pycom01g22190

S-type anion channel

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
19899647 .. 19901708
2062 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g22190.2

Sequence Viewer

Length: 1797 bp
ATGATGAAAAATAACAAAAATATGAATTCTGGAAAACAGAAATCCCTTGAACTTCCATGTCTCATCAAGTATATACCATCAAATGAAGAGGTTGGCTTTGGTGATGCTAAGGAGATTAGATCCGATGAACCTGCGCATTCTGTTGCTATTAGCATGCCAACATCACCAGAGGAAATCCATTTGCAGAACAAAAAAAGAAATCTCTTCATCGGTGGAATCCCAGCTTCTTCTGCCACACTTAAAGGTGCTAGCAGCAGCACACTGCCGAAGACAGCAAAATTTCACCTTCAGCCAATGGAAAAAAGCTCTGGATTTGAAGAGGAAATGAACACTGGGCATTTCCCTTCTCACCCGAGTATTGAAAGTTTGAAAGATAAGAGATTTGATACTTTCAAAACATGGTCCAGAAAACTCGACAGGAAGATAACGCTTCTCCATGGAAATAGACCGGGGGAAACTGAATCTGAGAATGTTAATGGGAAAATTGAAGAAATCGAGCGTTTACCTGCAGACCGATACTTTGATGCATTGGAAGGGCCAGAGTTGGATACTCTTAGGCCTTCAGAGGAAATACTGCTTCCGGAAGACAAACAGTGGCCATTTCTTCTTCGGTATCCAGTTTCTTCGTTTAGCATCTGCCTCGGCGTTAGCAGCCAAGCAATTTTGTGGAAGGCCCTGCCTACCTCTGCCTCAATGAAATTTCTCCACTTGAGCTTAACAATAAATATAGTTTTGTGGTGCATTTCAGTTGTCCTTTTAGCTATTGTTTCTTGCATCTACCTTGTAAAAGTAGCCCTTTACTTTGAAGCAGTTCGCCGTGAGTACCACCATCCAATCCGTATCAATTTCTTCTTTGCTCCATGGATAGCCCTCTTGTTCTTAGCTCTTGGAGTGCCACCTTCATTTGCTAACAACCTGCATCCATCTCTTTGGTACATTCTTATGACTCCGCTTCTATGTCTTGAGCTTAAAATCTATGGACAGTGGATGTTCGGAGGCCAGCGTAGGCTTTCAAAGGTGGCAAATCCTTTCAACCATCTCGCAATAGCTGGGAACTTTGTGGGGGCGTTGCTTGGTGCATCAATGGGACTACAAGAAGGACCAATATTCTTCTTTGCTATAGGGTTTGTTCACTACATTGTATTATTTGTTACTCTCTACCAAAGACTTCCAACAAATGATACCGTGATCCCAAAAGAACTCCATCCTGTGTTCTTTCTCTTTGTTGCAGCACCAAGTATAGCTTCAGTAGCATGGGCAAAAATCCAAGGCTCCTTTGATCATGGCTCGCGGATTGCGTACTTCATTTCCTTGTTCCTTTATCTCTCACTGGCAATAAGATATCGCTTTCATTCTAAACTGAATCCAAATTTTGTAATTTTTGGACTTGGATATTTTTCTGATCACATTTATTTGCATTTGTGTTTTCATAGGTTTTCTATGGCATGGTGGGCTTATACTTTCCCAATGACTGGTGCTGCCATTGCAACCATCAAGTATTCAGATGAAGTCACAAATGTGGTAACACAAGCTCTGGCTGTCATACTCTCTCTCATTGCCATAATCACAGTCATTGCTCTTCTCATAACAACAATCTTGCATGGCTTAGTGCTTCAAAACCTCTTCCCTAATGACATTGCAATTGCCATTAGTGACAGAAAGCCAAACCCTAACAAGAAGTGGTTCCACGTAAATGGCTACGAGAACAACGATTCAGAAGCTGTCAAGATCGTGACCCATTTTGAGATGCAACCCCAAACTTCAGAGAGAAACTTGCATCGAGATGCCATGGTGTAA

