Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002111

Physical Location & Seq

Genomic Coordinates Forward (+)

18618533 .. 18621196

Gene Structure 2664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G129000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGAGGTCTTCATATACCTTGGGGTCACAGTCTAGGTGCCCTCTTGAAGAACGGCTTCTTCAGAAAAAGAATTCTCGGGAAAATTTGGACAGGTTCATACCAAATAGGTCTGCAATGGATTTTGATTTTGCTCATTACATGCTTACTCAAGGTAGGAAAGGTAAGGAAAACCCATCTAGATATGGAAGAGACTATAGGAAGCAGTTGGCAGAGGCTATGAACATGAATCGCACTAGAATCCTCGCTTTCAAGAACAAGCCTCCTGCCCCTGTAGAGCTTTTCCCGAGCTACTTCTCTTCTTTGCCACAGGATAAACCGGCAAACCCTAAGCCACACAGACACATTCCTCAAACTTCAGAGAGAACACTGGATGCTCCTGACCTTATTGATGATTACTACCTGAATTTGTTGGATTGGGGAAGCTCCAATGTTATTGCAATAGCTCTTGCAAACACAGTTTATTTGTGGGATGCTACTGATTGTTCTACTTCGGAACTGGCCAGATTTGATGTTGAAAGGGGACCTGTTACCAGTGTCAGTTGGGCTATTGATGGACGCCACATTGCCATTGGACTGGACAATTCCGAAGTACAGCTATGGGATTCAACTGCAAAGCAGTATCTGAGAACCTTGAGAGGTTGTCACAGATCACGGGTAGGCTCACTAGCATGGAACAATCACATTCTTACAACTGGAGGAATGGATGGCCGCATTGTAAACAATGATGTAAGAATTAGATCGCACATTGTTGAGACGTACAGAGGACATGAACGCGAGGTTTGTCGGCTTAAGTGGTCAGCCTCAGGGCAGCAATTAGCAAGTGGAGGAAATGATAACCTGCTCCATATATGGGACAACAGATCAGTGGCACCAACACAGTGGCTTCACAGGCTTGAAGACCATACAGCTGCTGTAAAAGCCCTTGCTTGGTGTCCTTTCCAGAGAAATTTGCTTGCTTCTGGTGGAGGTGGGAATGATCGGTGCATAAAGTTCTGGAACACTCACACAGGTGCTTGCCTGAACTCGGTGGACACTGGCTCTCAGGTTTGTGCTTTGCTGTGGAATATGAATGAACGAGAACTGCTTAGCTCACATGGGTTTACTCAGAATCAGCTTACTCTTTGGAAATATCCATCAATGGTTAGAATTGCAGAACTCACGGGTCATACGTCTAGAGTCCTTCATATGGCTCAGAGCCCAAATGGTTGCACAGTAGCATCAGCAGGTGGTGAAACACTGAAATTATGGAATGTTTTTGGGGACCCTGAGGAGGTTAAACCAGCTCCACGACCTCCCAAAGAGCCTTTTGCCCAAGTGAGTCGTATCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko05166 ko05203 map04110 map04111 map04113 map04114 map04120 map05166 map05203

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

444

Amino Acids

50.05

Weight (kDa)

9.09

Isoelectric Point (pI)

