AT5G27080

Cell division cycle 20.2, cofactor of APC complex-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
9529753 .. 9531081
1329 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G27080.1

Sequence Viewer

Length: 1329 bp
ATGGATTCGGATACGTGTACAGTTCCAGACCACTTTCTTCCGAGGAAACTTTCCAAGCAAAACTTGGACAGATTCATCCCAAACAGATCCGCCATGGATTTCGATTTTGCTAACTACGCTCTTACCCAAGGAAGAAAACGTAATGTCGATGAGATAACTTCAGCATCAAGAAAAGCCTACATGACGCAATTGGCTGTGGTTATGAATCAGAATCGCACCCGTATTCTTGCTTTCAGAAACAAACCTAAAGCTCTGCTTTCTAGCAATCACTCTGATTCTCCTCACCAAAACCCTAAATCCGTAAAGCCTCGTAGATACATTCCTCAGAATAGTGAGAGAGTCTTGGATGCACCTGGTCTTATGGATGACTTCTACCTTAACTTGTTGGACTGGGGCAGTGCTAACGTCTTAGCCATTGCTTTGGGAGACACCGTTTACTTGTGGGATGCTTCCAGTGGCTCTACGTCTGAGCTTGTGACTATTGATGAAGACAAGGGACCTGTCACAAGTATTAACTGGACGCAAGATGGTCTTGATCTGGCAGTTGGTCTTGACAACAGTGAAGTCCAGCTTTGGGATTTTGTTTCCAATCGTCAAGTGAGAACATTGATAGGTGGTCACGAGTCAAGAGTAGGATCATTGGCATGGAACAATCACATTCTAACAACTGGAGGAATGGATGGAAAGATCGTCAACAATGATGTGAGGATCAGATCTTCCATTGTTGGAACTTACTTGGGTCACACTGAAGAGGTTTGTGGTCTTAAGTGGTCAGAATCTGGAAAAAAACTAGCAAGTGGTGGTAACTACAATGTAGTACACATATGGGATCATCGTTCTGTCGCTTCCTCAAAACCAACTAGGCAATGGCTGCATAGGTTTGAGGAACATACAGCTGCAGTGAGAGCTCTTGCGTGGTGCCCTTTCCAAGCAACTTTGCTTGCAACTGGTGGTGGTGTAGGAGATGGGAAGATTAAGTTCTGGAATACACACACTGGGGCTTGCTTGAATTCAGTAGAAACTGGCTCTCAAGTTTGTTCATTACTATGGAGCCAAAGGGAAAGAGAGTTGCTTAGCTCACATGGGTTTACACAGAACCAGCTTACACTTTGGAAGTACCCATCTATGTCGAAAATGGCTGAACTCAATGGTCATACATCAAGAGTTCTGTTTATGGCACAGAGTCCGAATGGTTGTACCGTGGCTTCTGCAGCAGGTGACGAGAATCTTAGGCTTTGGAATGTTTTTGGAGAACCACCAAAGACCACCAAGAAAGCTGCTTCAAAAAATTATCTGGAGCTATTTTCTCATGTGAATAGTCTTAGGTGA

Protein Analysis

442

Amino Acids

49.15

Weight (kDa)

