Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033596.1

Orthogroup ID

OG0002111

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1254

Gene Structure 1253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033596.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 425 bp

atggatgcaggatcaatgaattcttcatccaactacaagtctaactccagaggcccactgcaagaacagttcattcagagaaagagttctcgggaaaacttggacagattcataccaaacagatcagcaatggatatgggctatgcgcaatctatgctaactgaaagcaggaaaggtaaggaaaaccctgctatcagttctccatccagggaggcctatcagaggaaattggcagaggctttgaacatgaaccgcactcggattcttgctttcaagaacaagcctccggccccggtggatctgtaccccaaagatttcttctcttctcaaacccaagataagccagcaaagcccaggagacacattcctcaaacctcagagaggacattggatgctcctgaccttgtcgatgactactacctcaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko05166 ko05203 map04110 map04111 map04113 map04114 map04120 map05166 map05203

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

141

Amino Acids

16.13

Weight (kDa)

9.65

Isoelectric Point (pI)

58.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33260 AT4G33260 AT4G33270 AT5G26900 AT5G27080 AT5G27570
fragaria_vesca	FvH4_6g21090 FvH4_7g33570
malus_domestica	MD01G1233500.v1.1 MD04G1021900.v1.1 MD07G1305600.v1.1
prunus_persica	Prupe.1G099100_v2.0.a1 Prupe.1G099100_v2.0.a1 Prupe.1G099100_v2.0.a1 Prupe.2G129000_v2.0.a1 Prupe.2G129000_v2.0.a1 Prupe.2G323700_v2.0.a1 Prupe.7G086200_v2.0.a1 Prupe.7G089100_v2.0.a1
pyrus_communis	pycom01g24180 pycom04g01810 pycom07g27890
rosa_chinensis	RchiOBHm_Chr1g0383831 RchiOBHm_Chr3g0477471
rosa_laevigata	RLG00000023716 RLG00000026093
rosa_multiflora	Rmu_co8406979.1_g000001 Rmu_sc0033596.1_g000001 Rmu_ssc0000341.1_g000010
rosa_roxburghii	Rroxscaffold_4G00277200 Rroxscaffold_6G00403920 Rroxscaffold_6G00404600
rosa_rugosa	Rorug01G0442500 Rorug03G0161400
rosa_samantha	Rh1AG468300 Rh1BG426000 Rh1CG438700 Rh1DG458800 Rh3AG211400 Rh3BG244900 Rh3CG238800 Rh3DG238200
rosa_wichuraiana	Rw1G040410 Rw3G019160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	147
AciI	CCGC	1 cut(s)	253
AclWI	GGATC	2 cut(s)	19, 306
AcsI	RAATTY	1 cut(s)	19
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	2 cut(s)	222, 381
AgsI	TTSAA	2 cut(s)	244, 274
AjnI	CCWGG	2 cut(s)	206, 353
AjuI	GAANNNNNNNTTGG	2 cut(s)	302, 334
Alw26I	GTCTC	1 cut(s)	352
AlwI	GGATC	2 cut(s)	19, 306
Ama87I	CYCGRG	1 cut(s)	90
AoxI	GGCC	3 cut(s)	52, 213, 288
ApoI	RAATTY	1 cut(s)	19
Asp700I	GAANNNNTTC	1 cut(s)	85
