AT5G26900

Cell division cycle 20.2, cofactor of APC complex-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002111
Physical Location & Seq
Forward (+)
9463752 .. 9465086
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G26900.1

Sequence Viewer

Length: 1335 bp
ATGGATTCGGGTATGAGAGCTACGTGTACAGTTCCAGAACACTTTCTTCCGAGGAAACTTTCCAAGCAAAACTTGGACAGATTCATCCCAAACAGATCCGCCAAGGATTTCGATTTTGCTAACTACGCTCTTACCCAAGGAAGCAAACGTAACCTCGATGAGGTAACTTCAGCATCAAGAAAAGCCTACATGACGCAATTGGCTGTGGTTATGAATCAGAATCGCACCCGTATTCTCGCTTTCAGAAACAAACCTAAATCTCTGCTTTCTACCAATCACTCTGACTCTCCTCACCAAAACCCTAAACCCGTAAAGCCTCGTAGATACATTCCTCAGAATAGTGAGAGAGTCTTGGATGCACCTGGACTTAGGGATGACTTCTCCCTTAACTTGTTGGACTGGGGCAGTGCTAACGTCTTAGCCATAGCTTTGGGAGACACTGTTTACTTGTGGGATGCTTCCAGTGGCTCTACGTCTGAGCTTGTGACTATTGATGAAGACAAGGGACCTGTCACAAGTATTAACTGGACACAAGATGGTCTTGATCTGGCAGTTGGTCTTGACAACAGTGAAGTCCAGCTTTGGGATTGTGTTTCCAATCGTCAAGTGAGAACATTGAGAGGTGGTCACGAGTCAAGAGTAGGATCACTGGCATGGGACAATCACATTCTAACAACTGGAGGAATGGATGGAAAGATCGTCAACAATGATGTGAGGATCAGATCATCTATTGTTGAAACTTACTTGGGTCACACTGAAGAGGTTTGTGGTCTTAAGTGGTCAGAATCTGGAAATAAACAAGCAAGTGGTGGTAACGACAATGTAGTACACATATGGGATCGTTCTCTCGCTTCCTCAAAACAAACTAGGCAATGGCTGCATAGGTTTGAGGAACATACAGCTGCAGTGAGAGCTCTTGCGTGGTGCCCTTTCCAAGCAAGTTTGCTTGCAACTGGTGGTGGTGTAGGAGATGGGAAGATTAAGTTCTGGAATACACACACTGGGGCTTGCTTGAATTCAGTAGAAACTGGCTCTCAAGTTTGTTCATTATTATGGAGCCAAAGTGAAAGAGAGTTGCTTAGCTCACATGGGTTTACACAGAACCAGCTTACACTTTGGAAGTACCCATCTATGTCGAAAATGGCTGAACTCAATGGTCATACATCAAGAGTTCTGTTTATGGCACAGAGTCCGAATGGTTGTACCGTGGCTTCTGCAGCAGGTGACGAGAATCTTAGGCTTTGGAATGTTTTTGGAGAACCACCAAAGACCACCAAAAAAGCTGCTTCAAAAAAATATCCGGAGCTATTTTCTCATGTGAATAGTCTTAGGTGA

Protein Analysis

444

Amino Acids

49.23

Weight (kDa)

8.74

Isoelectric Point (pI)