8.78

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 115 - 413 1.9e-121 CDC20/Fizzy WD40 domain
Beta-prop_WDR19_1st PF23389 129 - 230 1.4e-07 WDR19 first beta-propeller
Beta-prop_THOC3 PF25174 135 - 279 3.4e-15 THOC3 beta-propeller domain
WD40_Gbeta PF25391 135 - 278 1.6e-06 G protein beta WD-40 repeat protein
Beta-prop_WDR3_1st PF25173 137 - 236 1.6e-12 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 138 - 281 2.5e-15 WDR5 beta-propeller domain
Beta-prop_EML_2 PF23414 142 - 285 1.1e-08 Echinoderm microtubule-associated protein second beta-propeller
WD40_Prp19 PF24814 143 - 216 3.2e-07 Prp19 WD40 domain
WD40_Prp19 PF24814 217 - 414 8.5e-22 Prp19 WD40 domain
Beta-prop_WDR3_1st PF25173 222 - 372 8.8e-15 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 242 - 359 3.8e-11 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 248 - 358 4.2e-19 THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 293 - 415 7.8e-06 WDR36/Utp21 second beta-propeller domain
Beta-prop_EML PF23409 294 - 424 6.1e-08 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR5 PF25175 295 - 415 2e-11 WDR5 beta-propeller domain
Beta-prop_EML_2 PF23414 302 - 419 3.1e-07 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_2nd PF25172 311 - 415 9e-08 WDR3 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 344 - 418 4e-07 WDR3 first beta-propeller domain
Beta-prop_THOC3 PF25174 345 - 415 2.7e-08 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1205
Acc36I ACCTGC 1 cut(s) 1205
AccB1I GGYRCC 1 cut(s) 918
AciI CCGC 1 cut(s) 90
AclWI GGATC 4 cut(s) 81, 643, 716, 837
AcsI RAATTY 1 cut(s) 1009
AcuI CTGAAG 2 cut(s) 144, 768
AfaI GTAC 4 cut(s) 19, 819, 1118, 1198
AfiI CCNNNNNNNGG 1 cut(s) 574
AflII CTTAAG 1 cut(s) 764
AflIII ACRYGT 1 cut(s) 14
AgsI TTSAA 2 cut(s) 1009, 1284
AjnI CCWGG 1 cut(s) 352
AluBI AGCT 9 cut(s) 251, 472, 571, 896, 908, 1077, 1102, 1277, 1300
AluI AGCT 9 cut(s) 251, 472, 571, 896, 908, 1077, 1102, 1277, 1300
Alw21I GWGCWC 1 cut(s) 910
Alw26I GTCTC 1 cut(s) 420
AlwI GGATC 4 cut(s) 81, 643, 716, 837
AlwNI CAGNNNCTG 1 cut(s) 779
ApeKI GCWGC 4 cut(s) 871, 896, 1211, 1277
ApoI RAATTY 1 cut(s) 1009
AspS9I GGNCC 1 cut(s) 497
AsuHPI GGTGA 2 cut(s) 275, 1229
AvaII GGWCC 1 cut(s) 497
BaeGI GKGCMC 1 cut(s) 923
BanI GGYRCC 1 cut(s) 918
BanII GRGCYC 1 cut(s) 910
BarI GAAGNNNNNNTAC 2 cut(s) 1189, 1221
BauI CACGAG 1 cut(s) 620
BbsI GAAGAC 1 cut(s) 495
Bbv12I GWGCWC 1 cut(s) 910
BbvI GCAGC 4 cut(s) 858, 883, 1223, 1264
BccI CCATC 4 cut(s) 521, 674, 959, 1129
BciT130I CCWGG 1 cut(s) 354
BciVI GTATCC 1 cut(s) 4
BcoDI GTCTC 1 cut(s) 420
BfaI CTAG 3 cut(s) 261, 791, 861
BfmI CTRYAG 2 cut(s) 897, 1209
BfrI CTTAAG 1 cut(s) 764
BfuAI ACCTGC 1 cut(s) 1205
BfuI GTATCC 1 cut(s) 4
BglII AGATCT 1 cut(s) 713
