cut(s) 30, 253, 639
EcoICRI GAGCTC 1 cut(s) 1294
EcoO109I RGGNCCY 1 cut(s) 629
EcoRI GAATTC 1 cut(s) 297
EcoT14I CCWWGG 3 cut(s) 733, 1341, 1360
EcoT22I ATGCAT 1 cut(s) 622
EcoT38I GRGCYC 2 cut(s) 1162, 1296
ErhI CCWWGG 3 cut(s) 733, 1341, 1360
FaeI CATG 6 cut(s) 489, 1039, 1345, 1408, 1482, 1503
FaqI GGGAC 1 cut(s) 1194
FatI CATG 6 cut(s) 485, 1035, 1341, 1404, 1478, 1499
FbaI TGATCA 1 cut(s) 547
Fnu4HI GCNGC 7 cut(s) 147, 221, 318, 340, 357, 745, 1323
FokI GGATG 7 cut(s) 208, 423, 999, 1016, 1093, 1231, 1284
FriOI GRGCYC 2 cut(s) 1162, 1296
Fsp4HI GCNGC 7 cut(s) 147, 221, 318, 340, 357, 745, 1323
FspBI CTAG 5 cut(s) 333, 980, 1002, 1166, 1329
GluI GCNGC 7 cut(s) 147, 221, 318, 340, 357, 745, 1323
GsaI CCCAGC 1 cut(s) 423
HaeIII GGCC 3 cut(s) 631, 691, 782
HapII CCGG 4 cut(s) 350, 492, 703, 1099
Hin1II CATG 6 cut(s) 489, 1039, 1345, 1408, 1482, 1503
HincII GTYRAC 2 cut(s) 589, 1126
HindII GTYRAC 2 cut(s) 589, 1126
HinfI GANTC 4 cut(s) 5, 305, 933, 1356
HpaI GTTAAC 1 cut(s) 1126
HpaII CCGG 4 cut(s) 350, 492, 703, 1099
HphI GGTGA 1 cut(s) 219
Hpy166II GTNNAC 3 cut(s) 589, 596, 1126
Hpy188I TCNGA 2 cut(s) 10, 658
Hpy188III TCNNGA 9 cut(s) 275, 302, 350, 481, 674, 911, 1036, 1055, 1086
Hpy8I GTNNAC 3 cut(s) 589, 596, 1126
Hpy99I CGWCG 1 cut(s) 912
HpyAV CCTTC 6 cut(s) 35, 620, 884, 1002, 1184, 1451
HpyCH4III ACNGT 6 cut(s) 163, 293, 593, 608, 1077, 1279
HpyCH4V TGCA 9 cut(s) 199, 320, 395, 602, 620, 834, 867, 1325, 1458
HpyF10VI GCNNNNNNNGC 4 cut(s) 416, 421, 1099, 1343
HpyF3I CTNAG 6 cut(s) 129, 455, 633, 647, 973, 1184
Hsp92II CATG 6 cut(s) 489, 1039, 1345, 1408, 1482, 1503
Kpn2I TCCGGA 1 cut(s) 349
KroI GCCGGC 1 cut(s) 1098
KroNI GCCGGC 1 cut(s) 1100
Ksp22I TGATCA 1 cut(s) 547
KspAI GTTAAC 1 cut(s) 1126
Kzo9I GATC 3 cut(s) 403, 547, 580
LmnI GCTCC 4 cut(s) 91, 1291, 1299, 1370
Lsp1109I GCAGC 6 cut(s) 133, 304, 351, 368, 756, 1309
LweI GCATC 4 cut(s) 186, 607, 735, 876
MaeI CTAG 5 cut(s) 333, 980, 1002, 1166, 1329
MaeIII GTNAC 3 cut(s) 365, 608, 1243
MalI GATC 3 cut(s) 405, 549, 582
MboI GATC 3 cut(s) 403, 547, 580
MhlI GDGCHC 2 cut(s) 1162, 1296
MlsI TGGCCA 1 cut(s) 691
MluNI TGGCCA 1 cut(s) 691
MmeI TCCRAC 2 cut(s) 618, 1289
Mox20I TGGCCA 1 cut(s) 691
Mph1103I ATGCAT 1 cut(s) 622
MroI TCCGGA 1 cut(s) 349
MroNI GCCGGC 1 cut(s) 1098
MroXI GAANNNNTTC 1 cut(s) 903
MscI TGGCCA 1 cut(s) 691
MseI TTAA 6 cut(s) 324, 447, 810, 879, 1062, 1125
MslI CAYNNNNRTG 3 cut(s) 1034, 1048, 1403
Msp20I TGGCCA 1 cut(s) 691
MspA1I CMGCKG 1 cut(s) 128
MspI CCGG 4 cut(s) 350, 492, 703, 1099
MspR9I CCNGG 1 cut(s) 493
MvnI CGCG 3 cut(s) 538, 912, 1384
