AT4G33260

Cell division cycle 20.2, cofactor of APC complex-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
16041006 .. 16043549
2544 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G33260.2

Sequence Viewer

Length: 1344 bp
ATGGATGCAGGTTTGAATCGGTGCCCACTTCAAGAACACTTTCTTCCCAGAAAAAATTCCAAGGAAAATCTGGACAGGTTCATACCGAATAGATCAGCGATGAATTTTGACTATGCTCACTTTGCCCTCACTGAAGAAAGAAAAGGTAAGGATCAATCTGCAACGGTAAGTTCACCATCCAAAGAGGCCTACAGGAAGCAATTGGCTGAGACCATGAACTTGAACCACACAAGGATTCTCGCCTTCAGAAACAAACCTCAGGCTCCTGTCGAACTGCTTCCGAGCAATCACTCTGCTTCTCTTCACCAACAACCCAAATCTGTAAAGCCTCGTCGATACATTCCTCAGACTTCTGAGAGAACCTTGGATGCACCTGACATTGTTGACGATTTCTACCTCAACTTGCTGGACTGGGGAAGTGCAAATGTCTTAGCCATAGCGTTGGACCACACTGTCTACTTGTGGGATGCTTCCACTGGTTCTACATCTGAGCTTGTGACCATTGATGAGGAGAAGGGACCTGTCACAAGTATCAACTGGGCTCCTGATGGTCGTCATGTTGCAGTTGGACTCAACAACTCTGAAGTCCAGCTGTGGGATTCTGCATCCAACCGTCAACTGAGAACATTAAAGGGTGGTCACCAGTCAAGAGTAGGATCACTGGCATGGAACAATCATATCCTTACTACTGGAGGAATGGATGGACTGATCATCAACAATGATGTGAGGATCAGATCACCCATTGTGGAAACTTACAGAGGTCACACTCAAGAAGTTTGTGGGCTCAAGTGGTCAGGATCTGGACAACAACTAGCAAGTGGTGGCAACGACAATGTGGTACACATCTGGGATCGTTCTGTCGCTTCCTCAAACTCAACCACACAATGGCTGCACAGGCTTGAGGAACATACATCTGCTGTGAAGGCTCTTGCGTGGTGCCCTTTCCAAGCGAATTTGCTTGCAACTGGTGGTGGTGGAGGAGACAGGACGATAAAGTTCTGGAATACTCACACTGGGGCTTGCTTGAATTCAGTAGACACTGGTTCCCAAGTTTGTTCGTTGTTATGGAGCAAGAATGAAAGAGAGTTGCTTAGCTCACATGGGTTTACACAGAATCAGCTTACACTTTGGAAGTACCCATCCATGGTGAAAATGGCTGAGCTCACTGGTCATACATCAAGAGTTCTATATATGGCCCAGAGTCCAGATGGTTGTACTGTAGCTTCAGCAGCAGGAGACGAGACCCTGAGGTTTTGGAACGTTTTTGGAGTACCAGAGACTGCAAAAAAAGCTGCACCAAAAGCAGTTGCCGAGCCATTTTCTCATGTGAATCGTATTCGATGA

Protein Analysis

447

Amino Acids

49.5

Weight (kDa)

8.17

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 122 - 417 8.9e-124 CDC20/Fizzy WD40 domain
WD40_WDHD1_1st PF24817 133 - 225 7.8e-09 WDHD1 first WD40 domain
Beta-prop_WDR19_1st PF23389 136 - 237 7.9e-09 WDR19 first beta-propeller
Beta-prop_WDR36-Utp21_2nd PF25168 141 - 292 7.9e-06 WDR36/Utp21 second beta-propeller domain
WD40_Gbeta PF25391 142 - 284 3.1e-08 G protein beta WD-40 repeat protein
WDR55 PF24796 142 - 251 3.1e-06 WDR55
WD40_Prp19 PF24814 143 - 223 5.4e-10 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 144 - 293 1.6e-21 THOC3 beta-propeller domain
