Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0002111

Physical Location & Seq

Genomic Coordinates Reverse (-)

1655424 .. 1656095

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g01810.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGATTCATCACGAAAGATCAAGTACCGAAGCCCTCTCCAAGAACAGTTCCTTCCGAGAAAGCGCAATCGGGAAAATTTGGACAGGTTTATACCGAATCGAGCGGCATTGGACCTTGATTACGCGAATTACATGGTCACTGGAGGGAGAAAAGGCAAAGAGAACTCGGTTGTAAGCTCTCCATCAAGTGACGCGTACCGTAAGCTACTGGATGAGACGTTTAACATGAACCGGCCGCGAATCCTGACATTCAAGGAAAAGCCGCCAACACCAGTTGAAGCCATTCCGAGGAGACTACTTTCACCCCCTCCTCGTAATGCCAAATCTGCCAAGCCCCGTCGACAGATTCCTCAGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko05166 ko05203 map04110 map04111 map04113 map04114 map04120 map05166 map05203

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

120

Amino Acids

13.82

Weight (kDa)

10.79

Isoelectric Point (pI)

62.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33260 AT4G33260 AT4G33270 AT5G26900 AT5G27080 AT5G27570
fragaria_vesca	FvH4_6g21090 FvH4_7g33570
malus_domestica	MD01G1233500.v1.1 MD04G1021900.v1.1 MD07G1305600.v1.1
prunus_persica	Prupe.1G099100_v2.0.a1 Prupe.1G099100_v2.0.a1 Prupe.1G099100_v2.0.a1 Prupe.2G129000_v2.0.a1 Prupe.2G129000_v2.0.a1 Prupe.2G323700_v2.0.a1 Prupe.7G086200_v2.0.a1 Prupe.7G089100_v2.0.a1
pyrus_communis	pycom01g24180 pycom04g01810 pycom07g27890
rosa_chinensis	RchiOBHm_Chr1g0383831 RchiOBHm_Chr3g0477471
rosa_laevigata	RLG00000023716 RLG00000026093
rosa_multiflora	Rmu_co8406979.1_g000001 Rmu_sc0033596.1_g000001 Rmu_ssc0000341.1_g000010
rosa_roxburghii	Rroxscaffold_4G00277200 Rroxscaffold_6G00403920 Rroxscaffold_6G00404600
rosa_rugosa	Rorug01G0442500 Rorug03G0161400
rosa_samantha	Rh1AG468300 Rh1BG426000 Rh1CG438700 Rh1DG458800 Rh3AG211400 Rh3BG244900 Rh3CG238800 Rh3DG238200
rosa_wichuraiana	Rw1G040410 Rw3G019160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	104
AccI	GTMKAC	1 cut(s)	340
AccII	CGCG	3 cut(s)	125, 194, 238
AciI	CCGC	3 cut(s)	104, 236, 263
AcoI	YGGCCR	1 cut(s)	233
AcsI	RAATTY	1 cut(s)	76
AfaI	GTAC	2 cut(s)	26, 197
AfiI	CCNNNNNNNGG	1 cut(s)	288
AflIII	ACRYGT	1 cut(s)	192
AgsI	TTSAA	2 cut(s)	253, 278
AluBI	AGCT	2 cut(s)	177, 205
AluI	AGCT	2 cut(s)	177, 205
Alw26I	GTCTC	2 cut(s)	209, 286
AoxI	GGCC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	76
Asp700I	GAANNNNTTC	1 cut(s)	282
AspLEI	GCGC	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	112