Protein Analysis

599

Amino Acids

67.59

Weight (kDa)

8.66

Isoelectric Point (pI)

40.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 135
Acc36I ACCTGC 3 cut(s) 139, 514, 924
AccB7I CCANNNNNTGG 1 cut(s) 1472
AccII CGCG 1 cut(s) 1291
AccIII TCCGGA 1 cut(s) 580
AciI CCGC 2 cut(s) 950, 1291
AclWI GGATC 2 cut(s) 114, 1183
AcoI YGGCCR 1 cut(s) 596
AcsI RAATTY 4 cut(s) 25, 278, 698, 1369
AcuI CTGAAG 4 cut(s) 272, 546, 1230, 1746
AfaI GTAC 3 cut(s) 824, 935, 1301
AfiI CCNNNNNNNGG 1 cut(s) 1472
AjuI GAANNNNNNNTTGG 2 cut(s) 1228, 1260
AleI CACNNNNGTG 1 cut(s) 1517
Alw26I GTCTC 1 cut(s) 65
AlwI GGATC 2 cut(s) 114, 1183
AlwNI CAGNNNCTG 1 cut(s) 1721
Ama87I CYCGRG 1 cut(s) 352
Aor13HI TCCGGA 1 cut(s) 580
AoxI GGCC 5 cut(s) 536, 557, 596, 672, 997
ApeKI GCWGC 5 cut(s) 252, 255, 651, 1229, 1478
ApoI RAATTY 4 cut(s) 25, 278, 698, 1369
ArsI GACNNNNNNTTYG 2 cut(s) 503, 535
Asp700I GAANNNNTTC 2 cut(s) 810, 1682
AspLEI GCGC 1 cut(s) 136
AspS9I GGNCC 4 cut(s) 402, 536, 673, 1100
AsuC2I CCSGG 1 cut(s) 450
AsuHPI GGTGA 4 cut(s) 113, 156, 275, 341
AsuNHI GCTAGC 1 cut(s) 248
AvaI CYCGRG 1 cut(s) 352
AvaII GGWCC 2 cut(s) 402, 1100
BalI TGGCCA 1 cut(s) 598
BbsI GAAGAC 2 cut(s) 275, 591
BbvI GCAGC 5 cut(s) 264, 267, 663, 1241, 1465
BccI CCATC 6 cut(s) 85, 837, 931, 1044, 1212, 1499
BceAI ACGGC 1 cut(s) 801
BcgI CGANNNNNNTGC 4 cut(s) 113, 147, 622, 656
BciVI GTATCC 2 cut(s) 541, 624
BclI TGATCA 2 cut(s) 1279, 1402
BcnI CCSGG 1 cut(s) 450
BcoDI GTCTC 1 cut(s) 65
BfaI CTAG 1 cut(s) 249
BfmI CTRYAG 2 cut(s) 507, 1119
BfuAI ACCTGC 3 cut(s) 139, 514, 924
BfuI GTATCC 2 cut(s) 541, 624
BisI GCNGC 5 cut(s) 253, 256, 652, 1230, 1479
BlsI GCNGC 5 cut(s) 254, 257, 653, 1231, 1480
Bme1390I CCNGG 1 cut(s) 450
Bme18I GGWCC 2 cut(s) 402, 1100
BmeT110I CYCGRG 1 cut(s) 352
BmgT120I GGNCC 4 cut(s) 402, 536, 673, 1100
BmiI GGNNCC 2 cut(s) 1273, 1685
BmrFI CCNGG 1 cut(s) 450
BmrI ACTGGG 1 cut(s) 342
BmsI GCATC 9 cut(s) 94, 514, 642, 783, 928, 1088, 1737, 1774, 1786
BmtI GCTAGC 1 cut(s) 252
BmuI ACTGGG 1 cut(s) 342
BpiI GAAGAC 2 cut(s) 275, 591
Bpu10I CCTNAGC 1 cut(s) 108
BpuEI CTTGAG 2 cut(s) 730, 983