BisI GCNGC 4 cut(s) 872, 897, 1212, 1278
BlpI GCTNAGC 1 cut(s) 1073
BlsI GCNGC 4 cut(s) 873, 898, 1213, 1279
Bme1390I CCNGG 1 cut(s) 354
Bme18I GGWCC 1 cut(s) 497
BmgT120I GGNCC 1 cut(s) 497
BmiI GGNNCC 3 cut(s) 498, 920, 1052
BmrFI CCNGG 1 cut(s) 354
BmrI ACTGGG 2 cut(s) 400, 1005
BmsI GCATC 3 cut(s) 173, 337, 436
BmuI ACTGGG 2 cut(s) 400, 1005
BpiI GAAGAC 1 cut(s) 495
BpmI CTGGAG 2 cut(s) 690, 1316
Bpu1102I GCTNAGC 1 cut(s) 1073
BpuEI CTTGAG 1 cut(s) 1014
BsaAI YACGTR 1 cut(s) 15
BsaJI CCNNGG 4 cut(s) 41, 93, 127, 1200
BsaXI ACNNNNNCTCC 2 cut(s) 417, 447
Bsc4I CCNNNNNNNGG 1 cut(s) 574
Bse1I ACTGG 7 cut(s) 395, 453, 521, 673, 952, 1000, 1027
Bse3DI GCAATG 2 cut(s) 414, 872
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 4 cut(s) 41, 93, 127, 1200
BseGI GGATG 5 cut(s) 75, 352, 370, 451, 685
BseLI CCNNNNNNNGG 1 cut(s) 574
BseMI GCAATG 2 cut(s) 414, 872
BseMII CTCAG 2 cut(s) 338, 459
BseNI ACTGG 7 cut(s) 395, 453, 521, 673, 952, 1000, 1027
BseRI GAGGAG 1 cut(s) 270
BseSI GKGCMC 1 cut(s) 923
BseXI GCAGC 4 cut(s) 858, 883, 1223, 1264
BshNI GGYRCC 1 cut(s) 918
BsiHKAI GWGCWC 1 cut(s) 910
BslFI GGGAC 1 cut(s) 510
BslI CCNNNNNNNGG 1 cut(s) 574
BsmAI GTCTC 1 cut(s) 420
BsmFI GGGAC 1 cut(s) 510
Bsp1286I GDGCHC 2 cut(s) 910, 923
Bsp1407I TGTACA 1 cut(s) 17
Bsp143I GATC 7 cut(s) 86, 535, 635, 687, 708, 713, 829
Bsp1720I GCTNAGC 1 cut(s) 1073
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 1 cut(s) 90
BspCNI CTCAG 2 cut(s) 337, 460
BspLI GGNNCC 3 cut(s) 498, 920, 1052
BspMAI CTGCAG 2 cut(s) 901, 1213
BspMI ACCTGC 1 cut(s) 1205
BspPI GGATC 4 cut(s) 81, 643, 716, 837
BspT107I GGYRCC 1 cut(s) 918
BspTI CTTAAG 1 cut(s) 764
BsrDI GCAATG 2 cut(s) 414, 872
BsrGI TGTACA 1 cut(s) 17
BsrI ACTGG 7 cut(s) 395, 453, 521, 673, 952, 1000, 1027
BssECI CCNNGG 4 cut(s) 41, 93, 127, 1200
BssMI GATC 7 cut(s) 86, 535, 635, 687, 708, 713, 829
BssSI CACGAG 1 cut(s) 620
BssT1I CCWWGG 2 cut(s) 93, 127
Bst2BI CACGAG 1 cut(s) 620
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 4 cut(s) 22, 433, 560, 1201
Bst6I CTCTTC 1 cut(s) 744
BstAFI CTTAAG 1 cut(s) 764
BstAPI GCANNNNNTGC 1 cut(s) 871
BstAUI TGTACA 1 cut(s) 17
BstBAI YACGTR 1 cut(s) 15
BstC8I GCNNGC 2 cut(s) 942, 1003
BstDEI CTNAG 6 cut(s) 324, 409, 468, 1073, 1229, 1322
BstDSI CCRYGG 2 cut(s) 93, 1200
BstF5I GGATG 5 cut(s) 75, 352, 370, 451, 685
BstKTI GATC 7 cut(s) 89, 538, 638, 690, 711, 716, 832
BstMAI GTCTC 1 cut(s) 420
BstMBI GATC 7 cut(s) 86, 535, 635, 687, 708, 713, 829
BstMWI GCNNNNNNNGC 4 cut(s) 116, 871, 905, 1211
BstNI CCWGG 1 cut(s) 354
BstSCI CCNGG 1 cut(s) 352
BstSFI CTRYAG 2 cut(s) 897, 1209
BstSLI GKGCMC 1 cut(s) 923
BstV1I GCAGC 4 cut(s) 858, 883, 1223, 1264
BstV2I GAAGAC 1 cut(s) 495
BstX2I RGATCY 2 cut(s) 86, 713
BstXI CCANNNNNNTGG 1 cut(s) 421
