Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8406979.1

Orthogroup ID

OG0002111

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1117

Gene Structure 1117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8406979.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

aatcttttatttgatgtgtgtgtgcagacctcagagaggacattggatgctcctgaccttgtcgatgactactacctcaatctgttggattggggaagtgccaatgtactcgcaattgctctcgcaaacacagtttacttgtgggatgctagcactggctctacttcggaattggagacttttgatgatgaaactggacctgtaaccagtgtcagttgggctcctgatggacgccacattgccgttggacttaacaattccgaagtacagctgtgggactcaactgctactaagcagctgaggactttgagaggttgccatagttcgcgagttggctcattggcatggaacaacaacattctttctactggaggaatggacggctgtattgtcaacaatgatgtgagagttagatcccacattgttgagacctacagagggcatgagcaagaggtttgtggacttaaatggtcagcctcagggcagcaattggcgagtggaggaaatgacaacctactgcatatatgggacagatcagttgcatcttcacagtcatcaacacagtggcttcacaggcttgaagatcatacagctgctgttaaagcccttgcttggtgtccattccagagcaacttgcttgcttccggtggaggtgggggtgatcggtgcataaagttctggaacacccacacaggtgcatgcttgaactcagtagacactgggtctcaggtttgctctctgctttggaacaagaatgaaagggagttgcttagctcacacgggtttacacagaaccagctgactctttggaagtacccatccatggttaaaatggcagaacttacaggtcacacttccagggttctttatatggctcagagtccggatggttgcacagtagcatcggcagctggtgatgaaaccctgagattctggaatgtctttggtgtccctgaggtggctaaaccagctcctaaagctcattctgaaccttttgctcatatgaaccgtatccgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko05166 ko05203 map04110 map04111 map04113 map04114 map04120 map05166 map05203

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

339

Amino Acids

37.12

Weight (kDa)

5.6

Isoelectric Point (pI)

