Rmu_sc0001985.1_g000002

S-type anion channel

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001985.1
Physical Location & Seq
Reverse (-)
18176 .. 22903
4728 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001985.1_g000002.1.cds

Sequence Viewer

Length: 2013 bp
atgccggacgacgaagccgacctcttcgacgctcttatgagaagacaagtgaaggagaaaagaagagctgaagagttcacagtaccgtacgtatctgaacgccaaagcagaaatcgaggctctgaggcaaaggggaagaaaaatcgtggactaccatgtaaggatgaggacgatgatgacgatgataagaagatggagttcaaggtgctgcaaacttttagtgatcgaaaatggaaaaccatggggtctgaagaacatgtttgccttcaaattccatctcctatcaaatacatatcatcaaatgaagtggttcggtttgataacgttaaggagcatacctttttcaatgacaagcatcagctaactgacccatcagctaagaaaactgggatggctgctatgatatctcttagcatgccaccatcgccagcggaaattcagttacagaacacaaaacaagtgcccttcagccctgaaacaaatttcaacaatggaattccagattctaattctgccgcaactaagcgtgctagtagcagccaactaccggaagaagcagaatttcactctcagccccagtcaaaaatctctgcatttgaagatcaagcaattcaaatagggcattgtccttatcaaccaagtattgaaagattgaaagataagaggtttgataatttcaagacatggtctgggaaacttgaaaggcagatatcactagcttcactactacggggaaagccaccaagaaaaagtgatcaaccagagaatgcttctgtgcaaagtacagatcaagttgaccctttacctgcagacagatactttgatgcattggaagggcctgagttggacacccttagggcttcagaggaaattctgcttccagaagataagaagtggccatttcttctccggtatcccatttcttcatttagcatctgtcttggtgttagcagccaagctattttgtggaaaaccctgcctatctctgcctccacaaaatttctccacttgagcttaacaccaaatttggttctctggttcatttctcttgctctattagttattgttgcttgcatctacattcttaaaatcatcttctactttgaagcagttcgtcgtgagtattaccatccaatccgaatcaacttcttcttttccccatttatagcccttttgttcacagctcttggagtcccaccttcaatttctaacaacctccatccagctctttggtacatcctcatggcaccaattctatgtcttgagcttaaaatctatgggcagtggatgtcaggaggcgaccgccggctctcaaaggtggcgaatcctgtgaaccatctctctattgttggcaactttgttggggcattgctaggagcatcaatgggactaaaagaaggaccaatattcttttttgctgttgggttggctcactacacggtcttatttgtaactttgtaccagagactaccaacaaatgagtcagtaatcccaaaggaactccatcctgtgttctttctgtttgttgcagcacctagcgtagcttcaatggcatgggcaagaatccaaggctccttcgattatggctcacggattagttacttcatcgccatgttcctttatctctcattggtagtccgagtcaattttttccgaggattcaagttctcactggcatggtgggcatacactttcccaatgaccggtgctgccattgcaaccatcaggtactcgaatgaagtgacgaatgtagcaactcaagctttggctgtcatactctctctcattgccacgctcacagtcatggctctcttcatagtaaccctattgcatgcctttgtgctccgagacctcttccccaatgacattccaattgccattagtgacagaaacccaaataaaccacacagaaagtggttccaattaaagcaggaaaactcttcgtatcccaaagagattgagaattccttgaagtcaacaacaggctcagagaaaaaggatttggaaatttga

Protein Analysis

670

Amino Acids

75.96

Weight (kDa)