BstYI RGATCY 2 cut(s) 86, 713
BsuI GTATCC 1 cut(s) 4
BtgI CCRYGG 2 cut(s) 93, 1200
BtsCI GGATG 5 cut(s) 75, 352, 370, 451, 685
BtsI GCAGTG 2 cut(s) 403, 906
BtsIMutI CAGTG 6 cut(s) 403, 460, 565, 744, 906, 993
BveI ACCTGC 1 cut(s) 1205
Cac8I GCNNGC 2 cut(s) 942, 1003
CaiI CAGNNNCTG 1 cut(s) 779
Cfr13I GGNCC 1 cut(s) 497
CseI GACGC 2 cut(s) 193, 529
CsiI ACCWGGT 1 cut(s) 352
Csp6I GTAC 4 cut(s) 18, 818, 1117, 1197
CviAII CATG 5 cut(s) 94, 181, 645, 1082, 1310
CviQI GTAC 4 cut(s) 18, 818, 1117, 1197
DdeI CTNAG 6 cut(s) 324, 409, 468, 1073, 1229, 1322
DpnI GATC 7 cut(s) 88, 537, 637, 689, 710, 715, 831
DpnII GATC 7 cut(s) 86, 535, 635, 687, 708, 713, 829
Eam1104I CTCTTC 1 cut(s) 744
EarI CTCTTC 1 cut(s) 744
EciI GGCGGA 1 cut(s) 79
Ecl136II GAGCTC 1 cut(s) 908
Eco130I CCWWGG 2 cut(s) 93, 127
Eco24I GRGCYC 1 cut(s) 910
Eco47I GGWCC 1 cut(s) 497
Eco53kI GAGCTC 1 cut(s) 908
Eco57I CTGAAG 2 cut(s) 144, 768
EcoICRI GAGCTC 1 cut(s) 908
EcoO109I RGGNCCY 1 cut(s) 497
EcoRI GAATTC 1 cut(s) 1009
EcoRII CCWGG 1 cut(s) 352
EcoT14I CCWWGG 2 cut(s) 93, 127
EcoT38I GRGCYC 1 cut(s) 910
ErhI CCWWGG 2 cut(s) 93, 127
FaeI CATG 5 cut(s) 97, 184, 648, 1085, 1313
FalI AAGNNNNNCTT 8 cut(s) 47, 79, 240, 272, 516, 548, 555, 587
FaqI GGGAC 1 cut(s) 510
FatI CATG 5 cut(s) 93, 180, 644, 1081, 1309
FauNDI CATATG 1 cut(s) 824
Fnu4HI GCNGC 4 cut(s) 872, 897, 1212, 1278
FokI GGATG 5 cut(s) 62, 359, 377, 458, 692
FriOI GRGCYC 1 cut(s) 910
Fsp4HI GCNGC 4 cut(s) 872, 897, 1212, 1278
FspBI CTAG 3 cut(s) 261, 791, 861
GluI GCNGC 4 cut(s) 872, 897, 1212, 1278
GsuI CTGGAG 2 cut(s) 690, 1316
HgaI GACGC 2 cut(s) 193, 529
Hin1II CATG 5 cut(s) 97, 184, 648, 1085, 1313
HincII GTYRAC 1 cut(s) 694
HindII GTYRAC 1 cut(s) 694
HphI GGTGA 2 cut(s) 275, 1229
Hpy166II GTNNAC 5 cut(s) 18, 436, 694, 820, 1089
Hpy8I GTNNAC 5 cut(s) 18, 436, 694, 820, 1089
HpyCH4III ACNGT 4 cut(s) 22, 433, 560, 1201
HpyCH4IV ACGT 4 cut(s) 14, 139, 405, 464
HpyCH4V TGCA 5 cut(s) 350, 874, 899, 944, 1211
HpyF10VI GCNNNNNNNGC 4 cut(s) 116, 871, 905, 1211
HpyF3I CTNAG 6 cut(s) 324, 409, 468, 1073, 1229, 1322
HpySE526I ACGT 4 cut(s) 14, 139, 405, 464
Hsp92II CATG 5 cut(s) 97, 184, 648, 1085, 1313
Kzo9I GATC 7 cut(s) 86, 535, 635, 687, 708, 713, 829
LmnI GCTCC 2 cut(s) 1050, 1297
Lsp1109I GCAGC 4 cut(s) 858, 883, 1223, 1264
LweI GCATC 3 cut(s) 173, 337, 436
MabI ACCWGGT 1 cut(s) 352
MaeI CTAG 3 cut(s) 261, 791, 861
MaeII ACGT 4 cut(s) 14, 139, 405, 464
MaeIII GTNAC 6 cut(s) 475, 502, 617, 740, 803, 1217
MalI GATC 7 cut(s) 88, 537, 637, 689, 710, 715, 831
MboI GATC 7 cut(s) 86, 535, 635, 687, 708, 713, 829
MboII GAAGA 6 cut(s) 29, 144, 500, 708, 761, 982
MfeI CAATTG 1 cut(s) 188
MflI RGATCY 2 cut(s) 86, 713
MhlI GDGCHC 2 cut(s) 910, 923
MluCI AATT 3 cut(s) 188, 1009, 1288
MlyI GAGTC 3 cut(s) 348, 632, 1192