48.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33260 AT4G33260 AT4G33270 AT5G26900 AT5G27080 AT5G27570
fragaria_vesca	FvH4_6g21090 FvH4_7g33570
malus_domestica	MD01G1233500.v1.1 MD04G1021900.v1.1 MD07G1305600.v1.1
prunus_persica	Prupe.1G099100_v2.0.a1 Prupe.1G099100_v2.0.a1 Prupe.1G099100_v2.0.a1 Prupe.2G129000_v2.0.a1 Prupe.2G129000_v2.0.a1 Prupe.2G323700_v2.0.a1 Prupe.7G086200_v2.0.a1 Prupe.7G089100_v2.0.a1
pyrus_communis	pycom01g24180 pycom04g01810 pycom07g27890
rosa_chinensis	RchiOBHm_Chr1g0383831 RchiOBHm_Chr3g0477471
rosa_laevigata	RLG00000023716 RLG00000026093
rosa_multiflora	Rmu_co8406979.1_g000001 Rmu_sc0033596.1_g000001 Rmu_ssc0000341.1_g000010
rosa_roxburghii	Rroxscaffold_4G00277200 Rroxscaffold_6G00403920 Rroxscaffold_6G00404600
rosa_rugosa	Rorug01G0442500 Rorug03G0161400
rosa_samantha	Rh1AG468300 Rh1BG426000 Rh1CG438700 Rh1DG458800 Rh3AG211400 Rh3BG244900 Rh3CG238800 Rh3DG238200
rosa_wichuraiana	Rw1G040410 Rw3G019160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1214
Acc36I	ACCTGC	2 cut(s)	846, 1214
AccB1I	GGYRCC	2 cut(s)	36, 868
AccII	CGCG	1 cut(s)	774
AciI	CCGC	2 cut(s)	709, 1327
AcoI	YGGCCR	2 cut(s)	498, 706
AcsI	RAATTY	4 cut(s)	70, 82, 403, 946
AcuI	CTGAAG	2 cut(s)	44, 339
AcyI	GRCGYC	1 cut(s)	556
AfaI	GTAC	2 cut(s)	591, 758
AfiI	CCNNNNNNNGG	5 cut(s)	850, 927, 1024, 1186, 1270
AflII	CTTAAG	1 cut(s)	788
AgsI	TTSAA	5 cut(s)	47, 250, 515, 606, 896
AleI	CACNNNNGTG	1 cut(s)	1008
AluBI	AGCT	9 cut(s)	277, 288, 423, 443, 595, 908, 1089, 1114, 1283
AluI	AGCT	9 cut(s)	277, 288, 423, 443, 595, 908, 1089, 1114, 1283
Alw26I	GTCTC	2 cut(s)	183, 746
AlwNI	CAGNNNCTG	2 cut(s)	622, 911
Ama87I	CYCGRG	2 cut(s)	75, 283
AoxI	GGCC	2 cut(s)	498, 706
ApeKI	GCWGC	2 cut(s)	808, 908
ApoI	RAATTY	4 cut(s)	70, 82, 403, 946
Asp700I	GAANNNNTTC	1 cut(s)	54
AspS9I	GGNCC	2 cut(s)	521, 1261
AsuHPI	GGTGA	1 cut(s)	1241
AvaI	CYCGRG	2 cut(s)	75, 283
AvaII	GGWCC	2 cut(s)	521, 1261
AxyI	CCTNAGG	2 cut(s)	802, 1266
BaeGI	GKGCMC	1 cut(s)	41
BalI	TGGCCA	1 cut(s)	500
BanI	GGYRCC	2 cut(s)	36, 868
BanII	GRGCYC	1 cut(s)	1199
BbsI	GAAGAC	1 cut(s)	903
BbvI	GCAGC	2 cut(s)	820, 895
BccI	CCATC	4 cut(s)	181, 545, 698, 1141
BceAI	ACGGC	1 cut(s)	68
BcoDI	GTCTC	2 cut(s)	183, 746
BfaI	CTAG	5 cut(s)	33, 177, 234, 665, 1173
BfmI	CTRYAG	2 cut(s)	193, 270
BfrI	CTTAAG	1 cut(s)	788
BfuAI	ACCTGC	2 cut(s)	846, 1214
BisI	GCNGC	3 cut(s)	709, 809, 909
BlpI	GCTNAGC	1 cut(s)	1085
BlsI	GCNGC	3 cut(s)	710, 810, 910
Bme18I	GGWCC	2 cut(s)	521, 1261
BmeT110I	CYCGRG	2 cut(s)	75, 283
BmgT120I	GGNCC	2 cut(s)	521, 1261
BmiI	GGNNCC	5 cut(s)	38, 522, 870, 1262, 1263
BmsI	GCATC	3 cut(s)	361, 460, 1226
BpiI	GAAGAC	1 cut(s)	903