AsuHPI	GGTGA	1 cut(s)	294
AvaII	GGWCC	1 cut(s)	112
AxyI	CCTNAGG	1 cut(s)	351
BccI	CCATC	1 cut(s)	190
BcoDI	GTCTC	2 cut(s)	209, 286
BisI	GCNGC	3 cut(s)	105, 236, 263
BlsI	GCNGC	3 cut(s)	106, 237, 264
Bme18I	GGWCC	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	112
BpmI	CTGGAG	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	1 cut(s)	288
Bse118I	RCCGGY	1 cut(s)	231
Bse1I	ACTGG	3 cut(s)	145, 213, 272
Bse21I	CCTNAGG	1 cut(s)	351
BseDI	CCNNGG	1 cut(s)	287
BseGI	GGATG	1 cut(s)	217
BseLI	CCNNNNNNNGG	1 cut(s)	288
BseNI	ACTGG	3 cut(s)	145, 213, 272
BseRI	GAGGAG	2 cut(s)	300, 304
BseX3I	CGGCCG	1 cut(s)	233
Bsh1236I	CGCG	3 cut(s)	125, 194, 238
Bsh1285I	CGRYCG	1 cut(s)	236
BshFI	GGCC	1 cut(s)	235
BsiEI	CGRYCG	1 cut(s)	236
BsiSI	CCGG	1 cut(s)	232
BslI	CCNNNNNNNGG	1 cut(s)	288
BsmAI	GTCTC	2 cut(s)	209, 286
BsmBI	CGTCTC	1 cut(s)	209
BsnI	GGCC	1 cut(s)	235
Bsp143I	GATC	1 cut(s)	18
BspACI	CCGC	3 cut(s)	104, 236, 263
BspANI	GGCC	1 cut(s)	235
BspFNI	CGCG	3 cut(s)	125, 194, 238
BsrBI	CCGCTC	1 cut(s)	104
BsrFI	RCCGGY	1 cut(s)	231
BsrI	ACTGG	3 cut(s)	145, 213, 272
BssAI	RCCGGY	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	287
BssMI	GATC	1 cut(s)	18
Bst4CI	ACNGT	2 cut(s)	48, 200
BstDEI	CTNAG	1 cut(s)	351
BstF5I	GGATG	1 cut(s)	217
BstFNI	CGCG	3 cut(s)	125, 194, 238
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	1 cut(s)	21
BstMAI	GTCTC	2 cut(s)	209, 286
BstMBI	GATC	1 cut(s)	18
BstMCI	CGRYCG	1 cut(s)	236
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstUI	CGCG	3 cut(s)	125, 194, 238
BstZI	CGGCCG	1 cut(s)	233
Bsu36I	CCTNAGG	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	235
BtsCI	GGATG	1 cut(s)	217
BtsIMutI	CAGTG	1 cut(s)	138
CfoI	GCGC	1 cut(s)	66
Cfr10I	RCCGGY	1 cut(s)	231
Cfr13I	GGNCC	1 cut(s)	112
CseI	GACGC	1 cut(s)	200
Csp6I	GTAC	2 cut(s)	25, 196
CviAII	CATG	2 cut(s)	133, 226
CviJI	RGCY	7 cut(s)	33, 177, 205, 235, 262, 281, 334
CviKI_1	RGCY	7 cut(s)	33, 177, 205, 235, 262, 281, 334
CviQI	GTAC	2 cut(s)	25, 196
DdeI	CTNAG	1 cut(s)	351
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
EaeI	YGGCCR	1 cut(s)	233
EagI	CGGCCG	1 cut(s)	233
EclXI	CGGCCG	1 cut(s)	233
Eco47I	GGWCC	1 cut(s)	112
Eco52I	CGGCCG	1 cut(s)	233
Eco81I	CCTNAGG	1 cut(s)	351
Esp3I	CGTCTC	1 cut(s)	209
FaeI	CATG	2 cut(s)	136, 229
FaiI	YATR	4 cut(s)	92, 134, 227, 358
FatI	CATG	2 cut(s)	132, 225
FblI	GTMKAC	1 cut(s)	340
Fnu4HI	GCNGC	3 cut(s)	105, 236, 263