43.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 118 - 415 1.9e-119 CDC20/Fizzy WD40 domain
Beta-prop_WDR19_1st PF23389 132 - 233 9.5e-07 WDR19 first beta-propeller
Beta-prop_THOC3 PF25174 137 - 280 7.1e-16 THOC3 beta-propeller domain
WDR55 PF24796 139 - 246 5.9e-06 WDR55
Beta-prop_WDR3_1st PF25173 140 - 280 9.7e-20 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 141 - 283 9.6e-16 WDR5 beta-propeller domain
WD40_Prp19 PF24814 146 - 221 5.1e-08 Prp19 WD40 domain
Beta-prop_WDR3_2nd PF25172 188 - 291 7.2e-07 WDR3 second beta-propeller domain
Beta-prop_EML_2 PF23414 188 - 308 1.2e-07 Echinoderm microtubule-associated protein second beta-propeller
WD40_Gbeta PF25391 220 - 416 8.9e-08 G protein beta WD-40 repeat protein
WD40_Prp19 PF24814 220 - 416 3.2e-23 Prp19 WD40 domain
Beta-prop_WDR3_1st PF25173 228 - 361 1.6e-13 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 244 - 350 1.1e-11 WDR5 beta-propeller domain
Beta-prop_CAF1B_HIR1 PF24105 244 - 341 2.8e-06 CAF1B/HIR1 beta-propeller domain
WD40 PF00400 245 - 280 7.2e-06 WD domain, G-beta repeat
Beta-prop_THOC3 PF25174 251 - 360 8.6e-19 THOC3 beta-propeller domain
Beta-prop_EML PF23409 296 - 427 5.3e-08 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR5 PF25175 297 - 417 2.3e-11 WDR5 beta-propeller domain
Beta-prop_EML_2 PF23414 304 - 420 2e-07 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_2nd PF25172 315 - 417 1.1e-07 WDR3 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 346 - 420 2.9e-07 WDR3 first beta-propeller domain
Beta-prop_THOC3 PF25174 346 - 417 1.2e-08 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1211
Acc36I ACCTGC 1 cut(s) 1211
AccB1I GGYRCC 1 cut(s) 924
AccIII TCCGGA 1 cut(s) 1300
AciI CCGC 1 cut(s) 99
AclWI GGATC 4 cut(s) 90, 652, 725, 846
AcsI RAATTY 1 cut(s) 1015
AcuI CTGAAG 2 cut(s) 153, 777
AfaI GTAC 4 cut(s) 28, 828, 1124, 1204
AfiI CCNNNNNNNGG 2 cut(s) 160, 583
AflII CTTAAG 1 cut(s) 773
AflIII ACRYGT 1 cut(s) 23
AgsI TTSAA 3 cut(s) 737, 1015, 1290
AjnI CCWGG 1 cut(s) 361
Alw21I GWGCWC 1 cut(s) 916
Alw26I GTCTC 1 cut(s) 429
AlwI GGATC 4 cut(s) 90, 652, 725, 846
AlwNI CAGNNNCTG 1 cut(s) 788
Aor13HI TCCGGA 1 cut(s) 1300
ApeKI GCWGC 4 cut(s) 877, 902, 1217, 1283
ApoI RAATTY 1 cut(s) 1015
Asp700I GAANNNNTTC 1 cut(s) 42