8.6

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 814
AccB1I GGYRCC 1 cut(s) 1246
AciI CCGC 3 cut(s) 431, 516, 1303
AclI AACGTT 1 cut(s) 324
AcoI YGGCCR 1 cut(s) 896
AcuI CTGAAG 4 cut(s) 90, 270, 451, 846
AfaI GTAC 6 cut(s) 84, 89, 784, 1235, 1460, 1730
AfiI CCNNNNNNNGG 2 cut(s) 547, 1703
AflIII ACRYGT 1 cut(s) 256
AgeI ACCGGT 1 cut(s) 1703
AjuI GAANNNNNNNTTGG 1 cut(s) 1985
Alw21I GWGCWC 1 cut(s) 1845
Alw26I GTCTC 2 cut(s) 1459, 1842
AoxI GGCC 2 cut(s) 836, 896
ApeKI GCWGC 6 cut(s) 208, 395, 537, 951, 1529, 1709
ArsI GACNNNNNNTTYG 2 cut(s) 803, 835
AsiGI ACCGGT 1 cut(s) 1703
Asp700I GAANNNNTTC 2 cut(s) 309, 1110
AspS9I GGNCC 2 cut(s) 836, 1400
AvaII GGWCC 1 cut(s) 1400
AxyI CCTNAGG 1 cut(s) 854
BaeGI GKGCMC 1 cut(s) 465
BalI TGGCCA 1 cut(s) 898
BanI GGYRCC 1 cut(s) 1246
BbsI GAAGAC 1 cut(s) 49
Bbv12I GWGCWC 1 cut(s) 1845
BbvI GCAGC 6 cut(s) 195, 382, 549, 963, 1541, 1696
BciVI GTATCC 2 cut(s) 924, 1956
BclI TGATCA 1 cut(s) 754
BcoDI GTCTC 2 cut(s) 1459, 1842
BfaI CTAG 4 cut(s) 531, 716, 1373, 1536
BfmI CTRYAG 1 cut(s) 807
BfuAI ACCTGC 1 cut(s) 814
BfuI GTATCC 2 cut(s) 924, 1956
BisI GCNGC 7 cut(s) 209, 396, 516, 538, 952, 1530, 1710
BlsI GCNGC 7 cut(s) 210, 397, 517, 539, 953, 1531, 1711
Bme18I GGWCC 1 cut(s) 1400
BmgT120I GGNCC 2 cut(s) 836, 1400
BmiI GGNNCC 3 cut(s) 1248, 1573, 1919
BmrI ACTGGG 2 cut(s) 396, 571
BmsI GCATC 5 cut(s) 364, 814, 942, 1083, 1388
BmuI ACTGGG 2 cut(s) 396, 571
BpiI GAAGAC 1 cut(s) 49
BpuEI CTTGAG 3 cut(s) 1030, 1283, 1743
BsaAI YACGTR 1 cut(s) 91
BsaI GGTCTC 1 cut(s) 1842
BsaJI CCNNGG 3 cut(s) 240, 1567, 1654
BsaWI WCCGGW 3 cut(s) 547, 909, 1703
Bsc4I CCNNNNNNNGG 2 cut(s) 547, 1703
Bse118I RCCGGY 2 cut(s) 1305, 1703
Bse1I ACTGG 3 cut(s) 391, 577, 1677
Bse21I CCTNAGG 1 cut(s) 854
Bse3DI GCAATG 3 cut(s) 1367, 1713, 1785
BseDI CCNNGG 3 cut(s) 240, 1567, 1654
BseGI GGATG 7 cut(s) 169, 396, 1129, 1219, 1236, 1293, 1504
BseLI CCNNNNNNNGG 2 cut(s) 547, 1703
BseMI GCAATG 3 cut(s) 1367, 1713, 1785
BseMII CTCAG 4 cut(s) 114, 584, 831, 2001
BseNI ACTGG 3 cut(s) 391, 577, 1677
BseSI GKGCMC 1 cut(s) 465
BseXI GCAGC 6 cut(s) 195, 382, 549, 963, 1541, 1696
Bsh1285I CGRYCG 1 cut(s) 1303
BshFI GGCC 2 cut(s) 838, 898
BshNI GGYRCC 1 cut(s) 1246
BshTI ACCGGT 1 cut(s) 1703
BsiEI CGRYCG 1 cut(s) 1303
BsiHKAI GWGCWC 1 cut(s) 1845
BsiSI CCGG 5 cut(s) 5, 548, 910, 1306, 1704
BsiWI CGTACG 1 cut(s) 87
BslFI GGGAC 2 cut(s) 1178, 1401
BslI CCNNNNNNNGG 2 cut(s) 547, 1703
BsmAI GTCTC 2 cut(s) 1459, 1842
BsmFI GGGAC 2 cut(s) 1178, 1401
BsmI GAATGC 1 cut(s) 772
BsnI GGCC 2 cut(s) 838, 898
