Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002111

Physical Location & Seq

Genomic Coordinates Reverse (-)

12267611 .. 12269411

Gene Structure 1801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G089100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGGCTGCAAGCCCTACATATCAGATGCTAGTATGCTACTGACTGAGACCTTCAACATGAACCGAGCACGGATCTTCACATTCAAGAACAAACCGCCAACCCCAGTTGAAGCCATTCCAAGGAGATTTCTTTCACCCCCTCTTCATAAGGCCAAATCTACCAAGCCCTGTCGAAGGATTCCTAAGGATCCAGAGAGAACATTGGACGCTCCCGGTATTGTAGATAATTTCTACTTGAATTTACTAGACTGGAGCAGCAGCAACATTATTGCAATTGCTCTTGGAAACTCAGTGTACCTACGGAATCCTTCTGACCGTTCCATCGTAGAACTCGTCACAATTGATGACGAAGATGGTCCCATTACAAGCACCAGCTGGGCTCTTGATGGGCAGCGTATTGCCATTGGCTTGAACAATTCCTGGGTCCAGTTATGGGATTCTGTTAGATTGAAAGGAACATTGAGAGGTGGTCACCATGGAAGAGTAGGAGGAATGGATGGTAGAATTATCAACAATGATGTAAGAGTGAGATCCCACATTGTTGGAACCTACAAGGGTCACGGGGCCGAGGACGTCTGTGGATTAAAATGGTCACCCTCAGACCAGCATTTAGCTAGTGGAGGAAACGATCATGTTCTCTTCATATGGGACAGGTTAACAGCCTCCTCCACTTCACCAAGAGAGTGGCTTCAAAGGCTTGAAGACCACACTGCAGCAGTCAAGTCCATTTCAAGAGAATTTGTTGGCCTCTGGTGTGTGGTTTTTTGTGGAACAATTATGAGCGTGAATTGCTTAGTTGTCATGGTTTTAGCAAGAATGAGCTTATCCTTTGGAAGTACCGTCAATGGTGAGGACGACAGAGCTCACTGGCCATACCTCCAGAGTTCTCTTCATGCTCAGACCCCAGATGGATGCACTGTGGCCACTGCAGCCGCGGATGAGACGGTTCAAGCTTGGAATGTGTTTGGGATTCCGGGAGTTTCAGAACCCGTACGAAAAGAAAATCTGCTGCCATCTGCTCATTCATACTCCATTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko05166 ko05203 map04110 map04111 map04113 map04114 map04120 map05166 map05203

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

347

Amino Acids

38.22

Weight (kDa)

7.68

Isoelectric Point (pI)