AspS9I GGNCC 1 cut(s) 506
AsuHPI GGTGA 2 cut(s) 284, 1235
AvaII GGWCC 1 cut(s) 506
BaeGI GKGCMC 1 cut(s) 929
BanI GGYRCC 1 cut(s) 924
BanII GRGCYC 1 cut(s) 916
BarI GAAGNNNNNNTAC 2 cut(s) 1195, 1227
BauI CACGAG 1 cut(s) 629
BbsI GAAGAC 1 cut(s) 504
Bbv12I GWGCWC 1 cut(s) 916
BbvI GCAGC 4 cut(s) 864, 889, 1229, 1270
BccI CCATC 4 cut(s) 530, 683, 965, 1135
BciT130I CCWGG 1 cut(s) 363
BcoDI GTCTC 1 cut(s) 429
BfaI CTAG 1 cut(s) 867
BfmI CTRYAG 2 cut(s) 903, 1215
BfrI CTTAAG 1 cut(s) 773
BfuAI ACCTGC 1 cut(s) 1211
BisI GCNGC 4 cut(s) 878, 903, 1218, 1284
BlpI GCTNAGC 1 cut(s) 1079
BlsI GCNGC 4 cut(s) 879, 904, 1219, 1285
Bme1390I CCNGG 1 cut(s) 363
Bme18I GGWCC 1 cut(s) 506
BmgT120I GGNCC 1 cut(s) 506
BmiI GGNNCC 3 cut(s) 507, 926, 1058
BmrFI CCNGG 1 cut(s) 363
BmrI ACTGGG 2 cut(s) 409, 1011
BmsI GCATC 3 cut(s) 182, 346, 445
BmuI ACTGGG 2 cut(s) 409, 1011
BpiI GAAGAC 1 cut(s) 504
BpmI CTGGAG 1 cut(s) 699
Bpu1102I GCTNAGC 1 cut(s) 1079
BpuEI CTTGAG 1 cut(s) 1020
BsaAI YACGTR 1 cut(s) 24
BsaJI CCNNGG 4 cut(s) 50, 102, 136, 1206
BsaWI WCCGGW 1 cut(s) 1300
BsaXI ACNNNNNCTCC 4 cut(s) 426, 456, 1048, 1078
Bsc4I CCNNNNNNNGG 2 cut(s) 160, 583
Bse1I ACTGG 8 cut(s) 404, 462, 530, 654, 682, 958, 1006, 1033
Bse3DI GCAATG 1 cut(s) 878
BseAI TCCGGA 1 cut(s) 1300
BseBI CCWGG 1 cut(s) 363
BseDI CCNNGG 4 cut(s) 50, 102, 136, 1206
BseGI GGATG 5 cut(s) 84, 361, 379, 460, 694
BseLI CCNNNNNNNGG 2 cut(s) 160, 583
BseMI GCAATG 1 cut(s) 878
BseMII CTCAG 2 cut(s) 347, 468
BseNI ACTGG 8 cut(s) 404, 462, 530, 654, 682, 958, 1006, 1033
BseRI GAGGAG 1 cut(s) 279
BseSI GKGCMC 1 cut(s) 929
BseXI GCAGC 4 cut(s) 864, 889, 1229, 1270
BshNI GGYRCC 1 cut(s) 924
BsiHKAI GWGCWC 1 cut(s) 916
BsiSI CCGG 1 cut(s) 1301
BslFI GGGAC 2 cut(s) 519, 671
BslI CCNNNNNNNGG 2 cut(s) 160, 583
BsmAI GTCTC 1 cut(s) 429
BsmFI GGGAC 2 cut(s) 519, 671
Bsp1286I GDGCHC 2 cut(s) 916, 929
Bsp13I TCCGGA 1 cut(s) 1300
Bsp1407I TGTACA 1 cut(s) 26
Bsp143I GATC 7 cut(s) 95, 544, 644, 696, 717, 722, 838
Bsp1720I GCTNAGC 1 cut(s) 1079
BspACI CCGC 1 cut(s) 99
BspCNI CTCAG 2 cut(s) 346, 469
BspEI TCCGGA 1 cut(s) 1300
BspLI GGNNCC 3 cut(s) 507, 926, 1058
BspMAI CTGCAG 2 cut(s) 907, 1219
BspMI ACCTGC 1 cut(s) 1211
BspPI GGATC 4 cut(s) 90, 652, 725, 846
BspT107I GGYRCC 1 cut(s) 924