Beta-prop_EIPR1 PF23609 144 - 334 4.3e-07 EIPR1 beta-propeller
Beta-prop_EML_2 PF23414 144 - 283 1.5e-10 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5 PF25175 144 - 243 9.6e-11 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 145 - 242 9.1e-14 WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_1st PF25171 149 - 283 1.2e-09 WDR36/Utp21 first beta-propeller
WD40_MABP1-WDR62_2nd PF24782 160 - 414 1.2e-08 MABP1/WDR62 second WD40 domain
ANAPC4_WD40 PF12894 167 - 225 3.1e-06 Anaphase-promoting complex subunit 4 WD40 domain
Beta-prop_Aladin PF25460 171 - 288 1.5e-06 Aladin seven-bladed propeller
Beta-prop_WDR3_2nd PF25172 185 - 297 1.6e-07 WDR3 second beta-propeller domain
Beta-prop_EML_2 PF23414 194 - 313 3.3e-08 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_Aladin PF25460 216 - 416 1.4e-06 Aladin seven-bladed propeller
WD40_Prp19 PF24814 224 - 416 1.5e-19 Prp19 WD40 domain
WD40_Gbeta PF25391 243 - 415 5.7e-07 G protein beta WD-40 repeat protein
Beta-prop_WDR5 PF25175 247 - 360 3.5e-15 WDR5 beta-propeller domain
WD40 PF00400 249 - 284 2.3e-08 WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1 PF24105 249 - 345 3.8e-09 CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_1st PF25173 250 - 378 3.1e-17 WDR3 first beta-propeller domain
Beta-prop_EML PF23409 252 - 379 5.7e-06 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_THOC3 PF25174 255 - 366 1.8e-21 THOC3 beta-propeller domain
Beta-prop_WDR19_1st PF23389 262 - 419 5.4e-07 WDR19 first beta-propeller
Beta-prop_EML_2 PF23414 309 - 427 1.4e-06 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_2nd PF25172 326 - 425 3.3e-06 WDR3 second beta-propeller domain
Beta-prop_THOC3 PF25174 350 - 417 1.2e-06 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 452
AccB1I GGYRCC 2 cut(s) 21, 936
AccB7I CCANNNNNTGG 1 cut(s) 885
AccI GTMKAC 2 cut(s) 456, 1035
AclI AACGTT 1 cut(s) 1260
AclWI GGATC 5 cut(s) 159, 664, 737, 805, 858
AcsI RAATTY 4 cut(s) 55, 103, 952, 1027
AcuI CTGAAG 4 cut(s) 153, 229, 603, 1209
AfaI GTAC 4 cut(s) 840, 1136, 1216, 1272
AfiI CCNNNNNNNGG 3 cut(s) 595, 885, 1144
AgsI TTSAA 4 cut(s) 16, 32, 223, 1027
AluBI AGCT 7 cut(s) 493, 592, 1095, 1120, 1162, 1223, 1292
AluI AGCT 7 cut(s) 493, 592, 1095, 1120, 1162, 1223, 1292