37.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33260 AT4G33260 AT4G33270 AT5G26900 AT5G27080 AT5G27570
fragaria_vesca	FvH4_6g21090 FvH4_7g33570
malus_domestica	MD01G1233500.v1.1 MD04G1021900.v1.1 MD07G1305600.v1.1
prunus_persica	Prupe.1G099100_v2.0.a1 Prupe.1G099100_v2.0.a1 Prupe.1G099100_v2.0.a1 Prupe.2G129000_v2.0.a1 Prupe.2G129000_v2.0.a1 Prupe.2G323700_v2.0.a1 Prupe.7G086200_v2.0.a1 Prupe.7G089100_v2.0.a1
pyrus_communis	pycom01g24180 pycom04g01810 pycom07g27890
rosa_chinensis	RchiOBHm_Chr1g0383831 RchiOBHm_Chr3g0477471
rosa_laevigata	RLG00000023716 RLG00000026093
rosa_multiflora	Rmu_co8406979.1_g000001 Rmu_sc0033596.1_g000001 Rmu_ssc0000341.1_g000010
rosa_roxburghii	Rroxscaffold_4G00277200 Rroxscaffold_6G00403920 Rroxscaffold_6G00404600
rosa_rugosa	Rorug01G0442500 Rorug03G0161400
rosa_samantha	Rh1AG468300 Rh1BG426000 Rh1CG438700 Rh1DG458800 Rh3AG211400 Rh3BG244900 Rh3CG238800 Rh3DG238200
rosa_wichuraiana	Rw1G040410 Rw3G019160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	576
AccII	CGCG	1 cut(s)	935
AciI	CCGC	3 cut(s)	95, 933, 935
AclWI	GGATC	4 cut(s)	80, 182, 195, 525
AcoI	YGGCCR	2 cut(s)	869, 921
AcsI	RAATTY	2 cut(s)	238, 737
AcyI	GRCGYC	1 cut(s)	573
AfaI	GTAC	3 cut(s)	296, 838, 993
AfiI	CCNNNNNNNGG	3 cut(s)	120, 174, 433
AjnI	CCWGG	1 cut(s)	419
AluBI	AGCT	5 cut(s)	375, 614, 822, 863, 953
AluI	AGCT	5 cut(s)	375, 614, 822, 863, 953
Alw21I	GWGCWC	2 cut(s)	70, 865
Alw26I	GTCTC	2 cut(s)	41, 935
AlwI	GGATC	4 cut(s)	80, 182, 195, 525
AoxI	GGCC	5 cut(s)	150, 564, 745, 869, 921
ApeKI	GCWGC	7 cut(s)	6, 255, 258, 391, 713, 929, 1009
ApoI	RAATTY	2 cut(s)	238, 737
Asp700I	GAANNNNTTC	1 cut(s)	114
AspS9I	GGNCC	3 cut(s)	356, 424, 564
AsuC2I	CCSGG	2 cut(s)	213, 975
AsuHPI	GGTGA	5 cut(s)	126, 464, 585, 666, 860
AvaII	GGWCC	2 cut(s)	356, 424
AxyI	CCTNAGG	1 cut(s)	183
BalI	TGGCCA	2 cut(s)	871, 923
BamHI	GGATCC	1 cut(s)	187
BanII	GRGCYC	2 cut(s)	382, 865
BbsI	GAAGAC	1 cut(s)	708
Bbv12I	GWGCWC	2 cut(s)	70, 865
BbvI	GCAGC	6 cut(s)	267, 270, 403, 725, 941, 996
BccI	CCATC	6 cut(s)	329, 347, 380, 491, 902, 1021
BciT130I	CCWGG	1 cut(s)	421
BcnI	CCSGG	2 cut(s)	213, 975
BcoDI	GTCTC	2 cut(s)	41, 935
BfaI	CTAG	3 cut(s)	30, 245, 615
BfmI	CTRYAG	2 cut(s)	711, 927