47.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33260 AT4G33260 AT4G33270 AT5G26900 AT5G27080 AT5G27570
fragaria_vesca	FvH4_6g21090 FvH4_7g33570
malus_domestica	MD01G1233500.v1.1 MD04G1021900.v1.1 MD07G1305600.v1.1
prunus_persica	Prupe.1G099100_v2.0.a1 Prupe.1G099100_v2.0.a1 Prupe.1G099100_v2.0.a1 Prupe.2G129000_v2.0.a1 Prupe.2G129000_v2.0.a1 Prupe.2G323700_v2.0.a1 Prupe.7G086200_v2.0.a1 Prupe.7G089100_v2.0.a1
pyrus_communis	pycom01g24180 pycom04g01810 pycom07g27890
rosa_chinensis	RchiOBHm_Chr1g0383831 RchiOBHm_Chr3g0477471
rosa_laevigata	RLG00000023716 RLG00000026093
rosa_multiflora	Rmu_co8406979.1_g000001 Rmu_sc0033596.1_g000001 Rmu_ssc0000341.1_g000010
rosa_roxburghii	Rroxscaffold_4G00277200 Rroxscaffold_6G00403920 Rroxscaffold_6G00404600
rosa_rugosa	Rorug01G0442500 Rorug03G0161400
rosa_samantha	Rh1AG468300 Rh1BG426000 Rh1CG438700 Rh1DG458800 Rh3AG211400 Rh3BG244900 Rh3CG238800 Rh3DG238200
rosa_wichuraiana	Rw1G040410 Rw3G019160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	714
AccII	CGCG	1 cut(s)	328
AccIII	TCCGGA	1 cut(s)	883
AclWI	GGATC	1 cut(s)	408
AcyI	GRCGYC	1 cut(s)	232
AfaI	GTAC	3 cut(s)	108, 267, 815
AfiI	CCNNNNNNNGG	5 cut(s)	36, 438, 612, 823, 958
AgsI	TTSAA	2 cut(s)	581, 706
AhdI	GACNNNNNGTC	1 cut(s)	721
AjnI	CCWGG	1 cut(s)	857
AleI	CACNNNNGTG	1 cut(s)	693
AluBI	AGCT	8 cut(s)	271, 298, 593, 774, 799, 911, 971, 980
AluI	AGCT	8 cut(s)	271, 298, 593, 774, 799, 911, 971, 980
Alw26I	GTCTC	3 cut(s)	170, 422, 729
AlwI	GGATC	1 cut(s)	408
AlwNI	CAGNNNCTG	1 cut(s)	596
Aor13HI	TCCGGA	1 cut(s)	883
ApeKI	GCWGC	4 cut(s)	295, 484, 593, 908
AspS9I	GGNCC	1 cut(s)	197
AsuHPI	GGTGA	2 cut(s)	671, 926
AsuNHI	GCTAGC	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	197
AxyI	CCTNAGG	2 cut(s)	478, 954
BanII	GRGCYC	1 cut(s)	223
BbvCI	CCTCAGC	1 cut(s)	299
BbvI	GCAGC	4 cut(s)	307, 496, 580, 920
BccI	CCATC	3 cut(s)	221, 826, 881
BceAI	ACGGC	2 cut(s)	227, 397
BciT130I	CCWGG	1 cut(s)	859
BcoDI	GTCTC	3 cut(s)	170, 422, 729
BfaI	CTAG	1 cut(s)	150
BfmI	CTRYAG	1 cut(s)	433
BisI	GCNGC	4 cut(s)	296, 485, 594, 909
BlpI	GCTNAGC	1 cut(s)	770
BlsI	GCNGC	4 cut(s)	297, 486, 595, 910
Bme1390I	CCNGG	1 cut(s)	859
Bme18I	GGWCC	1 cut(s)	197
BmeRI	GACNNNNNGTC	1 cut(s)	721
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	1 cut(s)	859
BmrI	ACTGGG	1 cut(s)	729
BmsI	GCATC	4 cut(s)	37, 136, 551, 911
BmtI	GCTAGC	1 cut(s)	153