AspLEI	GCGC	1 cut(s)	148
AspS9I	GGNCC	2 cut(s)	53, 289
AsuC2I	CCSGG	1 cut(s)	293
AvaI	CYCGRG	1 cut(s)	90
BccI	CCATC	1 cut(s)	211
BciT130I	CCWGG	2 cut(s)	208, 355
BcnI	CCSGG	1 cut(s)	293
BcoDI	GTCTC	1 cut(s)	352
Bme1390I	CCNGG	3 cut(s)	208, 293, 355
BmeT110I	CYCGRG	1 cut(s)	90
BmgT120I	GGNCC	2 cut(s)	53, 289
BmiI	GGNNCC	1 cut(s)	291
BmrFI	CCNGG	3 cut(s)	208, 293, 355
BmsI	GCATC	1 cut(s)	382
BpmI	CTGGAG	1 cut(s)	31
BpuMI	CCSGG	1 cut(s)	293
BsaJI	CCNNGG	3 cut(s)	207, 291, 353
Bsc4I	CCNNNNNNNGG	2 cut(s)	222, 381
Bse3DI	GCAATG	1 cut(s)	135
BseBI	CCWGG	2 cut(s)	208, 355
BseDI	CCNNGG	3 cut(s)	207, 291, 353
BseGI	GGATG	4 cut(s)	10, 26, 203, 397
BseLI	CCNNNNNNNGG	2 cut(s)	222, 381
BseMI	GCAATG	1 cut(s)	135
BseMII	CTCAG	1 cut(s)	390
BshFI	GGCC	3 cut(s)	54, 215, 290
BsiHKCI	CYCGRG	1 cut(s)	90
BsiSI	CCGG	2 cut(s)	287, 293
BslI	CCNNNNNNNGG	2 cut(s)	222, 381
BsmAI	GTCTC	1 cut(s)	352
BsnI	GGCC	3 cut(s)	54, 215, 290
BsoBI	CYCGRG	1 cut(s)	90
Bsp143I	GATC	3 cut(s)	11, 122, 298
BspACI	CCGC	1 cut(s)	253
BspANI	GGCC	3 cut(s)	54, 215, 290
BspCNI	CTCAG	1 cut(s)	389
BspLI	GGNNCC	1 cut(s)	291
BspPI	GGATC	2 cut(s)	19, 306
BsrDI	GCAATG	1 cut(s)	135
BssECI	CCNNGG	3 cut(s)	207, 291, 353
BssMI	GATC	3 cut(s)	11, 122, 298
Bst2UI	CCWGG	2 cut(s)	208, 355
Bst4CI	ACNGT	1 cut(s)	69
Bst6I	CTCTTC	1 cut(s)	328
BstAPI	GCANNNNNTGC	1 cut(s)	154
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	1 cut(s)	376
BstENI	CCTNNNNNAGG	2 cut(s)	220, 379
BstF5I	GGATG	4 cut(s)	10, 26, 203, 397
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	3 cut(s)	14, 125, 301
BstMAI	GTCTC	1 cut(s)	352
BstMBI	GATC	3 cut(s)	11, 122, 298
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 349
BstNI	CCWGG	2 cut(s)	208, 355
BstSCI	CCNGG	3 cut(s)	206, 291, 353
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
BsuRI	GGCC	3 cut(s)	54, 215, 290
BtsCI	GGATG	4 cut(s)	10, 26, 203, 397
BtsI	GCAGTG	1 cut(s)	56
BtsIMutI	CAGTG	1 cut(s)	56
Cac8I	GCNNGC	1 cut(s)	345
CfoI	GCGC	1 cut(s)	148
Cfr13I	GGNCC	2 cut(s)	53, 289
Csp6I	GTAC	1 cut(s)	304
CviAII	CATG	1 cut(s)	247
CviJI	RGCY	8 cut(s)	54, 141, 215, 239, 283, 290, 343, 352
CviKI_1	RGCY	8 cut(s)	54, 141, 215, 239, 283, 290, 343, 352
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	1 cut(s)	376
DpnI	GATC	3 cut(s)	13, 124, 300
DpnII	GATC	3 cut(s)	11, 122, 298
Eam1104I	CTCTTC	1 cut(s)	328
EarI	CTCTTC	1 cut(s)	328
Eco147I	AGGCCT	1 cut(s)	215
Eco88I	CYCGRG	1 cut(s)	90