Alw21I GWGCWC 1 cut(s) 1164
Alw26I GTCTC 5 cut(s) 203, 975, 1230, 1235, 1271
AlwI GGATC 5 cut(s) 159, 664, 737, 805, 858
AlwNI CAGNNNCTG 2 cut(s) 800, 1280
AoxI GGCC 2 cut(s) 186, 1194
ApeKI GCWGC 3 cut(s) 889, 1229, 1292
ApoI RAATTY 4 cut(s) 55, 103, 952, 1027
Asp700I GAANNNNTTC 3 cut(s) 39, 55, 276
AspS9I GGNCC 3 cut(s) 445, 518, 1195
AsuHPI GGTGA 5 cut(s) 165, 296, 632, 729, 1159
AvaII GGWCC 2 cut(s) 445, 518
AxyI CCTNAGG 2 cut(s) 258, 1247
BaeGI GKGCMC 2 cut(s) 26, 941
BanI GGYRCC 2 cut(s) 21, 936
BanII GRGCYC 3 cut(s) 544, 786, 1164
BarI GAAGNNNNNNTAC 2 cut(s) 1207, 1239
Bbv12I GWGCWC 1 cut(s) 1164
BbvI GCAGC 3 cut(s) 876, 1241, 1279
BccI CCATC 5 cut(s) 184, 542, 695, 1147, 1202
BclI TGATCA 1 cut(s) 708
BcoDI GTCTC 5 cut(s) 203, 975, 1230, 1235, 1271
BfaI CTAG 1 cut(s) 812
BfmI CTRYAG 2 cut(s) 190, 1218
BisI GCNGC 3 cut(s) 890, 1230, 1293
BlpI GCTNAGC 2 cut(s) 1091, 1158
BlsI GCNGC 3 cut(s) 891, 1231, 1294
Bme18I GGWCC 2 cut(s) 445, 518
BmgT120I GGNCC 3 cut(s) 445, 518, 1195
BmiI GGNNCC 6 cut(s) 23, 264, 519, 543, 938, 1045
BmrI ACTGGG 3 cut(s) 421, 547, 1023
BmsI GCATC 3 cut(s) 358, 457, 614
BmuI ACTGGG 3 cut(s) 421, 547, 1023
BpmI CTGGAG 1 cut(s) 711
Bpu1102I GCTNAGC 2 cut(s) 1091, 1158
BpuEI CTTGAG 3 cut(s) 753, 770, 920
BsaI GGTCTC 2 cut(s) 203, 1235
BsaJI CCNNGG 3 cut(s) 60, 363, 1143
Bsc4I CCNNNNNNNGG 3 cut(s) 595, 885, 1144
Bse21I CCTNAGG 2 cut(s) 258, 1247
BseDI CCNNGG 3 cut(s) 60, 363, 1143
BseGI GGATG 7 cut(s) 10, 176, 373, 472, 605, 706, 1139
BseLI CCNNNNNNNGG 3 cut(s) 595, 885, 1144
BseMII CTCAG 8 cut(s) 198, 272, 345, 359, 480, 611, 1149, 1238
BseRI GAGGAG 2 cut(s) 524, 993
BseSI GKGCMC 2 cut(s) 26, 941
BseXI GCAGC 3 cut(s) 876, 1241, 1279
BsgI GTGCAG 2 cut(s) 875, 1278
BshFI GGCC 2 cut(s) 188, 1196
BshNI GGYRCC 2 cut(s) 21, 936
BsiHKAI GWGCWC 1 cut(s) 1164
BslFI GGGAC 1 cut(s) 531
BslI CCNNNNNNNGG 3 cut(s) 595, 885, 1144
BsmAI GTCTC 5 cut(s) 203, 975, 1230, 1235, 1271
BsmBI CGTCTC 1 cut(s) 1230
BsmFI GGGAC 1 cut(s) 531
BsnI GGCC 2 cut(s) 188, 1196
Bso31I GGTCTC 2 cut(s) 203, 1235
Bsp1286I GDGCHC 5 cut(s) 26, 544, 786, 941, 1164
Bsp143I GATC 8 cut(s) 92, 151, 656, 708, 729, 734, 797, 850
Bsp1720I GCTNAGC 2 cut(s) 1091, 1158
Bsp19I CCATGG 1 cut(s) 1143