FokI	GGATG	1 cut(s)	224
Fsp4HI	GCNGC	3 cut(s)	105, 236, 263
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	3 cut(s)	105, 236, 263
GsuI	CTGGAG	1 cut(s)	162
HaeIII	GGCC	1 cut(s)	235
HapII	CCGG	1 cut(s)	232
HgaI	GACGC	1 cut(s)	200
HhaI	GCGC	1 cut(s)	66
Hin1II	CATG	2 cut(s)	136, 229
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HincII	GTYRAC	1 cut(s)	341
HindII	GTYRAC	1 cut(s)	341
HinfI	GANTC	4 cut(s)	5, 97, 240, 346
HpaII	CCGG	1 cut(s)	232
HphI	GGTGA	1 cut(s)	294
Hpy166II	GTNNAC	1 cut(s)	341
Hpy188I	TCNGA	2 cut(s)	57, 288
Hpy188III	TCNNGA	3 cut(s)	12, 71, 244
Hpy8I	GTNNAC	1 cut(s)	341
Hpy99I	CGWCG	1 cut(s)	342
HpyAV	CCTTC	1 cut(s)	62
HpyCH4III	ACNGT	2 cut(s)	48, 200
HpyCH4IV	ACGT	1 cut(s)	218
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpyF3I	CTNAG	1 cut(s)	351
HpySE526I	ACGT	1 cut(s)	218
Hsp92II	CATG	2 cut(s)	136, 229
HspAI	GCGC	1 cut(s)	64
Kzo9I	GATC	1 cut(s)	18
LpnPI	CCDG	7 cut(s)	70, 126, 194, 245, 257, 285, 338
MaeII	ACGT	1 cut(s)	218
MaeIII	GTNAC	2 cut(s)	136, 188
MalI	GATC	1 cut(s)	20
MbiI	CCGCTC	1 cut(s)	104
MboI	GATC	1 cut(s)	18
MluCI	AATT	2 cut(s)	76, 127
MluI	ACGCGT	1 cut(s)	192
MnlI	CCTC	6 cut(s)	45, 137, 282, 318, 321, 360
MroXI	GAANNNNTTC	1 cut(s)	282
MseI	TTAA	1 cut(s)	222
MspI	CCGG	1 cut(s)	232
MvnI	CGCG	3 cut(s)	125, 194, 238
MwoI	GCNNNNNNNGC	1 cut(s)	326
NdeII	GATC	1 cut(s)	18
NlaIII	CATG	2 cut(s)	136, 229
NmuCI	GTSAC	2 cut(s)	136, 188
PdmI	GAANNNNTTC	1 cut(s)	282
PfeI	GAWTC	4 cut(s)	5, 97, 240, 346
PkrI	GCNGC	3 cut(s)	106, 237, 264
PspPI	GGNCC	1 cut(s)	112
RsaI	GTAC	2 cut(s)	26, 197
RsaNI	GTAC	2 cut(s)	25, 196
SalI	GTCGAC	1 cut(s)	339
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	3 cut(s)	105, 236, 263
Sau3AI	GATC	1 cut(s)	18
Sau96I	GGNCC	1 cut(s)	112
SetI	ASST	6 cut(s)	89, 117, 179, 207, 221, 357
SinI	GGWCC	1 cut(s)	112
Sse9I	AATT	2 cut(s)	76, 127
SsiI	CCGC	3 cut(s)	104, 236, 263
TaaI	ACNGT	2 cut(s)	48, 200
TaiI	ACGT	1 cut(s)	221
TaqI	TCGA	2 cut(s)	100, 340
TasI	AATT	2 cut(s)	76, 127
TauI	GCSGC	3 cut(s)	107, 238, 265
TfiI	GAWTC	4 cut(s)	5, 97, 240, 346
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	1 cut(s)	145
TseFI	GTSAC	2 cut(s)	136, 188
Tsp45I	GTSAC	2 cut(s)	136, 188
TspDTI	ATGAA	1 cut(s)	242
TspRI	CASTG	1 cut(s)	145
VpaK11BI	GGWCC	1 cut(s)	112
XapI	RAATTY	1 cut(s)	76
XmiI	GTMKAC	1 cut(s)	340
XmnI	GAANNNNTTC	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.