BmuI	ACTGGG	1 cut(s)	729
BpmI	CTGGAG	1 cut(s)	390
Bpu10I	CCTNAGC	1 cut(s)	299
Bpu1102I	GCTNAGC	1 cut(s)	770
BsaHI	GRCGYC	1 cut(s)	232
BsaI	GGTCTC	2 cut(s)	422, 729
BsaJI	CCNNGG	2 cut(s)	822, 858
BsaWI	WCCGGW	2 cut(s)	644, 883
Bsc4I	CCNNNNNNNGG	5 cut(s)	36, 438, 612, 823, 958
Bse1I	ACTGG	5 cut(s)	160, 199, 207, 373, 724
Bse21I	CCTNAGG	2 cut(s)	478, 954
Bse3DI	GCAATG	1 cut(s)	237
BseAI	TCCGGA	1 cut(s)	883
BseBI	CCWGG	1 cut(s)	859
BseDI	CCNNGG	2 cut(s)	822, 858
BseGI	GGATG	4 cut(s)	52, 151, 818, 892
BseLI	CCNNNNNNNGG	5 cut(s)	36, 438, 612, 823, 958
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	8 cut(s)	45, 290, 492, 723, 740, 890, 917, 945
BseNI	ACTGG	5 cut(s)	160, 199, 207, 373, 724
BseXI	GCAGC	4 cut(s)	307, 496, 580, 920
BsgI	GTGCAG	1 cut(s)	44
Bsh1236I	CGCG	1 cut(s)	328
BsiSI	CCGG	2 cut(s)	645, 884
BslFI	GGGAC	3 cut(s)	290, 542, 935
BslI	CCNNNNNNNGG	5 cut(s)	36, 438, 612, 823, 958
BsmAI	GTCTC	3 cut(s)	170, 422, 729
BsmFI	GGGAC	3 cut(s)	290, 542, 935
Bso31I	GGTCTC	2 cut(s)	422, 729
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp13I	TCCGGA	1 cut(s)	883
Bsp143I	GATC	4 cut(s)	413, 533, 583, 661
Bsp1720I	GCTNAGC	1 cut(s)	770
Bsp19I	CCATGG	1 cut(s)	822
Bsp68I	TCGCGA	1 cut(s)	328
BspCNI	CTCAG	8 cut(s)	44, 291, 491, 722, 739, 889, 918, 946
BspEI	TCCGGA	1 cut(s)	883
BspFNI	CGCG	1 cut(s)	328
BspLI	GGNNCC	1 cut(s)	222
BspOI	GCTAGC	1 cut(s)	153
BspPI	GGATC	1 cut(s)	408
BspTNI	GGTCTC	2 cut(s)	422, 729
BsrDI	GCAATG	1 cut(s)	237
BsrI	ACTGG	5 cut(s)	160, 199, 207, 373, 724
BssECI	CCNNGG	2 cut(s)	822, 858
BssMI	GATC	4 cut(s)	413, 533, 583, 661
BssNI	GRCGYC	1 cut(s)	232
BssT1I	CCWWGG	1 cut(s)	822
Bst2UI	CCWGG	1 cut(s)	859
Bst4CI	ACNGT	5 cut(s)	133, 552, 564, 898, 1010
BstACI	GRCGYC	1 cut(s)	232
BstC8I	GCNNGC	3 cut(s)	151, 639, 700
BstDSI	CCRYGG	1 cut(s)	822
BstENI	CCTNNNNNAGG	1 cut(s)	34
BstF5I	GGATG	4 cut(s)	52, 151, 818, 892
BstFNI	CGCG	1 cut(s)	328
BstKTI	GATC	4 cut(s)	416, 536, 586, 664
BstMAI	GTCTC	3 cut(s)	170, 422, 729
BstMBI	GATC	4 cut(s)	413, 533, 583, 661
BstMWI	GCNNNNNNNGC	5 cut(s)	574, 602, 908, 968, 977
BstNI	CCWGG	1 cut(s)	859
BstNSI	RCATGY	1 cut(s)	702
BstSCI	CCNGG	1 cut(s)	857
BstSFI	CTRYAG	1 cut(s)	433
BstUI	CGCG	1 cut(s)	328
BstV1I	GCAGC	4 cut(s)	307, 496, 580, 920
BstX2I	RGATCY	1 cut(s)	413
BstYI	RGATCY	1 cut(s)	413
Bsu36I	CCTNAGG	2 cut(s)	478, 954
BtgI	CCRYGG	1 cut(s)	822
BtsCI	GGATG	4 cut(s)	52, 151, 818, 892