BpuMI CCSGG 1 cut(s) 450
BsaAI YACGTR 1 cut(s) 1690
BsaJI CCNNGG 6 cut(s) 436, 449, 640, 860, 1267, 1788
BsaWI WCCGGW 1 cut(s) 580
Bsc4I CCNNNNNNNGG 1 cut(s) 1472
Bse1I ACTGG 4 cut(s) 337, 617, 1335, 1477
Bse3DI GCAATG 4 cut(s) 1482, 1554, 1572, 1635
BseAI TCCGGA 1 cut(s) 580
BseDI CCNNGG 6 cut(s) 436, 449, 640, 860, 1267, 1788
BseGI GGATG 4 cut(s) 829, 919, 993, 1204
BseLI CCNNNNNNNGG 1 cut(s) 1472
BseMI GCAATG 4 cut(s) 1482, 1554, 1572, 1635
BseMII CTCAG 1 cut(s) 456
BseNI ACTGG 4 cut(s) 337, 617, 1335, 1477
BseXI GCAGC 5 cut(s) 264, 267, 663, 1241, 1465
BseYI CCCAGC 2 cut(s) 220, 1049
Bsh1236I CGCG 1 cut(s) 1291
BshFI GGCC 5 cut(s) 538, 559, 598, 674, 999
BsiHKCI CYCGRG 1 cut(s) 352
BsiSI CCGG 2 cut(s) 449, 581
BslFI GGGAC 1 cut(s) 1101
BslI CCNNNNNNNGG 1 cut(s) 1472
BsmAI GTCTC 1 cut(s) 65
BsmFI GGGAC 1 cut(s) 1101
BsmI GAATGC 1 cut(s) 136
BsnI GGCC 5 cut(s) 538, 559, 598, 674, 999
BsoBI CYCGRG 1 cut(s) 352
Bsp13I TCCGGA 1 cut(s) 580
Bsp143I GATC 5 cut(s) 119, 1188, 1279, 1402, 1728
Bsp19I CCATGG 3 cut(s) 436, 860, 1788
BspACI CCGC 2 cut(s) 950, 1291
BspANI GGCC 5 cut(s) 538, 559, 598, 674, 999
BspCNI CTCAG 1 cut(s) 457
BspEI TCCGGA 1 cut(s) 580
BspFNI CGCG 1 cut(s) 1291
BspLI GGNNCC 2 cut(s) 1273, 1685
BspMAI CTGCAG 1 cut(s) 511
BspMI ACCTGC 3 cut(s) 139, 514, 924
BspOI GCTAGC 1 cut(s) 252
BspPI GGATC 2 cut(s) 114, 1183
BspQI GCTCTTC 1 cut(s) 1584
BsrDI GCAATG 4 cut(s) 1482, 1554, 1572, 1635
BsrI ACTGG 4 cut(s) 337, 617, 1335, 1477
BssECI CCNNGG 6 cut(s) 436, 449, 640, 860, 1267, 1788
BssMI GATC 5 cut(s) 119, 1188, 1279, 1402, 1728
BssT1I CCWWGG 4 cut(s) 436, 860, 1267, 1788
Bst4CI ACNGT 4 cut(s) 594, 984, 1186, 1570
Bst6I CTCTTC 5 cut(s) 81, 209, 312, 1584, 1628
BstBAI YACGTR 1 cut(s) 1690
BstC8I GCNNGC 4 cut(s) 155, 250, 1001, 1289
BstDEI CTNAG 5 cut(s) 108, 465, 554, 880, 1606
BstDSI CCRYGG 3 cut(s) 436, 860, 1788
BstF5I GGATG 4 cut(s) 829, 919, 993, 1204
BstFNI CGCG 1 cut(s) 1291
BstHHI GCGC 1 cut(s) 136
BstKTI GATC 5 cut(s) 122, 1191, 1282, 1405, 1731
BstMAI GTCTC 1 cut(s) 65
BstMBI GATC 5 cut(s) 119, 1188, 1279, 1402, 1728
BstMWI GCNNNNNNNGC 5 cut(s) 230, 651, 1250, 1451, 1484