BpmI	CTGGAG	1 cut(s)	714
Bpu10I	CCTNAGC	1 cut(s)	327
Bpu1102I	GCTNAGC	1 cut(s)	1085
BpuEI	CTTGAG	2 cut(s)	132, 652
BsaHI	GRCGYC	1 cut(s)	556
BsaJI	CCNNGG	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	5 cut(s)	850, 927, 1024, 1186, 1270
Bse118I	RCCGGY	1 cut(s)	316
Bse1I	ACTGG	6 cut(s)	372, 501, 531, 579, 697, 1039
Bse21I	CCTNAGG	2 cut(s)	802, 1266
Bse3DI	GCAATG	2 cut(s)	120, 561
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	3 cut(s)	376, 475, 709
BseLI	CCNNNNNNNGG	5 cut(s)	850, 927, 1024, 1186, 1270
BseMI	GCAATG	2 cut(s)	120, 561
BseMII	CTCAG	6 cut(s)	614, 816, 1055, 1118, 1205, 1257
BseNI	ACTGG	6 cut(s)	372, 501, 531, 579, 697, 1039
BseRI	GAGGAG	1 cut(s)	1283
BseSI	GKGCMC	1 cut(s)	41
BseXI	GCAGC	2 cut(s)	820, 895
Bsh1236I	CGCG	1 cut(s)	774
BshFI	GGCC	2 cut(s)	500, 708
BshNI	GGYRCC	2 cut(s)	36, 868
BsiHKCI	CYCGRG	2 cut(s)	75, 283
BsiSI	CCGG	1 cut(s)	317
BslFI	GGGAC	3 cut(s)	534, 866, 1274
BslI	CCNNNNNNNGG	5 cut(s)	850, 927, 1024, 1186, 1270
BsmAI	GTCTC	2 cut(s)	183, 746
BsmBI	CGTCTC	1 cut(s)	746
BsmFI	GGGAC	3 cut(s)	534, 866, 1274
BsnI	GGCC	2 cut(s)	500, 708
BsoBI	CYCGRG	2 cut(s)	75, 283
Bsp1286I	GDGCHC	2 cut(s)	41, 1199
Bsp143I	GATC	4 cut(s)	647, 737, 860, 976
Bsp1720I	GCTNAGC	1 cut(s)	1085
BspACI	CCGC	2 cut(s)	709, 1327
BspANI	GGCC	2 cut(s)	500, 708
BspCNI	CTCAG	6 cut(s)	615, 815, 1054, 1117, 1204, 1258
BspFNI	CGCG	1 cut(s)	774
BspLI	GGNNCC	5 cut(s)	38, 522, 870, 1262, 1263
BspMI	ACCTGC	2 cut(s)	846, 1214
BspT107I	GGYRCC	2 cut(s)	36, 868
BspTI	CTTAAG	1 cut(s)	788
BsrDI	GCAATG	2 cut(s)	120, 561
BsrFI	RCCGGY	1 cut(s)	316
BsrI	ACTGG	6 cut(s)	372, 501, 531, 579, 697, 1039
BssAI	RCCGGY	1 cut(s)	316
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	4 cut(s)	647, 737, 860, 976
BssNI	GRCGYC	1 cut(s)	556
BssT1I	CCWWGG	1 cut(s)	18
Bst4CI	ACNGT	4 cut(s)	30, 457, 879, 1213
Bst6I	CTCTTC	2 cut(s)	181, 301
BstACI	GRCGYC	1 cut(s)	556
BstAFI	CTTAAG	1 cut(s)	788
BstC8I	GCNNGC	2 cut(s)	954, 1015
BstDEI	CTNAG	8 cut(s)	327, 623, 802, 1041, 1085, 1104, 1191, 1266
BstF5I	GGATG	3 cut(s)	376, 475, 709
BstFNI	CGCG	1 cut(s)	774
BstKTI	GATC	4 cut(s)	650, 740, 863, 979
BstMAI	GTCTC	2 cut(s)	183, 746
BstMBI	GATC	4 cut(s)	647, 737, 860, 976
BstMWI	GCNNNNNNNGC	2 cut(s)	889, 917
BstNSI	RCATGY	1 cut(s)	142
BstSFI	CTRYAG	2 cut(s)	193, 270
BstSLI	GKGCMC	1 cut(s)	41
BstUI	CGCG	1 cut(s)	774
BstV1I	GCAGC	2 cut(s)	820, 895
BstV2I	GAAGAC	1 cut(s)	903
BstXI	CCANNNNNNTGG	2 cut(s)	574, 879
Bsu36I	CCTNAGG	2 cut(s)	802, 1266
BsuRI	GGCC	2 cut(s)	500, 708
BtsCI	GGATG	3 cut(s)	376, 475, 709
BtsIMutI	CAGTG	6 cut(s)	365, 538, 870, 884, 1032, 1235
BveI	ACCTGC	2 cut(s)	846, 1214
Cac8I	GCNNGC	2 cut(s)	954, 1015