BtsIMutI	CAGTG	4 cut(s)	153, 214, 569, 717
BtuMI	TCGCGA	1 cut(s)	328
Cac8I	GCNNGC	3 cut(s)	151, 639, 700
CaiI	CAGNNNCTG	1 cut(s)	596
Cfr13I	GGNCC	1 cut(s)	197
CseI	GACGC	1 cut(s)	240
Csp6I	GTAC	3 cut(s)	107, 266, 814
CviAII	CATG	4 cut(s)	345, 443, 699, 823
CviQI	GTAC	3 cut(s)	107, 266, 814
DpnI	GATC	4 cut(s)	415, 535, 585, 663
DpnII	GATC	4 cut(s)	413, 533, 583, 661
DriI	GACNNNNNGTC	1 cut(s)	721
Eam1105I	GACNNNNNGTC	1 cut(s)	721
Eco130I	CCWWGG	1 cut(s)	822
Eco24I	GRGCYC	1 cut(s)	223
Eco31I	GGTCTC	2 cut(s)	422, 729
Eco47I	GGWCC	1 cut(s)	197
Eco81I	CCTNAGG	2 cut(s)	478, 954
EcoNI	CCTNNNNNAGG	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	857
EcoT14I	CCWWGG	1 cut(s)	822
EcoT38I	GRGCYC	1 cut(s)	223
ErhI	CCWWGG	1 cut(s)	822
FaeI	CATG	4 cut(s)	348, 446, 702, 826
FaqI	GGGAC	3 cut(s)	290, 542, 935
FatI	CATG	4 cut(s)	344, 442, 698, 822
FauNDI	CATATG	1 cut(s)	1002
FblI	GTMKAC	1 cut(s)	714
Fnu4HI	GCNGC	4 cut(s)	296, 485, 594, 909
FokI	GGATG	4 cut(s)	59, 158, 805, 899
FriOI	GRGCYC	1 cut(s)	223
Fsp4HI	GCNGC	4 cut(s)	296, 485, 594, 909
FspBI	CTAG	1 cut(s)	150
GluI	GCNGC	4 cut(s)	296, 485, 594, 909
GsuI	CTGGAG	1 cut(s)	390
HapII	CCGG	2 cut(s)	645, 884
HgaI	GACGC	1 cut(s)	240
Hin1I	GRCGYC	1 cut(s)	232
Hin1II	CATG	4 cut(s)	348, 446, 702, 826
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HinfI	GANTC	4 cut(s)	278, 802, 880, 930
HpaII	CCGG	2 cut(s)	645, 884
HphI	GGTGA	2 cut(s)	671, 926
Hpy166II	GTNNAC	5 cut(s)	136, 394, 461, 715, 786
Hpy188I	TCNGA	6 cut(s)	34, 169, 262, 879, 988, 1016
Hpy188III	TCNNGA	7 cut(s)	53, 224, 327, 625, 679, 884, 934
Hpy8I	GTNNAC	5 cut(s)	136, 394, 461, 715, 786
HpyCH4III	ACNGT	5 cut(s)	133, 552, 564, 898, 1010
HpyCH4V	TGCA	6 cut(s)	25, 520, 542, 669, 698, 894
HpyF10VI	GCNNNNNNNGC	5 cut(s)	574, 602, 908, 968, 977
Hsp92I	GRCGYC	1 cut(s)	232
Hsp92II	CATG	4 cut(s)	348, 446, 702, 826
Kpn2I	TCCGGA	1 cut(s)	883
Kzo9I	GATC	4 cut(s)	413, 533, 583, 661
LmnI	GCTCC	3 cut(s)	55, 226, 976
Lsp1109I	GCAGC	4 cut(s)	307, 496, 580, 920
LweI	GCATC	4 cut(s)	37, 136, 551, 911
MaeI	CTAG	1 cut(s)	150
MaeIII	GTNAC	2 cut(s)	202, 848
MalI	GATC	4 cut(s)	415, 535, 585, 663
MboI	GATC	4 cut(s)	413, 533, 583, 661
MboII	GAAGA	2 cut(s)	537, 593
MfeI	CAATTG	2 cut(s)	114, 488
MflI	RGATCY	1 cut(s)	413
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	4 cut(s)	114, 170, 256, 488
MlyI	GAGTC	3 cut(s)	272, 796, 889