BstNSI RCATGY 1 cut(s) 157
BstSCI CCNGG 1 cut(s) 448
BstSFI CTRYAG 2 cut(s) 507, 1119
BstUI CGCG 1 cut(s) 1291
BstV1I GCAGC 5 cut(s) 264, 267, 663, 1241, 1465
BstV2I GAAGAC 2 cut(s) 275, 591
BstX2I RGATCY 1 cut(s) 119
BstXI CCANNNNNNTGG 2 cut(s) 930, 1694
BstYI RGATCY 1 cut(s) 119
BsuI GTATCC 2 cut(s) 541, 624
BsuRI GGCC 5 cut(s) 538, 559, 598, 674, 999
BtgI CCRYGG 3 cut(s) 436, 860, 1788
BtsCI GGATG 4 cut(s) 829, 919, 993, 1204
BtsI GCAGTG 1 cut(s) 260
BtsIMutI CAGTG 5 cut(s) 260, 330, 599, 989, 1328
BveI ACCTGC 3 cut(s) 139, 514, 924
Cac8I GCNNGC 4 cut(s) 155, 250, 1001, 1289
CaiI CAGNNNCTG 1 cut(s) 1721
CfoI GCGC 1 cut(s) 136
Cfr13I GGNCC 4 cut(s) 402, 536, 673, 1100
Csp6I GTAC 3 cut(s) 823, 934, 1300
CviQI GTAC 3 cut(s) 823, 934, 1300
DdeI CTNAG 5 cut(s) 108, 465, 554, 880, 1606
DpnI GATC 5 cut(s) 121, 1190, 1281, 1404, 1730
DpnII GATC 5 cut(s) 119, 1188, 1279, 1402, 1728
EaeI YGGCCR 1 cut(s) 596
Eam1104I CTCTTC 5 cut(s) 81, 209, 312, 1584, 1628
EarI CTCTTC 5 cut(s) 81, 209, 312, 1584, 1628
Eco130I CCWWGG 4 cut(s) 436, 860, 1267, 1788
Eco147I AGGCCT 1 cut(s) 559
Eco32I GATATC 1 cut(s) 1343
Eco47I GGWCC 2 cut(s) 402, 1100
Eco57I CTGAAG 4 cut(s) 272, 546, 1230, 1746
Eco88I CYCGRG 1 cut(s) 352
EcoO109I RGGNCCY 1 cut(s) 673
EcoRI GAATTC 1 cut(s) 25
EcoRV GATATC 1 cut(s) 1343
EcoT14I CCWWGG 4 cut(s) 436, 860, 1267, 1788
EcoT22I ATGCAT 1 cut(s) 529
ErhI CCWWGG 4 cut(s) 436, 860, 1267, 1788
FalI AAGNNNNNCTT 4 cut(s) 780, 812, 1228, 1260
FaqI GGGAC 1 cut(s) 1101
FbaI TGATCA 2 cut(s) 1279, 1402
Fnu4HI GCNGC 5 cut(s) 253, 256, 652, 1230, 1479
FokI GGATG 4 cut(s) 816, 906, 1000, 1191
Fsp4HI GCNGC 5 cut(s) 253, 256, 652, 1230, 1479
FspBI CTAG 1 cut(s) 249
FspI TGCGCA 1 cut(s) 135
GlaI GCGC 1 cut(s) 135
GluI GCNGC 5 cut(s) 253, 256, 652, 1230, 1479
GsaI CCCAGC 2 cut(s) 224, 1053
HaeIII GGCC 5 cut(s) 538, 559, 598, 674, 999
HapII CCGG 2 cut(s) 449, 581
HhaI GCGC 1 cut(s) 136
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HinfI GANTC 5 cut(s) 216, 461, 946, 1363, 1712
HpaII CCGG 2 cut(s) 449, 581
HphI GGTGA 4 cut(s) 113, 156, 275, 341