BspTI CTTAAG 1 cut(s) 773
BsrDI GCAATG 1 cut(s) 878
BsrGI TGTACA 1 cut(s) 26
BsrI ACTGG 8 cut(s) 404, 462, 530, 654, 682, 958, 1006, 1033
BssECI CCNNGG 4 cut(s) 50, 102, 136, 1206
BssMI GATC 7 cut(s) 95, 544, 644, 696, 717, 722, 838
BssSI CACGAG 1 cut(s) 629
BssT1I CCWWGG 2 cut(s) 102, 136
Bst2BI CACGAG 1 cut(s) 629
Bst2UI CCWGG 1 cut(s) 363
Bst4CI ACNGT 4 cut(s) 31, 442, 569, 1207
Bst6I CTCTTC 1 cut(s) 753
BstAFI CTTAAG 1 cut(s) 773
BstAPI GCANNNNNTGC 1 cut(s) 877
BstAUI TGTACA 1 cut(s) 26
BstBAI YACGTR 1 cut(s) 24
BstC8I GCNNGC 2 cut(s) 948, 1009
BstDEI CTNAG 7 cut(s) 333, 368, 418, 477, 1079, 1235, 1328
BstDSI CCRYGG 1 cut(s) 1206
BstENI CCTNNNNNAGG 1 cut(s) 158
BstF5I GGATG 5 cut(s) 84, 361, 379, 460, 694
BstKTI GATC 7 cut(s) 98, 547, 647, 699, 720, 725, 841
BstMAI GTCTC 1 cut(s) 429
BstMBI GATC 7 cut(s) 95, 544, 644, 696, 717, 722, 838
BstMWI GCNNNNNNNGC 4 cut(s) 125, 877, 911, 1217
BstNI CCWGG 1 cut(s) 363
BstSCI CCNGG 1 cut(s) 361
BstSFI CTRYAG 2 cut(s) 903, 1215
BstSLI GKGCMC 1 cut(s) 929
BstV1I GCAGC 4 cut(s) 864, 889, 1229, 1270
BstV2I GAAGAC 1 cut(s) 504
BstX2I RGATCY 1 cut(s) 95
BstXI CCANNNNNNTGG 1 cut(s) 430
BstYI RGATCY 1 cut(s) 95
BtgI CCRYGG 1 cut(s) 1206
BtsCI GGATG 5 cut(s) 84, 361, 379, 460, 694
BtsI GCAGTG 2 cut(s) 412, 912
BtsIMutI CAGTG 8 cut(s) 412, 438, 469, 574, 647, 753, 912, 999
BveI ACCTGC 1 cut(s) 1211
Cac8I GCNNGC 2 cut(s) 948, 1009
CaiI CAGNNNCTG 1 cut(s) 788
Cfr13I GGNCC 1 cut(s) 506
CseI GACGC 1 cut(s) 202
Csp6I GTAC 4 cut(s) 27, 827, 1123, 1203
CviAII CATG 4 cut(s) 190, 654, 1088, 1316
CviQI GTAC 4 cut(s) 27, 827, 1123, 1203
DdeI CTNAG 7 cut(s) 333, 368, 418, 477, 1079, 1235, 1328
DpnI GATC 7 cut(s) 97, 546, 646, 698, 719, 724, 840
DpnII GATC 7 cut(s) 95, 544, 644, 696, 717, 722, 838
Eam1104I CTCTTC 1 cut(s) 753
EarI CTCTTC 1 cut(s) 753
EciI GGCGGA 1 cut(s) 88
Ecl136II GAGCTC 1 cut(s) 914
Eco130I CCWWGG 2 cut(s) 102, 136
Eco24I GRGCYC 1 cut(s) 916
Eco47I GGWCC 1 cut(s) 506
Eco53kI GAGCTC 1 cut(s) 914
Eco57I CTGAAG 2 cut(s) 153, 777
EcoICRI GAGCTC 1 cut(s) 914
EcoNI CCTNNNNNAGG 1 cut(s) 158
EcoO109I RGGNCCY 1 cut(s) 506
EcoRI GAATTC 1 cut(s) 1015
EcoRII CCWGG 1 cut(s) 361
EcoT14I CCWWGG 2 cut(s) 102, 136
EcoT38I GRGCYC 1 cut(s) 916
ErhI CCWWGG 2 cut(s) 102, 136