MmeI	TCCRAC	2 cut(s)	66, 226
MroI	TCCGGA	1 cut(s)	883
MseI	TTAA	4 cut(s)	252, 465, 600, 828
MslI	CAYNNNNRTG	2 cut(s)	343, 693
MspA1I	CMGCKG	5 cut(s)	271, 298, 593, 799, 911
MspI	CCGG	2 cut(s)	645, 884
MspR9I	CCNGG	1 cut(s)	859
MunI	CAATTG	2 cut(s)	114, 488
MvaI	CCWGG	1 cut(s)	859
MvnI	CGCG	1 cut(s)	328
MwoI	GCNNNNNNNGC	5 cut(s)	574, 602, 908, 968, 977
NcoI	CCATGG	1 cut(s)	822
NdeI	CATATG	1 cut(s)	1002
NdeII	GATC	4 cut(s)	413, 533, 583, 661
NheI	GCTAGC	1 cut(s)	149
NlaIII	CATG	4 cut(s)	348, 446, 702, 826
NlaIV	GGNNCC	1 cut(s)	222
NmuCI	GTSAC	1 cut(s)	848
NruI	TCGCGA	1 cut(s)	328
NspI	RCATGY	1 cut(s)	702
OliI	CACNNNNGTG	1 cut(s)	693
PaeI	GCATGC	1 cut(s)	702
PfeI	GAWTC	1 cut(s)	930
PflFI	GACNNNGTC	1 cut(s)	59
PkrI	GCNGC	4 cut(s)	297, 486, 595, 910
PleI	GAGTC	3 cut(s)	272, 796, 888
PpsI	GAGTC	3 cut(s)	272, 796, 888
Psp6I	CCWGG	1 cut(s)	857
PspGI	CCWGG	1 cut(s)	857
PspN4I	GGNNCC	1 cut(s)	222
PspPI	GGNCC	1 cut(s)	197
PstNI	CAGNNNCTG	1 cut(s)	596
PsuI	RGATCY	1 cut(s)	413
PsyI	GACNNNGTC	1 cut(s)	59
PvuII	CAGCTG	5 cut(s)	271, 298, 593, 799, 911
RruI	TCGCGA	1 cut(s)	328
RsaI	GTAC	3 cut(s)	108, 267, 815
RsaNI	GTAC	3 cut(s)	107, 266, 814
RseI	CAYNNNNRTG	2 cut(s)	343, 693
SaqAI	TTAA	4 cut(s)	252, 465, 600, 828
SatI	GCNGC	4 cut(s)	296, 485, 594, 909
Sau3AI	GATC	4 cut(s)	413, 533, 583, 661
Sau96I	GGNCC	1 cut(s)	197
SchI	GAGTC	3 cut(s)	272, 796, 889
ScrFI	CCNGG	1 cut(s)	859
SduI	GDGCHC	1 cut(s)	223
SfaNI	GCATC	4 cut(s)	37, 136, 551, 911
SfcI	CTRYAG	1 cut(s)	433
SinI	GGWCC	1 cut(s)	197
SmiMI	CAYNNNNRTG	2 cut(s)	343, 693
SphI	GCATGC	1 cut(s)	702
Sse9I	AATT	4 cut(s)	114, 170, 256, 488
SspMI	CTAG	1 cut(s)	150
StyD4I	CCNGG	1 cut(s)	857
StyI	CCWWGG	1 cut(s)	822
TaaI	ACNGT	5 cut(s)	133, 552, 564, 898, 1010
TaqI	TCGA	1 cut(s)	63
TasI	AATT	4 cut(s)	114, 170, 256, 488
TatI	WGTACW	2 cut(s)	106, 265
TfiI	GAWTC	1 cut(s)	930
Tru1I	TTAA	4 cut(s)	252, 465, 600, 828
Tru9I	TTAA	4 cut(s)	252, 465, 600, 828
TscAI	CASTG	4 cut(s)	160, 214, 569, 724
TseFI	GTSAC	1 cut(s)	848
TseI	GCWGC	4 cut(s)	295, 484, 593, 908
Tsp45I	GTSAC	1 cut(s)	848
TspDTI	ATGAA	4 cut(s)	204, 771, 933, 1019
TspRI	CASTG	4 cut(s)	160, 214, 569, 724
Tth111I	GACNNNGTC	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	197
XagI	CCTNNNNNAGG	1 cut(s)	34
XceI	RCATGY	1 cut(s)	702
XcmI	CCANNNNNNNNNTGG	2 cut(s)	242, 829
XmiI	GTMKAC	1 cut(s)	714
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.