BisI	GCNGC	8 cut(s)	7, 256, 259, 392, 714, 930, 933, 1010
BlsI	GCNGC	8 cut(s)	8, 257, 260, 393, 715, 931, 934, 1011
Bme1390I	CCNGG	3 cut(s)	213, 421, 975
Bme18I	GGWCC	2 cut(s)	356, 424
BmgT120I	GGNCC	3 cut(s)	356, 424, 564
BmiI	GGNNCC	5 cut(s)	189, 358, 425, 547, 565
BmrFI	CCNGG	3 cut(s)	213, 421, 975
BmrI	ACTGGG	1 cut(s)	98
BmsI	GCATC	2 cut(s)	16, 902
BmuI	ACTGGG	1 cut(s)	98
BpiI	GAAGAC	1 cut(s)	708
BpmI	CTGGAG	2 cut(s)	271, 863
BpuMI	CCSGG	2 cut(s)	213, 975
BsaHI	GRCGYC	1 cut(s)	573
BsaI	GGTCTC	1 cut(s)	41
BsaJI	CCNNGG	5 cut(s)	119, 420, 475, 567, 933
Bsc4I	CCNNNNNNNGG	3 cut(s)	120, 174, 433
Bse1I	ACTGG	4 cut(s)	104, 254, 427, 872
Bse21I	CCTNAGG	1 cut(s)	183
BseBI	CCWGG	1 cut(s)	421
BseDI	CCNNGG	5 cut(s)	119, 420, 475, 567, 933
BseGI	GGATG	3 cut(s)	502, 917, 943
BseLI	CCNNNNNNNGG	3 cut(s)	120, 174, 433
BseMII	CTCAG	4 cut(s)	36, 303, 612, 911
BseNI	ACTGG	4 cut(s)	104, 254, 427, 872
BseRI	GAGGAG	1 cut(s)	655
BseXI	GCAGC	6 cut(s)	267, 270, 403, 725, 941, 996
BseYI	CCCAGC	1 cut(s)	375
Bsh1236I	CGCG	1 cut(s)	935
BshFI	GGCC	5 cut(s)	152, 566, 747, 871, 923
BsiHKAI	GWGCWC	2 cut(s)	70, 865
BsiSI	CCGG	2 cut(s)	213, 974
BsiWI	CGTACG	1 cut(s)	991
BslFI	GGGAC	2 cut(s)	342, 662
BslI	CCNNNNNNNGG	3 cut(s)	120, 174, 433
BsmAI	GTCTC	2 cut(s)	41, 935
BsmBI	CGTCTC	1 cut(s)	935
BsmFI	GGGAC	2 cut(s)	342, 662
BsnI	GGCC	5 cut(s)	152, 566, 747, 871, 923
Bso31I	GGTCTC	1 cut(s)	41
Bsp1286I	GDGCHC	3 cut(s)	70, 382, 865
Bsp143I	GATC	4 cut(s)	72, 187, 530, 628
Bsp19I	CCATGG	1 cut(s)	475
BspACI	CCGC	3 cut(s)	95, 933, 935
BspANI	GGCC	5 cut(s)	152, 566, 747, 871, 923
BspCNI	CTCAG	4 cut(s)	37, 302, 611, 910
BspFNI	CGCG	1 cut(s)	935
BspLI	GGNNCC	5 cut(s)	189, 358, 425, 547, 565
BspMAI	CTGCAG	2 cut(s)	715, 931
BspPI	GGATC	4 cut(s)	80, 182, 195, 525
BspTNI	GGTCTC	1 cut(s)	41
BsrI	ACTGG	4 cut(s)	104, 254, 427, 872
BssECI	CCNNGG	5 cut(s)	119, 420, 475, 567, 933
BssMI	GATC	4 cut(s)	72, 187, 530, 628
BssNI	GRCGYC	1 cut(s)	573
BssT1I	CCWWGG	2 cut(s)	119, 475
Bst2UI	CCWGG	1 cut(s)	421
Bst4CI	ACNGT	4 cut(s)	317, 841, 919, 946
Bst6I	CTCTTC	4 cut(s)	147, 475, 644, 894
BstACI	GRCGYC	1 cut(s)	573
BstC8I	GCNNGC	1 cut(s)	11
BstDEI	CTNAG	6 cut(s)	45, 183, 289, 598, 793, 897