FaeI CATG 4 cut(s) 193, 657, 1091, 1319
FalI AAGNNNNNCTT 6 cut(s) 56, 88, 525, 557, 564, 596
FaqI GGGAC 2 cut(s) 519, 671
FatI CATG 4 cut(s) 189, 653, 1087, 1315
FauNDI CATATG 1 cut(s) 833
Fnu4HI GCNGC 4 cut(s) 878, 903, 1218, 1284
FokI GGATG 5 cut(s) 71, 368, 386, 467, 701
FriOI GRGCYC 1 cut(s) 916
Fsp4HI GCNGC 4 cut(s) 878, 903, 1218, 1284
FspBI CTAG 1 cut(s) 867
GluI GCNGC 4 cut(s) 878, 903, 1218, 1284
GsuI CTGGAG 1 cut(s) 699
HapII CCGG 1 cut(s) 1301
HgaI GACGC 1 cut(s) 202
Hin1II CATG 4 cut(s) 193, 657, 1091, 1319
HincII GTYRAC 1 cut(s) 703
HindII GTYRAC 1 cut(s) 703
HpaII CCGG 1 cut(s) 1301
HphI GGTGA 2 cut(s) 284, 1235
Hpy166II GTNNAC 5 cut(s) 27, 445, 703, 829, 1095
Hpy188I TCNGA 9 cut(s) 51, 219, 245, 283, 336, 478, 722, 784, 1194
Hpy8I GTNNAC 5 cut(s) 27, 445, 703, 829, 1095
HpyCH4III ACNGT 4 cut(s) 31, 442, 569, 1207
HpyCH4IV ACGT 4 cut(s) 23, 148, 414, 473
HpyCH4V TGCA 5 cut(s) 359, 880, 905, 950, 1217
HpyF10VI GCNNNNNNNGC 4 cut(s) 125, 877, 911, 1217
HpyF3I CTNAG 7 cut(s) 333, 368, 418, 477, 1079, 1235, 1328
HpySE526I ACGT 4 cut(s) 23, 148, 414, 473
Hsp92II CATG 4 cut(s) 193, 657, 1091, 1319
Kpn2I TCCGGA 1 cut(s) 1300
Kzo9I GATC 7 cut(s) 95, 544, 644, 696, 717, 722, 838
LmnI GCTCC 2 cut(s) 1056, 1303
Lsp1109I GCAGC 4 cut(s) 864, 889, 1229, 1270
LweI GCATC 3 cut(s) 182, 346, 445
MaeI CTAG 1 cut(s) 867
MaeII ACGT 4 cut(s) 23, 148, 414, 473
MaeIII GTNAC 8 cut(s) 149, 163, 484, 511, 626, 749, 812, 1223
MalI GATC 7 cut(s) 97, 546, 646, 698, 719, 724, 840
MboI GATC 7 cut(s) 95, 544, 644, 696, 717, 722, 838
MboII GAAGA 4 cut(s) 38, 509, 770, 988
MfeI CAATTG 1 cut(s) 197
MflI RGATCY 1 cut(s) 95
MhlI GDGCHC 2 cut(s) 916, 929
MluCI AATT 2 cut(s) 197, 1015
MlyI GAGTC 4 cut(s) 278, 357, 641, 1198
MmeI TCCRAC 1 cut(s) 375
MroI TCCGGA 1 cut(s) 1300
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 4 cut(s) 387, 522, 774, 981
MslI CAYNNNNRTG 2 cut(s) 652, 1051
MspA1I CMGCKG 1 cut(s) 902
MspCI CTTAAG 1 cut(s) 773
MspI CCGG 1 cut(s) 1301
MspR9I CCNGG 1 cut(s) 363
MunI CAATTG 1 cut(s) 197
MvaI CCWGG 1 cut(s) 363
MwoI GCNNNNNNNGC 4 cut(s) 125, 877, 911, 1217
NdeI CATATG 1 cut(s) 833
NdeII GATC 7 cut(s) 95, 544, 644, 696, 717, 722, 838
NlaIII CATG 4 cut(s) 193, 657, 1091, 1319
NlaIV GGNNCC 3 cut(s) 507, 926, 1058