MmeI TCCRAC 2 cut(s) 366, 706
MnlI CCTC 9 cut(s) 36, 291, 318, 333, 665, 699, 745, 859, 877
MseI TTAA 4 cut(s) 378, 513, 765, 975
MslI CAYNNNNRTG 2 cut(s) 643, 1045
MspA1I CMGCKG 1 cut(s) 896
MspCI CTTAAG 1 cut(s) 764
MspR9I CCNGG 1 cut(s) 354
MunI CAATTG 1 cut(s) 188
MvaI CCWGG 1 cut(s) 354
MwoI GCNNNNNNNGC 4 cut(s) 116, 871, 905, 1211
NcoI CCATGG 1 cut(s) 93
NdeI CATATG 1 cut(s) 824
NdeII GATC 7 cut(s) 86, 535, 635, 687, 708, 713, 829
NlaIII CATG 5 cut(s) 97, 184, 648, 1085, 1313
NlaIV GGNNCC 3 cut(s) 498, 920, 1052
NmuCI GTSAC 5 cut(s) 475, 502, 617, 740, 1217
PaqCI CACCTGC 1 cut(s) 1205
PfeI GAWTC 7 cut(s) 5, 72, 205, 211, 275, 776, 1225
PkrI GCNGC 4 cut(s) 873, 898, 1213, 1279
PleI GAGTC 3 cut(s) 347, 631, 1191
PpsI GAGTC 3 cut(s) 347, 631, 1191
Ppu21I YACGTR 1 cut(s) 15
PpuMI RGGWCCY 1 cut(s) 497
Psp124BI GAGCTC 1 cut(s) 910
Psp5II RGGWCCY 1 cut(s) 497
Psp6I CCWGG 1 cut(s) 352
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 3 cut(s) 498, 920, 1052
PspPI GGNCC 1 cut(s) 497
PspPPI RGGWCCY 1 cut(s) 497
PstI CTGCAG 2 cut(s) 901, 1213
PstNI CAGNNNCTG 1 cut(s) 779
PsuI RGATCY 2 cut(s) 86, 713
PvuII CAGCTG 1 cut(s) 896
RsaI GTAC 4 cut(s) 19, 819, 1118, 1198
RsaNI GTAC 4 cut(s) 18, 818, 1117, 1197
RseI CAYNNNNRTG 2 cut(s) 643, 1045
SacI GAGCTC 1 cut(s) 910
SaqAI TTAA 4 cut(s) 378, 513, 765, 975
SatI GCNGC 4 cut(s) 872, 897, 1212, 1278
Sau3AI GATC 7 cut(s) 86, 535, 635, 687, 708, 713, 829
Sau96I GGNCC 1 cut(s) 497
SchI GAGTC 3 cut(s) 348, 632, 1192
ScrFI CCNGG 1 cut(s) 354
SduI GDGCHC 2 cut(s) 910, 923
SexAI ACCWGGT 1 cut(s) 352
SfaNI GCATC 3 cut(s) 173, 337, 436
SfcI CTRYAG 2 cut(s) 897, 1209
SinI GGWCC 1 cut(s) 497
SmiMI CAYNNNNRTG 2 cut(s) 643, 1045
SmlI CTYRAG 2 cut(s) 764, 1029
SmoI CTYRAG 2 cut(s) 764, 1029
Sse9I AATT 3 cut(s) 188, 1009, 1288
SsiI CCGC 1 cut(s) 90
SspMI CTAG 3 cut(s) 261, 791, 861
SstI GAGCTC 1 cut(s) 910
StyD4I CCNGG 1 cut(s) 352
StyI CCWWGG 2 cut(s) 93, 127
TaaI ACNGT 4 cut(s) 22, 433, 560, 1201
TaiI ACGT 4 cut(s) 17, 142, 408, 467
TaqI TCGA 3 cut(s) 102, 147, 1130
TasI AATT 3 cut(s) 188, 1009, 1288
TatI WGTACW 2 cut(s) 17, 817
TfiI GAWTC 7 cut(s) 5, 72, 205, 211, 275, 776, 1225
Tru1I TTAA 4 cut(s) 378, 513, 765, 975
Tru9I TTAA 4 cut(s) 378, 513, 765, 975
TscAI CASTG 6 cut(s) 403, 460, 565, 751, 906, 1000
TseFI GTSAC 5 cut(s) 475, 502, 617, 740, 1217
TseI GCWGC 4 cut(s) 871, 896, 1211, 1277
Tsp45I GTSAC 5 cut(s) 475, 502, 617, 740, 1217
TspDTI ATGAA 4 cut(s) 64, 218, 501, 1029
TspGWI ACGGA 1 cut(s) 289
TspRI CASTG 6 cut(s) 403, 460, 565, 751, 906, 1000
Vha464I CTTAAG 1 cut(s) 764
VpaK11BI GGWCC 1 cut(s) 497
XapI RAATTY 1 cut(s) 1009
XcmI CCANNNNNNNNNTGG 2 cut(s) 61, 864
XspI CTAG 3 cut(s) 261, 791, 861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.