MwoI GCNNNNNNNGC 4 cut(s) 416, 421, 1099, 1343
NaeI GCCGGC 1 cut(s) 1100
NciI CCSGG 1 cut(s) 493
NcoI CCATGG 1 cut(s) 1341
NdeII GATC 3 cut(s) 403, 547, 580
NgoMIV GCCGGC 1 cut(s) 1098
NlaIII CATG 6 cut(s) 489, 1039, 1345, 1408, 1482, 1503
NlaIV GGNNCC 1 cut(s) 1366
NmeAIII GCCGAG 1 cut(s) 758
NmuCI GTSAC 1 cut(s) 365
NruI TCGCGA 1 cut(s) 912
NsiI ATGCAT 1 cut(s) 622
NspI RCATGY 1 cut(s) 1482
NspV TTCGAA 1 cut(s) 931
PagI TCATGA 1 cut(s) 1035
PcsI WCGNNNNNNNCGW 1 cut(s) 785
PdiI GCCGGC 1 cut(s) 1100
PdmI GAANNNNTTC 1 cut(s) 903
PfeI GAWTC 4 cut(s) 5, 305, 933, 1356
PflFI GACNNNGTC 1 cut(s) 487
PflMI CCANNNNNTGG 1 cut(s) 1347
PfoI TCCNGGA 1 cut(s) 491
PkrI GCNGC 7 cut(s) 148, 222, 319, 341, 358, 746, 1324
Psp124BI GAGCTC 1 cut(s) 1296
PspFI CCCAGC 1 cut(s) 419
PspN4I GGNNCC 1 cut(s) 1366
PspPI GGNCC 3 cut(s) 489, 629, 1193
PstI CTGCAG 1 cut(s) 604
PsyI GACNNNGTC 1 cut(s) 487
PvuII CAGCTG 1 cut(s) 128
RruI TCGCGA 1 cut(s) 912
RsaI GTAC 3 cut(s) 577, 1028, 1432
RsaNI GTAC 3 cut(s) 576, 1027, 1431
RseI CAYNNNNRTG 3 cut(s) 1034, 1048, 1403
SacI GAGCTC 1 cut(s) 1296
SaqAI TTAA 6 cut(s) 324, 447, 810, 879, 1062, 1125
SatI GCNGC 7 cut(s) 147, 221, 318, 340, 357, 745, 1323
Sau3AI GATC 3 cut(s) 403, 547, 580
Sau96I GGNCC 3 cut(s) 489, 629, 1193
ScrFI CCNGG 1 cut(s) 493
SduI GDGCHC 2 cut(s) 1162, 1296
SfaNI GCATC 4 cut(s) 186, 607, 735, 876
SfcI CTRYAG 1 cut(s) 600
SfuI TTCGAA 1 cut(s) 931
SinI GGWCC 2 cut(s) 489, 1193
SmiMI CAYNNNNRTG 3 cut(s) 1034, 1048, 1403
SmlI CTYRAG 1 cut(s) 1055
SmoI CTYRAG 1 cut(s) 1055
SsiI CCGC 3 cut(s) 221, 536, 1384
SspI AATATT 1 cut(s) 1200
SspMI CTAG 5 cut(s) 333, 980, 1002, 1166, 1329
SstI GAGCTC 1 cut(s) 1296
StyD4I CCNGG 1 cut(s) 491
StyI CCWWGG 3 cut(s) 733, 1341, 1360
TaaI ACNGT 6 cut(s) 163, 293, 593, 608, 1077, 1279
TaqI TCGA 2 cut(s) 78, 931
TatI WGTACW 2 cut(s) 575, 1430
TauI GCSGC 1 cut(s) 223
TfiI GAWTC 4 cut(s) 5, 305, 933, 1356
Tru1I TTAA 6 cut(s) 324, 447, 810, 879, 1062, 1125
Tru9I TTAA 6 cut(s) 324, 447, 810, 879, 1062, 1125
TscAI CASTG 3 cut(s) 692, 1082, 1428
TseFI GTSAC 1 cut(s) 365
TseI GCWGC 6 cut(s) 146, 317, 339, 356, 744, 1322
Tsp45I GTSAC 1 cut(s) 365
TspDTI ATGAA 8 cut(s) 78, 176, 183, 189, 230, 708, 1387, 1433
TspRI CASTG 3 cut(s) 692, 1082, 1428
Tth111I GACNNNGTC 1 cut(s) 487
Van91I CCANNNNNTGG 1 cut(s) 1347
VpaK11BI GGWCC 2 cut(s) 489, 1193
XapI RAATTY 5 cut(s) 30, 297, 497, 791, 817
XceI RCATGY 1 cut(s) 1482
XmnI GAANNNNTTC 1 cut(s) 903
XspI CTAG 5 cut(s) 333, 980, 1002, 1166, 1329
Zsp2I ATGCAT 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.