BstDSI	CCRYGG	2 cut(s)	475, 933
BstEII	GGTNACC	2 cut(s)	470, 591
BstENI	CCTNNNNNAGG	1 cut(s)	172
BstF5I	GGATG	3 cut(s)	502, 917, 943
BstFNI	CGCG	1 cut(s)	935
BstKTI	GATC	4 cut(s)	75, 190, 533, 631
BstMAI	GTCTC	2 cut(s)	41, 935
BstMBI	GATC	4 cut(s)	72, 187, 530, 628
BstMWI	GCNNNNNNNGC	3 cut(s)	694, 789, 929
BstNI	CCWGG	1 cut(s)	421
BstPI	GGTNACC	2 cut(s)	470, 591
BstSCI	CCNGG	3 cut(s)	211, 419, 973
BstSFI	CTRYAG	2 cut(s)	711, 927
BstUI	CGCG	1 cut(s)	935
BstV1I	GCAGC	6 cut(s)	267, 270, 403, 725, 941, 996
BstV2I	GAAGAC	1 cut(s)	708
BstX2I	RGATCY	3 cut(s)	72, 187, 530
BstXI	CCANNNNNNTGG	2 cut(s)	542, 684
BstYI	RGATCY	3 cut(s)	72, 187, 530
Bsu36I	CCTNAGG	1 cut(s)	183
BsuRI	GGCC	5 cut(s)	152, 566, 747, 871, 923
BtgI	CCRYGG	2 cut(s)	475, 933
BtsCI	GGATG	3 cut(s)	502, 917, 943
BtsI	GCAGTG	2 cut(s)	708, 924
BtsIMutI	CAGTG	5 cut(s)	297, 708, 865, 915, 924
Cac8I	GCNNGC	1 cut(s)	11
Cfr13I	GGNCC	3 cut(s)	356, 424, 564
Cfr42I	CCGCGG	1 cut(s)	936
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	3 cut(s)	295, 837, 992
CviAII	CATG	5 cut(s)	58, 476, 632, 802, 893
CviQI	GTAC	3 cut(s)	295, 837, 992
DdeI	CTNAG	6 cut(s)	45, 183, 289, 598, 793, 897
DpnI	GATC	4 cut(s)	74, 189, 532, 630
DpnII	GATC	4 cut(s)	72, 187, 530, 628
EaeI	YGGCCR	2 cut(s)	869, 921
Eam1104I	CTCTTC	4 cut(s)	147, 475, 644, 894
EarI	CTCTTC	4 cut(s)	147, 475, 644, 894
Ecl136II	GAGCTC	1 cut(s)	863
Eco130I	CCWWGG	2 cut(s)	119, 475
Eco24I	GRGCYC	2 cut(s)	382, 865
Eco31I	GGTCTC	1 cut(s)	41
Eco47I	GGWCC	2 cut(s)	356, 424
Eco53kI	GAGCTC	1 cut(s)	863
Eco81I	CCTNAGG	1 cut(s)	183
Eco91I	GGTNACC	2 cut(s)	470, 591
EcoICRI	GAGCTC	1 cut(s)	863
EcoNI	CCTNNNNNAGG	1 cut(s)	172
EcoO65I	GGTNACC	2 cut(s)	470, 591
EcoRII	CCWGG	1 cut(s)	419
EcoT14I	CCWWGG	2 cut(s)	119, 475
EcoT38I	GRGCYC	2 cut(s)	382, 865
ErhI	CCWWGG	2 cut(s)	119, 475
Esp3I	CGTCTC	1 cut(s)	935
FaeI	CATG	5 cut(s)	61, 479, 635, 805, 896
FaqI	GGGAC	2 cut(s)	342, 662
FatI	CATG	5 cut(s)	57, 475, 631, 801, 892
FauNDI	CATATG	1 cut(s)	644
Fnu4HI	GCNGC	8 cut(s)	7, 256, 259, 392, 714, 930, 933, 1010
FokI	GGATG	3 cut(s)	509, 924, 950
FriOI	GRGCYC	2 cut(s)	382, 865
Fsp4HI	GCNGC	8 cut(s)	7, 256, 259, 392, 714, 930, 933, 1010
FspBI	CTAG	3 cut(s)	30, 245, 615