NmuCI GTSAC 5 cut(s) 484, 511, 626, 749, 1223
PaqCI CACCTGC 1 cut(s) 1211
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 6 cut(s) 5, 81, 214, 220, 785, 1231
PkrI GCNGC 4 cut(s) 879, 904, 1219, 1285
PleI GAGTC 4 cut(s) 278, 356, 640, 1197
PpsI GAGTC 4 cut(s) 278, 356, 640, 1197
Ppu21I YACGTR 1 cut(s) 24
PpuMI RGGWCCY 1 cut(s) 506
Psp124BI GAGCTC 1 cut(s) 916
Psp5II RGGWCCY 1 cut(s) 506
Psp6I CCWGG 1 cut(s) 361
PspGI CCWGG 1 cut(s) 361
PspN4I GGNNCC 3 cut(s) 507, 926, 1058
PspPI GGNCC 1 cut(s) 506
PspPPI RGGWCCY 1 cut(s) 506
PstI CTGCAG 2 cut(s) 907, 1219
PstNI CAGNNNCTG 1 cut(s) 788
PsuI RGATCY 1 cut(s) 95
PvuII CAGCTG 1 cut(s) 902
RsaI GTAC 4 cut(s) 28, 828, 1124, 1204
RsaNI GTAC 4 cut(s) 27, 827, 1123, 1203
RseI CAYNNNNRTG 2 cut(s) 652, 1051
SacI GAGCTC 1 cut(s) 916
SaqAI TTAA 4 cut(s) 387, 522, 774, 981
SatI GCNGC 4 cut(s) 878, 903, 1218, 1284
Sau3AI GATC 7 cut(s) 95, 544, 644, 696, 717, 722, 838
Sau96I GGNCC 1 cut(s) 506
SchI GAGTC 4 cut(s) 278, 357, 641, 1198
ScrFI CCNGG 1 cut(s) 363
SduI GDGCHC 2 cut(s) 916, 929
SfaNI GCATC 3 cut(s) 182, 346, 445
SfcI CTRYAG 2 cut(s) 903, 1215
SinI GGWCC 1 cut(s) 506
SmiMI CAYNNNNRTG 2 cut(s) 652, 1051
SmlI CTYRAG 2 cut(s) 773, 1035
SmoI CTYRAG 2 cut(s) 773, 1035
Sse9I AATT 2 cut(s) 197, 1015
SsiI CCGC 1 cut(s) 99
SspMI CTAG 1 cut(s) 867
SstI GAGCTC 1 cut(s) 916
StyD4I CCNGG 1 cut(s) 361
StyI CCWWGG 2 cut(s) 102, 136
TaaI ACNGT 4 cut(s) 31, 442, 569, 1207
TaiI ACGT 4 cut(s) 26, 151, 417, 476
TaqI TCGA 3 cut(s) 111, 156, 1136
TasI AATT 2 cut(s) 197, 1015
TatI WGTACW 2 cut(s) 26, 826
TfiI GAWTC 6 cut(s) 5, 81, 214, 220, 785, 1231
Tru1I TTAA 4 cut(s) 387, 522, 774, 981
Tru9I TTAA 4 cut(s) 387, 522, 774, 981
TscAI CASTG 8 cut(s) 412, 445, 469, 574, 654, 760, 912, 1006
TseFI GTSAC 5 cut(s) 484, 511, 626, 749, 1223
TseI GCWGC 4 cut(s) 877, 902, 1217, 1283
Tsp45I GTSAC 5 cut(s) 484, 511, 626, 749, 1223
TspDTI ATGAA 4 cut(s) 73, 227, 510, 1035
TspRI CASTG 8 cut(s) 412, 445, 469, 574, 654, 760, 912, 1006
Vha464I CTTAAG 1 cut(s) 773
VpaK11BI GGWCC 1 cut(s) 506
XagI CCTNNNNNAGG 1 cut(s) 158
XapI RAATTY 1 cut(s) 1015
XcmI CCANNNNNNNNNTGG 1 cut(s) 70
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 1 cut(s) 867
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.