BspANI GGCC 2 cut(s) 188, 1196
BspCNI CTCAG 8 cut(s) 199, 271, 346, 358, 481, 612, 1150, 1239
BspLI GGNNCC 6 cut(s) 23, 264, 519, 543, 938, 1045
BspPI GGATC 5 cut(s) 159, 664, 737, 805, 858
BspT107I GGYRCC 2 cut(s) 21, 936
BspTNI GGTCTC 2 cut(s) 203, 1235
BssECI CCNNGG 3 cut(s) 60, 363, 1143
BssMI GATC 8 cut(s) 92, 151, 656, 708, 729, 734, 797, 850
BssT1I CCWWGG 3 cut(s) 60, 363, 1143
Bst4CI ACNGT 4 cut(s) 166, 454, 614, 1219
Bst6I CTCTTC 1 cut(s) 306
BstC8I GCNNGC 2 cut(s) 960, 1021
BstDSI CCRYGG 1 cut(s) 1143
BstEII GGTNACC 1 cut(s) 638
BstF5I GGATG 7 cut(s) 10, 176, 373, 472, 605, 706, 1139
BstKTI GATC 8 cut(s) 95, 154, 659, 711, 732, 737, 800, 853
BstMAI GTCTC 5 cut(s) 203, 975, 1230, 1235, 1271
BstMBI GATC 8 cut(s) 92, 151, 656, 708, 729, 734, 797, 850
BstMWI GCNNNNNNNGC 6 cut(s) 122, 895, 923, 1229, 1289, 1301
BstPI GGTNACC 1 cut(s) 638
BstSFI CTRYAG 2 cut(s) 190, 1218
BstSLI GKGCMC 2 cut(s) 26, 941
BstV1I GCAGC 3 cut(s) 876, 1241, 1279
BstX2I RGATCY 1 cut(s) 797
BstXI CCANNNNNNTGG 1 cut(s) 442
BstYI RGATCY 1 cut(s) 797
Bsu36I CCTNAGG 2 cut(s) 258, 1247
BsuRI GGCC 2 cut(s) 188, 1196
BtgI CCRYGG 1 cut(s) 1143
BtgZI GCGATG 1 cut(s) 113
BtsCI GGATG 7 cut(s) 10, 176, 373, 472, 605, 706, 1139
BtsIMutI CAGTG 7 cut(s) 129, 450, 474, 659, 1011, 1038, 1164
Cac8I GCNNGC 2 cut(s) 960, 1021
CaiI CAGNNNCTG 2 cut(s) 800, 1280
Cfr13I GGNCC 3 cut(s) 445, 518, 1195
Csp6I GTAC 4 cut(s) 839, 1135, 1215, 1271
CviAII CATG 6 cut(s) 214, 557, 666, 1100, 1144, 1325
CviQI GTAC 4 cut(s) 839, 1135, 1215, 1271
DpnI GATC 8 cut(s) 94, 153, 658, 710, 731, 736, 799, 852
DpnII GATC 8 cut(s) 92, 151, 656, 708, 729, 734, 797, 850
DrdI GACNNNNNNGTC 1 cut(s) 452
DseDI GACNNNNNNGTC 1 cut(s) 452
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Ecl136II GAGCTC 1 cut(s) 1162
Eco130I CCWWGG 3 cut(s) 60, 363, 1143
Eco147I AGGCCT 1 cut(s) 188
Eco24I GRGCYC 3 cut(s) 544, 786, 1164
Eco31I GGTCTC 2 cut(s) 203, 1235
Eco47I GGWCC 2 cut(s) 445, 518
Eco53kI GAGCTC 1 cut(s) 1162
Eco57I CTGAAG 4 cut(s) 153, 229, 603, 1209
Eco81I CCTNAGG 2 cut(s) 258, 1247
Eco91I GGTNACC 1 cut(s) 638
EcoICRI GAGCTC 1 cut(s) 1162
EcoO109I RGGNCCY 1 cut(s) 518
EcoO65I GGTNACC 1 cut(s) 638
EcoRI GAATTC 1 cut(s) 1027
EcoT14I CCWWGG 3 cut(s) 60, 363, 1143