Bso31I GGTCTC 1 cut(s) 1842
Bsp1286I GDGCHC 2 cut(s) 465, 1845
Bsp143I GATC 4 cut(s) 223, 601, 754, 787
Bsp19I CCATGG 1 cut(s) 240
BspACI CCGC 3 cut(s) 431, 516, 1303
BspANI GGCC 2 cut(s) 838, 898
BspCNI CTCAG 4 cut(s) 115, 583, 832, 2000
BspLI GGNNCC 3 cut(s) 1248, 1573, 1919
BspMAI CTGCAG 1 cut(s) 811
BspMI ACCTGC 1 cut(s) 814
BspQI GCTCTTC 1 cut(s) 58
BspT107I GGYRCC 1 cut(s) 1246
BspTNI GGTCTC 1 cut(s) 1842
BsrDI GCAATG 3 cut(s) 1367, 1713, 1785
BsrFI RCCGGY 2 cut(s) 1305, 1703
BsrI ACTGG 3 cut(s) 391, 577, 1677
BssAI RCCGGY 2 cut(s) 1305, 1703
BssECI CCNNGG 3 cut(s) 240, 1567, 1654
BssMI GATC 4 cut(s) 223, 601, 754, 787
BssT1I CCWWGG 2 cut(s) 240, 1567
Bst4CI ACNGT 4 cut(s) 82, 87, 1441, 1801
Bst6I CTCTTC 6 cut(s) 29, 58, 66, 1817, 1859, 1945
BstBAI YACGTR 1 cut(s) 91
BstC8I GCNNGC 6 cut(s) 416, 429, 528, 1072, 1307, 1833
BstDEI CTNAG 8 cut(s) 123, 378, 410, 522, 570, 840, 854, 1987
BstDSI CCRYGG 1 cut(s) 240
BstF5I GGATG 7 cut(s) 169, 396, 1129, 1219, 1236, 1293, 1504
BstKTI GATC 4 cut(s) 226, 604, 757, 790
BstMAI GTCTC 2 cut(s) 1459, 1842
BstMBI GATC 4 cut(s) 223, 601, 754, 787
BstMCI CGRYCG 1 cut(s) 1303
BstMWI GCNNNNNNNGC 5 cut(s) 424, 1550, 1682, 1715, 1760
BstNSI RCATGY 3 cut(s) 260, 418, 1835
BstSFI CTRYAG 1 cut(s) 807
BstSLI GKGCMC 1 cut(s) 465
BstSNI TACGTA 1 cut(s) 91
BstV1I GCAGC 6 cut(s) 195, 382, 549, 963, 1541, 1696
BstV2I GAAGAC 1 cut(s) 49
BstXI CCANNNNNNTGG 1 cut(s) 1230
Bsu36I CCTNAGG 1 cut(s) 854
BsuI GTATCC 2 cut(s) 924, 1956
BsuRI GGCC 2 cut(s) 838, 898
BtgI CCRYGG 1 cut(s) 240
BtgZI GCGATG 2 cut(s) 408, 1591
BtsCI GGATG 7 cut(s) 169, 396, 1129, 1219, 1236, 1293, 1504
BtsI GCAGTG 1 cut(s) 1289
BtsIMutI CAGTG 2 cut(s) 1289, 1670
BveI ACCTGC 1 cut(s) 814
Cac8I GCNNGC 6 cut(s) 416, 429, 528, 1072, 1307, 1833
Cfr10I RCCGGY 2 cut(s) 1305, 1703
Cfr13I GGNCC 2 cut(s) 836, 1400
CseI GACGC 1 cut(s) 38
Csp6I GTAC 6 cut(s) 83, 88, 783, 1234, 1459, 1729
CspAI ACCGGT 1 cut(s) 1703
CspCI CAANNNNNGTGG 2 cut(s) 288, 323
CviQI GTAC 6 cut(s) 83, 88, 783, 1234, 1459, 1729
DdeI CTNAG 8 cut(s) 123, 378, 410, 522, 570, 840, 854, 1987
DpnI GATC 4 cut(s) 225, 603, 756, 789
DpnII GATC 4 cut(s) 223, 601, 754, 787
EaeI YGGCCR 1 cut(s) 896
Eam1104I CTCTTC 6 cut(s) 29, 58, 66, 1817, 1859, 1945
EarI CTCTTC 6 cut(s) 29, 58, 66, 1817, 1859, 1945
Eco105I TACGTA 1 cut(s) 91
Eco130I CCWWGG 2 cut(s) 240, 1567
Eco31I GGTCTC 1 cut(s) 1842
Eco32I GATATC 2 cut(s) 405, 711
Eco47I GGWCC 1 cut(s) 1400
Eco57I CTGAAG 4 cut(s) 90, 270, 451, 846
Eco81I CCTNAGG 1 cut(s) 854
EcoO109I RGGNCCY 1 cut(s) 836
EcoRI GAATTC 2 cut(s) 495, 1963