EcoNI	CCTNNNNNAGG	2 cut(s)	220, 379
EcoRI	GAATTC	1 cut(s)	19
EcoRII	CCWGG	2 cut(s)	206, 353
FaeI	CATG	1 cut(s)	250
FaiI	YATR	5 cut(s)	113, 137, 144, 155, 248
FatI	CATG	1 cut(s)	246
FokI	GGATG	4 cut(s)	13, 17, 190, 404
FspI	TGCGCA	1 cut(s)	147
GlaI	GCGC	1 cut(s)	147
GsuI	CTGGAG	1 cut(s)	31
HaeIII	GGCC	3 cut(s)	54, 215, 290
HapII	CCGG	2 cut(s)	287, 293
HhaI	GCGC	1 cut(s)	148
Hin1II	CATG	1 cut(s)	250
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HinfI	GANTC	2 cut(s)	108, 262
HpaII	CCGG	2 cut(s)	287, 293
Hpy188I	TCNGA	4 cut(s)	78, 222, 261, 379
Hpy188III	TCNNGA	4 cut(s)	48, 92, 274, 398
HpyCH4III	ACNGT	1 cut(s)	69
HpyCH4V	TGCA	2 cut(s)	8, 61
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 349
HpyF3I	CTNAG	1 cut(s)	376
Hsp92II	CATG	1 cut(s)	250
HspAI	GCGC	1 cut(s)	146
Kzo9I	GATC	3 cut(s)	11, 122, 298
LmnI	GCTCC	1 cut(s)	400
LweI	GCATC	1 cut(s)	382
MalI	GATC	3 cut(s)	13, 124, 300
MboI	GATC	3 cut(s)	11, 122, 298
MboII	GAAGA	3 cut(s)	15, 310, 315
MflI	RGATCY	1 cut(s)	298
MluCI	AATT	2 cut(s)	19, 227
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	8 cut(s)	44, 205, 216, 229, 294, 375, 378, 385
MroXI	GAANNNNTTC	1 cut(s)	85
MspI	CCGG	2 cut(s)	287, 293
MspR9I	CCNGG	3 cut(s)	208, 293, 355
MvaI	CCWGG	2 cut(s)	208, 355
MwoI	GCNNNNNNNGC	2 cut(s)	154, 349
NciI	CCSGG	1 cut(s)	293
NdeII	GATC	3 cut(s)	11, 122, 298
NlaIII	CATG	1 cut(s)	250
NlaIV	GGNNCC	1 cut(s)	291
NsbI	TGCGCA	1 cut(s)	147
PceI	AGGCCT	1 cut(s)	215
PdmI	GAANNNNTTC	1 cut(s)	85
PfeI	GAWTC	2 cut(s)	108, 262
PflFI	GACNNNGTC	1 cut(s)	404
Psp6I	CCWGG	2 cut(s)	206, 353
PspGI	CCWGG	2 cut(s)	206, 353
PspN4I	GGNNCC	1 cut(s)	291
PspPI	GGNCC	2 cut(s)	53, 289
PsuI	RGATCY	1 cut(s)	298
PsyI	GACNNNGTC	1 cut(s)	404
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
Sau3AI	GATC	3 cut(s)	11, 122, 298
Sau96I	GGNCC	2 cut(s)	53, 289
ScrFI	CCNGG	3 cut(s)	208, 293, 355
SetI	ASST	4 cut(s)	178, 377, 405, 423
SfaNI	GCATC	1 cut(s)	382
Sse9I	AATT	2 cut(s)	19, 227
SseBI	AGGCCT	1 cut(s)	215
SsiI	CCGC	1 cut(s)	253
StuI	AGGCCT	1 cut(s)	215
StyD4I	CCNGG	3 cut(s)	206, 291, 353
TaaI	ACNGT	1 cut(s)	69
TaqI	TCGA	1 cut(s)	408
TasI	AATT	2 cut(s)	19, 227
TfiI	GAWTC	2 cut(s)	108, 262
TscAI	CASTG	1 cut(s)	63
TspDTI	ATGAA	5 cut(s)	15, 32, 61, 100, 263
TspRI	CASTG	1 cut(s)	63
Tth111I	GACNNNGTC	1 cut(s)	404
XagI	CCTNNNNNAGG	2 cut(s)	220, 379
XapI	RAATTY	1 cut(s)	19
XmnI	GAANNNNTTC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.