EcoT38I GRGCYC 3 cut(s) 544, 786, 1164
ErhI CCWWGG 3 cut(s) 60, 363, 1143
Esp3I CGTCTC 1 cut(s) 1230
FaeI CATG 6 cut(s) 217, 560, 669, 1103, 1147, 1328
FaqI GGGAC 1 cut(s) 531
FatI CATG 6 cut(s) 213, 556, 665, 1099, 1143, 1324
FbaI TGATCA 1 cut(s) 708
FblI GTMKAC 2 cut(s) 456, 1035
Fnu4HI GCNGC 3 cut(s) 890, 1230, 1293
FokI GGATG 7 cut(s) 17, 163, 380, 479, 592, 713, 1126
FriOI GRGCYC 3 cut(s) 544, 786, 1164
Fsp4HI GCNGC 3 cut(s) 890, 1230, 1293
FspBI CTAG 1 cut(s) 812
GluI GCNGC 3 cut(s) 890, 1230, 1293
GsuI CTGGAG 1 cut(s) 711
HaeIII GGCC 2 cut(s) 188, 1196
Hin1II CATG 6 cut(s) 217, 560, 669, 1103, 1147, 1328
HincII GTYRAC 2 cut(s) 385, 617
HindII GTYRAC 2 cut(s) 385, 617
HinfI GANTC 7 cut(s) 16, 235, 570, 599, 1114, 1201, 1330
HphI GGTGA 5 cut(s) 165, 296, 632, 729, 1159
Hpy166II GTNNAC 7 cut(s) 173, 385, 457, 617, 841, 1036, 1107
Hpy188I TCNGA 7 cut(s) 248, 282, 348, 355, 490, 583, 734
Hpy8I GTNNAC 7 cut(s) 173, 385, 457, 617, 841, 1036, 1107
Hpy99I CGWCG 1 cut(s) 336
HpyAV CCTTC 3 cut(s) 253, 508, 916
HpyCH4III ACNGT 4 cut(s) 166, 454, 614, 1219
HpyCH4IV ACGT 1 cut(s) 1260
HpyF10VI GCNNNNNNNGC 6 cut(s) 122, 895, 923, 1229, 1289, 1301
HpySE526I ACGT 1 cut(s) 1260
Hsp92II CATG 6 cut(s) 217, 560, 669, 1103, 1147, 1328
Ksp22I TGATCA 1 cut(s) 708
Kzo9I GATC 8 cut(s) 92, 151, 656, 708, 729, 734, 797, 850
LmnI GCTCC 3 cut(s) 268, 547, 1068
Lsp1109I GCAGC 3 cut(s) 876, 1241, 1279
LweI GCATC 3 cut(s) 358, 457, 614
MaeI CTAG 1 cut(s) 812
MaeII ACGT 1 cut(s) 1260
MaeIII GTNAC 4 cut(s) 496, 523, 638, 761
MalI GATC 8 cut(s) 94, 153, 658, 710, 731, 736, 799, 852
MboI GATC 8 cut(s) 92, 151, 656, 708, 729, 734, 797, 850
MboII GAAGA 3 cut(s) 35, 146, 293
MfeI CAATTG 1 cut(s) 200
MflI RGATCY 1 cut(s) 797
MhlI GDGCHC 5 cut(s) 26, 544, 786, 941, 1164
MluCI AATT 5 cut(s) 55, 103, 200, 952, 1027
MlyI GAGTC 2 cut(s) 564, 1210
MmeI TCCRAC 3 cut(s) 423, 547, 633
MroXI GAANNNNTTC 3 cut(s) 39, 55, 276
MseI TTAA 1 cut(s) 629
MslI CAYNNNNRTG 1 cut(s) 664
MspA1I CMGCKG 1 cut(s) 592
MunI CAATTG 1 cut(s) 200
MwoI GCNNNNNNNGC 6 cut(s) 122, 895, 923, 1229, 1289, 1301
NcoI CCATGG 1 cut(s) 1143
NdeII GATC 8 cut(s) 92, 151, 656, 708, 729, 734, 797, 850
NlaIII CATG 6 cut(s) 217, 560, 669, 1103, 1147, 1328
NlaIV GGNNCC 6 cut(s) 23, 264, 519, 543, 938, 1045