EcoRV GATATC 2 cut(s) 405, 711
EcoT14I CCWWGG 2 cut(s) 240, 1567
EcoT22I ATGCAT 1 cut(s) 829
ErhI CCWWGG 2 cut(s) 240, 1567
FaqI GGGAC 2 cut(s) 1178, 1401
FbaI TGATCA 1 cut(s) 754
Fnu4HI GCNGC 7 cut(s) 209, 396, 516, 538, 952, 1530, 1710
FokI GGATG 7 cut(s) 176, 403, 1116, 1206, 1223, 1300, 1491
Fsp4HI GCNGC 7 cut(s) 209, 396, 516, 538, 952, 1530, 1710
FspBI CTAG 4 cut(s) 531, 716, 1373, 1536
GluI GCNGC 7 cut(s) 209, 396, 516, 538, 952, 1530, 1710
HaeIII GGCC 2 cut(s) 838, 898
HapII CCGG 5 cut(s) 5, 548, 910, 1306, 1704
HgaI GACGC 1 cut(s) 38
HincII GTYRAC 2 cut(s) 796, 1977
HindII GTYRAC 2 cut(s) 796, 1977
HindIII AAGCTT 1 cut(s) 1761
HinfI GANTC 8 cut(s) 503, 1140, 1191, 1324, 1481, 1563, 1641, 1659
HpaII CCGG 5 cut(s) 5, 548, 910, 1306, 1704
Hpy166II GTNNAC 6 cut(s) 78, 149, 796, 1179, 1333, 1977
Hpy188I TCNGA 9 cut(s) 97, 124, 250, 865, 1139, 1640, 1655, 1847, 1990
Hpy188III TCNNGA 6 cut(s) 500, 679, 881, 1118, 1262, 1293
Hpy8I GTNNAC 6 cut(s) 78, 149, 796, 1179, 1333, 1977
Hpy99I CGWCG 3 cut(s) 14, 32, 1119
HpyAV CCTTC 7 cut(s) 46, 275, 475, 827, 1209, 1391, 1585
HpyCH4III ACNGT 4 cut(s) 82, 87, 1441, 1801
HpyCH4IV ACGT 2 cut(s) 90, 324
HpyCH4V TGCA 9 cut(s) 211, 593, 778, 809, 827, 1074, 1529, 1718, 1831
HpyF10VI GCNNNNNNNGC 5 cut(s) 424, 1550, 1682, 1715, 1760
HpyF3I CTNAG 8 cut(s) 123, 378, 410, 522, 570, 840, 854, 1987
HpySE526I ACGT 2 cut(s) 90, 324
KroI GCCGGC 1 cut(s) 1305
KroNI GCCGGC 1 cut(s) 1307
Ksp22I TGATCA 1 cut(s) 754
Kzo9I GATC 4 cut(s) 223, 601, 754, 787
LguI GCTCTTC 1 cut(s) 58
LmnI GCTCC 4 cut(s) 331, 1376, 1577, 1848
Lsp1109I GCAGC 6 cut(s) 195, 382, 549, 963, 1541, 1696
LweI GCATC 5 cut(s) 364, 814, 942, 1083, 1388
MaeI CTAG 4 cut(s) 531, 716, 1373, 1536
MaeII ACGT 2 cut(s) 90, 324
MaeIII GTNAC 6 cut(s) 441, 1450, 1598, 1741, 1819, 1883
MalI GATC 4 cut(s) 225, 603, 756, 789
MboI GATC 4 cut(s) 223, 601, 754, 787
MfeI CAATTG 1 cut(s) 1872
MhlI GDGCHC 2 cut(s) 465, 1845
MlsI TGGCCA 1 cut(s) 898
MluNI TGGCCA 1 cut(s) 898
MlyI GAGTC 3 cut(s) 1200, 1490, 1650
MmeI TCCRAC 1 cut(s) 825
Mox20I TGGCCA 1 cut(s) 898
Mph1103I ATGCAT 1 cut(s) 829
MroNI GCCGGC 1 cut(s) 1305
MroXI GAANNNNTTC 2 cut(s) 309, 1110
MscI TGGCCA 1 cut(s) 898
MseI TTAA 5 cut(s) 327, 1016, 1086, 1269, 1925
MslI CAYNNNNRTG 4 cut(s) 1241, 1610, 1675, 1802
Msp20I TGGCCA 1 cut(s) 898
MspA1I CMGCKG 1 cut(s) 431
MspI CCGG 5 cut(s) 5, 548, 910, 1306, 1704
MunI CAATTG 1 cut(s) 1872
Mva1269I GAATGC 1 cut(s) 772
MwoI GCNNNNNNNGC 5 cut(s) 424, 1550, 1682, 1715, 1760
NaeI GCCGGC 1 cut(s) 1307
NcoI CCATGG 1 cut(s) 240