Hpy166II GTNNAC 2 cut(s) 503, 1132
Hpy188I TCNGA 8 cut(s) 124, 466, 565, 995, 1402, 1504, 1717, 1765
Hpy188III TCNNGA 8 cut(s) 30, 309, 405, 581, 962, 1726, 1732, 1781
Hpy8I GTNNAC 2 cut(s) 503, 1132
HpyAV CCTTC 7 cut(s) 296, 354, 527, 570, 664, 909, 1091
HpyCH4III ACNGT 4 cut(s) 594, 984, 1186, 1570
HpyCH4IV ACGT 1 cut(s) 1689
HpyF10VI GCNNNNNNNGC 5 cut(s) 230, 651, 1250, 1451, 1484
HpyF3I CTNAG 5 cut(s) 108, 465, 554, 880, 1606
HpySE526I ACGT 1 cut(s) 1689
HspAI GCGC 1 cut(s) 134
Kpn2I TCCGGA 1 cut(s) 580
Ksp22I TGATCA 2 cut(s) 1279, 1402
Kzo9I GATC 5 cut(s) 119, 1188, 1279, 1402, 1728
LguI GCTCTTC 1 cut(s) 1584
LmnI GCTCC 2 cut(s) 862, 1277
Lsp1109I GCAGC 5 cut(s) 264, 267, 663, 1241, 1465
LweI GCATC 9 cut(s) 94, 514, 642, 783, 928, 1088, 1737, 1774, 1786
MaeI CTAG 1 cut(s) 249
MaeII ACGT 1 cut(s) 1689
MaeIII GTNAC 5 cut(s) 1150, 1510, 1522, 1652, 1732
MalI GATC 5 cut(s) 121, 1190, 1281, 1404, 1730
MboI GATC 5 cut(s) 119, 1188, 1279, 1402, 1728
MfeI CAATTG 1 cut(s) 1641
MflI RGATCY 1 cut(s) 119
MlsI TGGCCA 1 cut(s) 598
MluCI AATT 9 cut(s) 25, 278, 483, 660, 698, 844, 1369, 1377, 1641
MluNI TGGCCA 1 cut(s) 598
MlyI GAGTC 1 cut(s) 940
MmeI TCCRAC 2 cut(s) 525, 1196
Mox20I TGGCCA 1 cut(s) 598
Mph1103I ATGCAT 1 cut(s) 529
MroI TCCGGA 1 cut(s) 580
MroXI GAANNNNTTC 2 cut(s) 810, 1682
MscI TGGCCA 1 cut(s) 598
MseI TTAA 4 cut(s) 240, 474, 716, 969
MslI CAYNNNNRTG 4 cut(s) 941, 1517, 1692, 1782
Msp20I TGGCCA 1 cut(s) 598
MspI CCGG 2 cut(s) 449, 581
MspR9I CCNGG 1 cut(s) 450
MunI CAATTG 1 cut(s) 1641
Mva1269I GAATGC 1 cut(s) 136
MvnI CGCG 1 cut(s) 1291
MwoI GCNNNNNNNGC 5 cut(s) 230, 651, 1250, 1451, 1484
NciI CCSGG 1 cut(s) 450
NcoI CCATGG 3 cut(s) 436, 860, 1788
NdeII GATC 5 cut(s) 119, 1188, 1279, 1402, 1728
NheI GCTAGC 1 cut(s) 248
NlaIV GGNNCC 2 cut(s) 1273, 1685
NmeAIII GCCGAG 1 cut(s) 621
NmuCI GTSAC 3 cut(s) 1510, 1652, 1732
NsbI TGCGCA 1 cut(s) 135
NsiI ATGCAT 1 cut(s) 529
NspI RCATGY 1 cut(s) 157
OliI CACNNNNGTG 1 cut(s) 1517
PaeI GCATGC 1 cut(s) 157
PceI AGGCCT 1 cut(s) 559
PciSI GCTCTTC 1 cut(s) 1584
PcsI WCGNNNNNNNCGW 2 cut(s) 1295, 1707
PctI GAATGC 1 cut(s) 136