GluI	GCNGC	8 cut(s)	7, 256, 259, 392, 714, 930, 933, 1010
GsaI	CCCAGC	1 cut(s)	379
GsuI	CTGGAG	2 cut(s)	271, 863
HaeIII	GGCC	5 cut(s)	152, 566, 747, 871, 923
HapII	CCGG	2 cut(s)	213, 974
HgaI	GACGC	1 cut(s)	215
Hin1I	GRCGYC	1 cut(s)	573
Hin1II	CATG	5 cut(s)	61, 479, 635, 805, 896
HincII	GTYRAC	1 cut(s)	657
HindII	GTYRAC	1 cut(s)	657
HindIII	AAGCTT	1 cut(s)	951
HinfI	GANTC	4 cut(s)	178, 304, 437, 970
HpaI	GTTAAC	1 cut(s)	657
HpaII	CCGG	2 cut(s)	213, 974
HphI	GGTGA	5 cut(s)	126, 464, 585, 666, 860
Hpy166II	GTNNAC	2 cut(s)	295, 657
Hpy188I	TCNGA	5 cut(s)	25, 313, 601, 900, 985
Hpy188III	TCNNGA	5 cut(s)	85, 191, 383, 732, 880
Hpy8I	GTNNAC	2 cut(s)	295, 657
HpyAV	CCTTC	3 cut(s)	61, 168, 318
HpyCH4III	ACNGT	4 cut(s)	317, 841, 919, 946
HpyCH4IV	ACGT	1 cut(s)	573
HpyCH4V	TGCA	5 cut(s)	9, 272, 713, 915, 929
HpyF10VI	GCNNNNNNNGC	3 cut(s)	694, 789, 929
HpyF3I	CTNAG	6 cut(s)	45, 183, 289, 598, 793, 897
HpySE526I	ACGT	1 cut(s)	573
Hsp92I	GRCGYC	1 cut(s)	573
Hsp92II	CATG	5 cut(s)	61, 479, 635, 805, 896
KspAI	GTTAAC	1 cut(s)	657
KspI	CCGCGG	1 cut(s)	936
Kzo9I	GATC	4 cut(s)	72, 187, 530, 628
LmnI	GCTCC	2 cut(s)	214, 252
Lsp1109I	GCAGC	6 cut(s)	267, 270, 403, 725, 941, 996
LweI	GCATC	2 cut(s)	16, 902
MaeI	CTAG	3 cut(s)	30, 245, 615
MaeII	ACGT	1 cut(s)	573
MaeIII	GTNAC	4 cut(s)	334, 470, 557, 591
MalI	GATC	4 cut(s)	74, 189, 532, 630
MboI	GATC	4 cut(s)	72, 187, 530, 628
MboII	GAAGA	7 cut(s)	67, 134, 362, 492, 631, 713, 881
MfeI	CAATTG	2 cut(s)	273, 339
MflI	RGATCY	3 cut(s)	72, 187, 530
MhlI	GDGCHC	3 cut(s)	70, 382, 865
MlsI	TGGCCA	2 cut(s)	871, 923
MluCI	AATT	9 cut(s)	226, 238, 273, 339, 415, 504, 737, 774, 787
MluNI	TGGCCA	2 cut(s)	871, 923
MmeI	TCCRAC	1 cut(s)	523
Mox20I	TGGCCA	2 cut(s)	871, 923
MroXI	GAANNNNTTC	1 cut(s)	114
MscI	TGGCCA	2 cut(s)	871, 923
MseI	TTAA	2 cut(s)	584, 656
Msp20I	TGGCCA	2 cut(s)	871, 923
MspA1I	CMGCKG	2 cut(s)	375, 935
MspI	CCGG	2 cut(s)	213, 974
MspR9I	CCNGG	3 cut(s)	213, 421, 975
MunI	CAATTG	2 cut(s)	273, 339
MvaI	CCWGG	1 cut(s)	421
MvnI	CGCG	1 cut(s)	935
MwoI	GCNNNNNNNGC	3 cut(s)	694, 789, 929
NciI	CCSGG	2 cut(s)	213, 975
NcoI	CCATGG	1 cut(s)	475
NdeI	CATATG	1 cut(s)	644
NdeII	GATC	4 cut(s)	72, 187, 530, 628
NlaIII	CATG	5 cut(s)	61, 479, 635, 805, 896