NmeAIII GCCGAG 1 cut(s) 1336
NmuCI GTSAC 4 cut(s) 496, 523, 638, 761
PceI AGGCCT 1 cut(s) 188
PdmI GAANNNNTTC 3 cut(s) 39, 55, 276
PfeI GAWTC 5 cut(s) 16, 235, 599, 1114, 1330
PflMI CCANNNNNTGG 1 cut(s) 885
PkrI GCNGC 3 cut(s) 891, 1231, 1294
PleI GAGTC 2 cut(s) 564, 1209
PpsI GAGTC 2 cut(s) 564, 1209
PpuMI RGGWCCY 1 cut(s) 518
Psp124BI GAGCTC 1 cut(s) 1164
Psp1406I AACGTT 1 cut(s) 1260
Psp5II RGGWCCY 1 cut(s) 518
PspEI GGTNACC 1 cut(s) 638
PspN4I GGNNCC 6 cut(s) 23, 264, 519, 543, 938, 1045
PspPI GGNCC 3 cut(s) 445, 518, 1195
PspPPI RGGWCCY 1 cut(s) 518
PstNI CAGNNNCTG 2 cut(s) 800, 1280
PsuI RGATCY 1 cut(s) 797
PvuII CAGCTG 1 cut(s) 592
RsaI GTAC 4 cut(s) 840, 1136, 1216, 1272
RsaNI GTAC 4 cut(s) 839, 1135, 1215, 1271
RseI CAYNNNNRTG 1 cut(s) 664
SacI GAGCTC 1 cut(s) 1164
SaqAI TTAA 1 cut(s) 629
SatI GCNGC 3 cut(s) 890, 1230, 1293
Sau3AI GATC 8 cut(s) 92, 151, 656, 708, 729, 734, 797, 850
Sau96I GGNCC 3 cut(s) 445, 518, 1195
SchI GAGTC 2 cut(s) 564, 1210
SduI GDGCHC 5 cut(s) 26, 544, 786, 941, 1164
SfaNI GCATC 3 cut(s) 358, 457, 614
SfcI CTRYAG 2 cut(s) 190, 1218
SinI GGWCC 2 cut(s) 445, 518
SmiMI CAYNNNNRTG 1 cut(s) 664
SmlI CTYRAG 3 cut(s) 768, 785, 899
SmoI CTYRAG 3 cut(s) 768, 785, 899
Sse9I AATT 5 cut(s) 55, 103, 200, 952, 1027
SseBI AGGCCT 1 cut(s) 188
SspMI CTAG 1 cut(s) 812
SstI GAGCTC 1 cut(s) 1164
StuI AGGCCT 1 cut(s) 188
StyI CCWWGG 3 cut(s) 60, 363, 1143
TaaI ACNGT 4 cut(s) 166, 454, 614, 1219
TaiI ACGT 1 cut(s) 1263
TaqI TCGA 3 cut(s) 270, 334, 1339
TasI AATT 5 cut(s) 55, 103, 200, 952, 1027
TatI WGTACW 1 cut(s) 1214
TfiI GAWTC 5 cut(s) 16, 235, 599, 1114, 1330
Tru1I TTAA 1 cut(s) 629
Tru9I TTAA 1 cut(s) 629
TscAI CASTG 7 cut(s) 136, 457, 481, 666, 1018, 1045, 1171
TseFI GTSAC 4 cut(s) 496, 523, 638, 761
TseI GCWGC 3 cut(s) 889, 1229, 1292
Tsp45I GTSAC 4 cut(s) 496, 523, 638, 761
TspDTI ATGAA 4 cut(s) 70, 116, 230, 1092
TspRI CASTG 7 cut(s) 136, 457, 481, 666, 1018, 1045, 1171
Van91I CCANNNNNTGG 1 cut(s) 885
VpaK11BI GGWCC 2 cut(s) 445, 518
XapI RAATTY 4 cut(s) 55, 103, 952, 1027
XcmI CCANNNNNNNNNTGG 3 cut(s) 67, 1150, 1205
XmiI GTMKAC 2 cut(s) 456, 1035
XmnI GAANNNNTTC 3 cut(s) 39, 55, 276
XspI CTAG 1 cut(s) 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.