PdmI GAANNNNTTC 2 cut(s) 810, 1682
PfeI GAWTC 4 cut(s) 216, 461, 1363, 1712
PflMI CCANNNNNTGG 1 cut(s) 1472
PkrI GCNGC 5 cut(s) 254, 257, 653, 1231, 1480
PleI GAGTC 1 cut(s) 940
PpsI GAGTC 1 cut(s) 940
Ppu21I YACGTR 1 cut(s) 1690
PspFI CCCAGC 2 cut(s) 220, 1049
PspN4I GGNNCC 2 cut(s) 1273, 1685
PspPI GGNCC 4 cut(s) 402, 536, 673, 1100
PstI CTGCAG 1 cut(s) 511
PstNI CAGNNNCTG 1 cut(s) 1721
PsuI RGATCY 1 cut(s) 119
RsaI GTAC 3 cut(s) 824, 935, 1301
RsaNI GTAC 3 cut(s) 823, 934, 1300
RseI CAYNNNNRTG 4 cut(s) 941, 1517, 1692, 1782
SapI GCTCTTC 1 cut(s) 1584
SaqAI TTAA 4 cut(s) 240, 474, 716, 969
SatI GCNGC 5 cut(s) 253, 256, 652, 1230, 1479
Sau3AI GATC 5 cut(s) 119, 1188, 1279, 1402, 1728
Sau96I GGNCC 4 cut(s) 402, 536, 673, 1100
SchI GAGTC 1 cut(s) 940
ScrFI CCNGG 1 cut(s) 450
SfaNI GCATC 9 cut(s) 94, 514, 642, 783, 928, 1088, 1737, 1774, 1786
SfcI CTRYAG 2 cut(s) 507, 1119
SinI GGWCC 2 cut(s) 402, 1100
SmiMI CAYNNNNRTG 4 cut(s) 941, 1517, 1692, 1782
SmlI CTYRAG 2 cut(s) 709, 962
SmoI CTYRAG 2 cut(s) 709, 962
SphI GCATGC 1 cut(s) 157
Sse9I AATT 9 cut(s) 25, 278, 483, 660, 698, 844, 1369, 1377, 1641
SseBI AGGCCT 1 cut(s) 559
SsiI CCGC 2 cut(s) 950, 1291
SspI AATATT 1 cut(s) 1107
SspMI CTAG 1 cut(s) 249
StuI AGGCCT 1 cut(s) 559
StyD4I CCNGG 1 cut(s) 448
StyI CCWWGG 4 cut(s) 436, 860, 1267, 1788
TaaI ACNGT 4 cut(s) 594, 984, 1186, 1570
TaiI ACGT 1 cut(s) 1692
TaqI TCGA 3 cut(s) 414, 495, 1780
TaqII GACCGA 1 cut(s) 528
TasI AATT 9 cut(s) 25, 278, 483, 660, 698, 844, 1369, 1377, 1641
TfiI GAWTC 4 cut(s) 216, 461, 1363, 1712
Tru1I TTAA 4 cut(s) 240, 474, 716, 969
Tru9I TTAA 4 cut(s) 240, 474, 716, 969
TscAI CASTG 5 cut(s) 267, 337, 599, 989, 1335
TseFI GTSAC 3 cut(s) 1510, 1652, 1732
TseI GCWGC 5 cut(s) 252, 255, 651, 1229, 1478
Tsp45I GTSAC 3 cut(s) 1510, 1652, 1732
TspGWI ACGGA 1 cut(s) 827
TspRI CASTG 5 cut(s) 267, 337, 599, 989, 1335
Van91I CCANNNNNTGG 1 cut(s) 1472
VpaK11BI GGWCC 2 cut(s) 402, 1100
XapI RAATTY 4 cut(s) 25, 278, 698, 1369
XceI RCATGY 1 cut(s) 157
XmnI GAANNNNTTC 2 cut(s) 810, 1682
XspI CTAG 1 cut(s) 249
Zsp2I ATGCAT 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.