CaiI	CAGNNNCTG	2 cut(s)	622, 911
Cfr10I	RCCGGY	1 cut(s)	316
Cfr13I	GGNCC	2 cut(s)	521, 1261
CseI	GACGC	1 cut(s)	564
Csp6I	GTAC	2 cut(s)	590, 757
CviAII	CATG	5 cut(s)	139, 223, 669, 767, 1094
CviQI	GTAC	2 cut(s)	590, 757
DdeI	CTNAG	8 cut(s)	327, 623, 802, 1041, 1085, 1104, 1191, 1266
DpnI	GATC	4 cut(s)	649, 739, 862, 978
DpnII	GATC	4 cut(s)	647, 737, 860, 976
EaeI	YGGCCR	2 cut(s)	498, 706
Eam1104I	CTCTTC	2 cut(s)	181, 301
EarI	CTCTTC	2 cut(s)	181, 301
Eco130I	CCWWGG	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	1199
Eco47I	GGWCC	2 cut(s)	521, 1261
Eco57I	CTGAAG	2 cut(s)	44, 339
Eco81I	CCTNAGG	2 cut(s)	802, 1266
Eco88I	CYCGRG	2 cut(s)	75, 283
EcoO109I	RGGNCCY	2 cut(s)	521, 1261
EcoRI	GAATTC	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	18
EcoT38I	GRGCYC	1 cut(s)	1199
ErhI	CCWWGG	1 cut(s)	18
Esp3I	CGTCTC	1 cut(s)	746
FaeI	CATG	5 cut(s)	142, 226, 672, 770, 1097
FalI	AAGNNNNNCTT	2 cut(s)	39, 71
FaqI	GGGAC	3 cut(s)	534, 866, 1274
FatI	CATG	5 cut(s)	138, 222, 668, 766, 1093
FauNDI	CATATG	1 cut(s)	1185
Fnu4HI	GCNGC	3 cut(s)	709, 809, 909
FokI	GGATG	3 cut(s)	383, 482, 716
FriOI	GRGCYC	1 cut(s)	1199
Fsp4HI	GCNGC	3 cut(s)	709, 809, 909
FspBI	CTAG	5 cut(s)	33, 177, 234, 665, 1173
GluI	GCNGC	3 cut(s)	709, 809, 909
GsuI	CTGGAG	1 cut(s)	714
HaeIII	GGCC	2 cut(s)	500, 708
HapII	CCGG	1 cut(s)	317
HgaI	GACGC	1 cut(s)	564
Hin1I	GRCGYC	1 cut(s)	556
Hin1II	CATG	5 cut(s)	142, 226, 672, 770, 1097
HinfI	GANTC	6 cut(s)	226, 237, 602, 1108, 1176, 1318
HpaII	CCGG	1 cut(s)	317
HphI	GGTGA	1 cut(s)	1241
Hpy166II	GTNNAC	3 cut(s)	718, 1030, 1101
Hpy188I	TCNGA	7 cut(s)	63, 358, 493, 586, 624, 1107, 1194
Hpy188III	TCNNGA	9 cut(s)	44, 77, 177, 250, 283, 377, 940, 994, 1173
Hpy8I	GTNNAC	3 cut(s)	718, 1030, 1101
HpyAV	CCTTC	1 cut(s)	1190
HpyCH4III	ACNGT	4 cut(s)	30, 457, 879, 1213
HpyCH4IV	ACGT	2 cut(s)	755, 1169
HpyCH4V	TGCA	7 cut(s)	113, 437, 449, 611, 984, 1151, 1209
HpyF10VI	GCNNNNNNNGC	2 cut(s)	889, 917
HpyF3I	CTNAG	8 cut(s)	327, 623, 802, 1041, 1085, 1104, 1191, 1266
HpySE526I	ACGT	2 cut(s)	755, 1169
Hsp92I	GRCGYC	1 cut(s)	556
Hsp92II	CATG	5 cut(s)	142, 226, 672, 770, 1097
KflI	GGGWCCC	1 cut(s)	1261
Kzo9I	GATC	4 cut(s)	647, 737, 860, 976
LmnI	GCTCC	4 cut(s)	379, 428, 846, 1288
Lsp1109I	GCAGC	2 cut(s)	820, 895
LweI	GCATC	3 cut(s)	361, 460, 1226
MaeI	CTAG	5 cut(s)	33, 177, 234, 665, 1173
MaeII	ACGT	2 cut(s)	755, 1169
MaeIII	GTNAC	3 cut(s)	24, 526, 641
MalI	GATC	4 cut(s)	649, 739, 862, 978
MboI	GATC	4 cut(s)	647, 737, 860, 976
MboII	GAAGA	5 cut(s)	50, 59, 198, 288, 908
MhlI	GDGCHC	2 cut(s)	41, 1199
MlsI	TGGCCA	1 cut(s)	500
MluCI	AATT	9 cut(s)	70, 82, 403, 580, 732, 812, 946, 1146, 1241