NlaIV	GGNNCC	5 cut(s)	189, 358, 425, 547, 565
NmeAIII	GCCGAG	1 cut(s)	592
NmuCI	GTSAC	4 cut(s)	334, 470, 557, 591
PcsI	WCGNNNNNNNCGW	1 cut(s)	330
PdmI	GAANNNNTTC	1 cut(s)	114
PfeI	GAWTC	4 cut(s)	178, 304, 437, 970
Pfl23II	CGTACG	1 cut(s)	991
PfoI	TCCNGGA	1 cut(s)	973
PkrI	GCNGC	8 cut(s)	8, 257, 260, 393, 715, 931, 934, 1011
Psp124BI	GAGCTC	1 cut(s)	865
Psp6I	CCWGG	1 cut(s)	419
PspEI	GGTNACC	2 cut(s)	470, 591
PspFI	CCCAGC	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	419
PspLI	CGTACG	1 cut(s)	991
PspN4I	GGNNCC	5 cut(s)	189, 358, 425, 547, 565
PspPI	GGNCC	3 cut(s)	356, 424, 564
PstI	CTGCAG	2 cut(s)	715, 931
PsuI	RGATCY	3 cut(s)	72, 187, 530
PvuII	CAGCTG	1 cut(s)	375
RsaI	GTAC	3 cut(s)	296, 838, 993
RsaNI	GTAC	3 cut(s)	295, 837, 992
SacI	GAGCTC	1 cut(s)	865
SacII	CCGCGG	1 cut(s)	936
SaqAI	TTAA	2 cut(s)	584, 656
SatI	GCNGC	8 cut(s)	7, 256, 259, 392, 714, 930, 933, 1010
Sau3AI	GATC	4 cut(s)	72, 187, 530, 628
Sau96I	GGNCC	3 cut(s)	356, 424, 564
ScrFI	CCNGG	3 cut(s)	213, 421, 975
SduI	GDGCHC	3 cut(s)	70, 382, 865
SfaNI	GCATC	2 cut(s)	16, 902
SfcI	CTRYAG	2 cut(s)	711, 927
Sfr303I	CCGCGG	1 cut(s)	936
SgrBI	CCGCGG	1 cut(s)	936
SinI	GGWCC	2 cut(s)	356, 424
Sse9I	AATT	9 cut(s)	226, 238, 273, 339, 415, 504, 737, 774, 787
SsiI	CCGC	3 cut(s)	95, 933, 935
SspMI	CTAG	3 cut(s)	30, 245, 615
SstI	GAGCTC	1 cut(s)	865
StyD4I	CCNGG	3 cut(s)	211, 419, 973
StyI	CCWWGG	2 cut(s)	119, 475
TaaI	ACNGT	4 cut(s)	317, 841, 919, 946
TaiI	ACGT	1 cut(s)	576
TaqI	TCGA	1 cut(s)	172
TasI	AATT	9 cut(s)	226, 238, 273, 339, 415, 504, 737, 774, 787
TauI	GCSGC	1 cut(s)	935
TfiI	GAWTC	4 cut(s)	178, 304, 437, 970
Tru1I	TTAA	2 cut(s)	584, 656
Tru9I	TTAA	2 cut(s)	584, 656
TscAI	CASTG	5 cut(s)	297, 715, 872, 922, 931
TseFI	GTSAC	4 cut(s)	334, 470, 557, 591
TseI	GCWGC	7 cut(s)	6, 255, 258, 391, 713, 929, 1009
Tsp45I	GTSAC	4 cut(s)	334, 470, 557, 591
TspDTI	ATGAA	5 cut(s)	74, 134, 631, 881, 1014
TspGWI	ACGGA	2 cut(s)	85, 316
TspRI	CASTG	5 cut(s)	297, 715, 872, 922, 931
VpaK11BI	GGWCC	2 cut(s)	356, 424
XagI	CCTNNNNNAGG	1 cut(s)	172
XapI	RAATTY	2 cut(s)	238, 737
XmnI	GAANNNNTTC	1 cut(s)	114
XspI	CTAG	3 cut(s)	30, 245, 615
ZraI	GACGTC	1 cut(s)	574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.