NdeII GATC 4 cut(s) 223, 601, 754, 787
NgoMIV GCCGGC 1 cut(s) 1305
NlaIV GGNNCC 3 cut(s) 1248, 1573, 1919
NmuCI GTSAC 2 cut(s) 1741, 1883
NsiI ATGCAT 1 cut(s) 829
NspI RCATGY 3 cut(s) 260, 418, 1835
PaeI GCATGC 2 cut(s) 418, 1835
PciI ACATGT 1 cut(s) 256
PciSI GCTCTTC 1 cut(s) 58
PcsI WCGNNNNNNNCGW 2 cut(s) 15, 177
PctI GAATGC 1 cut(s) 772
PdiI GCCGGC 1 cut(s) 1307
PdmI GAANNNNTTC 2 cut(s) 309, 1110
PfeI GAWTC 5 cut(s) 503, 1140, 1324, 1563, 1659
Pfl23II CGTACG 1 cut(s) 87
PflFI GACNNNGTC 1 cut(s) 685
PinAI ACCGGT 1 cut(s) 1703
PkrI GCNGC 7 cut(s) 210, 397, 517, 539, 953, 1531, 1711
PleI GAGTC 3 cut(s) 1199, 1489, 1649
PpsI GAGTC 3 cut(s) 1199, 1489, 1649
Ppu21I YACGTR 1 cut(s) 91
PscI ACATGT 1 cut(s) 256
Psp1406I AACGTT 1 cut(s) 324
PspLI CGTACG 1 cut(s) 87
PspN4I GGNNCC 3 cut(s) 1248, 1573, 1919
PspPI GGNCC 2 cut(s) 836, 1400
PstI CTGCAG 1 cut(s) 811
PsyI GACNNNGTC 1 cut(s) 685
RsaI GTAC 6 cut(s) 84, 89, 784, 1235, 1460, 1730
RsaNI GTAC 6 cut(s) 83, 88, 783, 1234, 1459, 1729
RseI CAYNNNNRTG 4 cut(s) 1241, 1610, 1675, 1802
SapI GCTCTTC 1 cut(s) 58
SaqAI TTAA 5 cut(s) 327, 1016, 1086, 1269, 1925
SatI GCNGC 7 cut(s) 209, 396, 516, 538, 952, 1530, 1710
Sau3AI GATC 4 cut(s) 223, 601, 754, 787
Sau96I GGNCC 2 cut(s) 836, 1400
SchI GAGTC 3 cut(s) 1200, 1490, 1650
SduI GDGCHC 2 cut(s) 465, 1845
SfaNI GCATC 5 cut(s) 364, 814, 942, 1083, 1388
SfcI CTRYAG 1 cut(s) 807
SinI GGWCC 1 cut(s) 1400
SmiMI CAYNNNNRTG 4 cut(s) 1241, 1610, 1675, 1802
SmlI CTYRAG 3 cut(s) 1009, 1262, 1758
SmoI CTYRAG 3 cut(s) 1009, 1262, 1758
SnaBI TACGTA 1 cut(s) 91
SphI GCATGC 2 cut(s) 418, 1835
SsiI CCGC 3 cut(s) 431, 516, 1303
SspI AATATT 1 cut(s) 1407
SspMI CTAG 4 cut(s) 531, 716, 1373, 1536
StyI CCWWGG 2 cut(s) 240, 1567
TaaI ACNGT 4 cut(s) 82, 87, 1441, 1801
TaiI ACGT 2 cut(s) 93, 327
TaqI TCGA 5 cut(s) 27, 115, 226, 1578, 1733
TatI WGTACW 1 cut(s) 782
TauI GCSGC 1 cut(s) 518
TfiI GAWTC 5 cut(s) 503, 1140, 1324, 1563, 1659
Tru1I TTAA 5 cut(s) 327, 1016, 1086, 1269, 1925
Tru9I TTAA 5 cut(s) 327, 1016, 1086, 1269, 1925
TscAI CASTG 2 cut(s) 1289, 1677
TseFI GTSAC 2 cut(s) 1741, 1883
TseI GCWGC 6 cut(s) 208, 395, 537, 951, 1529, 1709
Tsp45I GTSAC 2 cut(s) 1741, 1883
TspDTI ATGAA 6 cut(s) 318, 915, 1030, 1594, 1752, 1804
TspGWI ACGGA 1 cut(s) 1606
TspRI CASTG 2 cut(s) 1289, 1677
Tth111I GACNNNGTC 1 cut(s) 685
VpaK11BI GGWCC 1 cut(s) 1400
XceI RCATGY 3 cut(s) 260, 418, 1835
XcmI CCANNNNNNNNNTGG 1 cut(s) 1911
XmnI GAANNNNTTC 2 cut(s) 309, 1110
XspI CTAG 4 cut(s) 531, 716, 1373, 1536
Zsp2I ATGCAT 1 cut(s) 829
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.