MluNI	TGGCCA	1 cut(s)	500
MlyI	GAGTC	2 cut(s)	1185, 1327
MmeI	TCCRAC	1 cut(s)	390
Mox20I	TGGCCA	1 cut(s)	500
MroXI	GAANNNNTTC	1 cut(s)	54
MscI	TGGCCA	1 cut(s)	500
MseI	TTAA	2 cut(s)	789, 1275
MslI	CAYNNNNRTG	2 cut(s)	667, 1008
Msp20I	TGGCCA	1 cut(s)	500
MspA1I	CMGCKG	2 cut(s)	908, 1329
MspCI	CTTAAG	1 cut(s)	788
MspI	CCGG	1 cut(s)	317
MvnI	CGCG	1 cut(s)	774
MwoI	GCNNNNNNNGC	2 cut(s)	889, 917
NdeI	CATATG	1 cut(s)	1185
NdeII	GATC	4 cut(s)	647, 737, 860, 976
NlaIII	CATG	5 cut(s)	142, 226, 672, 770, 1097
NlaIV	GGNNCC	5 cut(s)	38, 522, 870, 1262, 1263
NmuCI	GTSAC	2 cut(s)	24, 641
NspI	RCATGY	1 cut(s)	142
OliI	CACNNNNGTG	1 cut(s)	1008
PaqCI	CACCTGC	1 cut(s)	1214
PcsI	WCGNNNNNNNCGW	1 cut(s)	1166
PdmI	GAANNNNTTC	1 cut(s)	54
PfeI	GAWTC	4 cut(s)	226, 237, 602, 1108
PkrI	GCNGC	3 cut(s)	710, 810, 910
PleI	GAGTC	2 cut(s)	1184, 1326
PpsI	GAGTC	2 cut(s)	1184, 1326
PpuMI	RGGWCCY	2 cut(s)	521, 1261
Psp5II	RGGWCCY	2 cut(s)	521, 1261
PspN4I	GGNNCC	5 cut(s)	38, 522, 870, 1262, 1263
PspPI	GGNCC	2 cut(s)	521, 1261
PspPPI	RGGWCCY	2 cut(s)	521, 1261
PstNI	CAGNNNCTG	2 cut(s)	622, 911
PvuII	CAGCTG	1 cut(s)	908
RsaI	GTAC	2 cut(s)	591, 758
RsaNI	GTAC	2 cut(s)	590, 757
RseI	CAYNNNNRTG	2 cut(s)	667, 1008
SaqAI	TTAA	2 cut(s)	789, 1275
SatI	GCNGC	3 cut(s)	709, 809, 909
Sau3AI	GATC	4 cut(s)	647, 737, 860, 976
Sau96I	GGNCC	2 cut(s)	521, 1261
SchI	GAGTC	2 cut(s)	1185, 1327
SduI	GDGCHC	2 cut(s)	41, 1199
SfaNI	GCATC	3 cut(s)	361, 460, 1226
SfcI	CTRYAG	2 cut(s)	193, 270
SinI	GGWCC	2 cut(s)	521, 1261
SmiMI	CAYNNNNRTG	2 cut(s)	667, 1008
SmlI	CTYRAG	3 cut(s)	147, 631, 788
SmoI	CTYRAG	3 cut(s)	147, 631, 788
Sse9I	AATT	9 cut(s)	70, 82, 403, 580, 732, 812, 946, 1146, 1241
SsiI	CCGC	2 cut(s)	709, 1327
SspMI	CTAG	5 cut(s)	33, 177, 234, 665, 1173
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	4 cut(s)	30, 457, 879, 1213
TaiI	ACGT	2 cut(s)	758, 1172
TasI	AATT	9 cut(s)	70, 82, 403, 580, 732, 812, 946, 1146, 1241
TatI	WGTACW	1 cut(s)	589
TauI	GCSGC	1 cut(s)	711
TfiI	GAWTC	4 cut(s)	226, 237, 602, 1108
Tru1I	TTAA	2 cut(s)	789, 1275
Tru9I	TTAA	2 cut(s)	789, 1275
TscAI	CASTG	6 cut(s)	372, 538, 870, 884, 1039, 1242
TseFI	GTSAC	2 cut(s)	24, 641
TseI	GCWGC	2 cut(s)	808, 908
Tsp45I	GTSAC	2 cut(s)	24, 641
TspDTI	ATGAA	7 cut(s)	85, 233, 239, 783, 1082, 1086, 1172
TspRI	CASTG	6 cut(s)	372, 538, 870, 884, 1039, 1242
Vha464I	CTTAAG	1 cut(s)	788
VpaK11BI	GGWCC	2 cut(s)	521, 1261
XapI	RAATTY	4 cut(s)	70, 82, 403, 946
XbaI	TCTAGA	2 cut(s)	176, 1172
XceI	RCATGY	1 cut(s)	142
XcmI	CCANNNNNNNNNTGG	1 cut(s)	566
XmnI	GAANNNNTTC	1 cut(s)	54
XspI	CTAG	5 cut(s)	33, 177, 234, 665, 1173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.