Rorug03G0161400

Cell division cycle

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0002111
Physical Location & Seq
Reverse (-)
13388889 .. 13390785
1897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0161400.1

Sequence Viewer

Length: 339 bp
ATGGCATCCGCATCAAACAGGGGTCAAGGTGGAATTCAACAGTTGCTTGCTGCAGAGCAAGAAGCTCAGCATATCGTCAATGCTGCTAGAAATGCTAAACTCACTAGGCTGAAACAAGCCAAAGAAGAGGCGGAAAGGGAGATCGCTGATTACCGTGCCCAAATGGAGCGTGAATTCCAGAAGAAAGTTGCAGCGAGCAGTGGAGATTCTGGGGCTAATGTGAAGCGCCTTGAAGTGGAAACTACGGAAAAGATCAATCACCTCTCGACAGAGGGCTCAAGGATATCAGGTGATGTTGTCCAGATGCTTCTGAAGCATGTGACGACAGTGAGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 ko04114 ko04120 ko05166 ko05203 map04110 map04111 map04113 map04114 map04120 map05166 map05203
Pfam Domains
Protein Families
ANAPC4_WD40 WD40

Protein Analysis

112

Amino Acids

12.33

Weight (kDa)

9.1

Isoelectric Point (pI)

31.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
V-ATPase_G PF03179 9 - 110 6.5e-34 Vacuolar (H+)-ATPase G subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 9, 131
AcsI RAATTY 2 cut(s) 33, 173
AcuI CTGAAG 1 cut(s) 332
AfiI CCNNNNNNNGG 1 cut(s) 235
AgsI TTSAA 2 cut(s) 38, 233
AluBI AGCT 1 cut(s) 65
AluI AGCT 1 cut(s) 65
ApeKI GCWGC 3 cut(s) 50, 83, 191
ApoI RAATTY 2 cut(s) 33, 173
AspLEI GCGC 1 cut(s) 228
AsuHPI GGTGA 2 cut(s) 251, 302
BaeGI GKGCMC 1 cut(s) 160
BanII GRGCYC 1 cut(s) 278
BbvI GCAGC 3 cut(s) 37, 70, 203
BfaI CTAG 2 cut(s) 87, 105
BfmI CTRYAG 1 cut(s) 51
BfoI RGCGCY 1 cut(s) 229
BisI GCNGC 3 cut(s) 51, 84, 192
BlpI GCTNAGC 1 cut(s) 66
BlsI GCNGC 3 cut(s) 52, 85, 193
BmsI GCATC 3 cut(s) 14, 20, 294
Bpu1102I GCTNAGC 1 cut(s) 66
BpuEI CTTGAG 1 cut(s) 262
Bsc4I CCNNNNNNNGG 1 cut(s) 235
BseGI GGATG 1 cut(s) 5
BseLI CCNNNNNNNGG 1 cut(s) 235
BseMII CTCAG 1 cut(s) 80
BseSI GKGCMC 1 cut(s) 160
BseXI GCAGC 3 cut(s) 37, 70, 203
BslI CCNNNNNNNGG 1 cut(s) 235
Bsp1286I GDGCHC 2 cut(s) 160, 278
Bsp143I GATC 2 cut(s) 141, 252
Bsp1720I GCTNAGC 1 cut(s) 66
BspACI CCGC 2 cut(s) 9, 131
BspCNI CTCAG 1 cut(s) 79
BspMAI CTGCAG 1 cut(s) 55
BssMI GATC 2 cut(s) 141, 252
Bst4CI ACNGT 3 cut(s) 42, 155, 328
Bst6I CTCTTC 1 cut(s) 120
BstC8I GCNNGC 2 cut(s) 48, 196
BstDEI CTNAG 1 cut(s) 66
BstF5I GGATG 1 cut(s) 5
BstH2I RGCGCY 1 cut(s) 229
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 2 cut(s) 144, 255
BstMBI GATC 2 cut(s) 141, 252
BstMWI GCNNNNNNNGC 2 cut(s) 92, 313
BstNSI RCATGY 1 cut(s) 320
BstSFI CTRYAG 1 cut(s) 51
BstSLI GKGCMC 1 cut(s) 160
BstV1I GCAGC 3 cut(s) 37, 70, 203
BtsCI GGATG 1 cut(s) 5
BtsI GCAGTG 1 cut(s) 205
BtsIMutI CAGTG 2 cut(s) 205, 333
Cac8I GCNNGC 2 cut(s) 48, 196
CfoI GCGC 1 cut(s) 228
CviAII CATG 1 cut(s) 317
CviJI RGCY 5 cut(s) 65, 109, 119, 215, 276
CviKI_1 RGCY 5 cut(s) 65, 109, 119, 215, 276
DdeI CTNAG 1 cut(s) 66
DpnI GATC 2 cut(s) 143, 254
DpnII GATC 2 cut(s) 141, 252
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
EciI GGCGGA 1 cut(s) 146
Eco24I GRGCYC 1 cut(s) 278
Eco32I GATATC 1 cut(s) 285
Eco57I CTGAAG 1 cut(s) 332
EcoRI GAATTC 2 cut(s) 33, 173
EcoRV GATATC 1 cut(s) 285
EcoT38I GRGCYC 1 cut(s) 278
FaeI CATG 1 cut(s) 320
FaiI YATR 2 cut(s) 72, 318
FatI CATG 1 cut(s) 316
Fnu4HI GCNGC 3 cut(s) 51, 84, 192
FriOI GRGCYC 1 cut(s) 278
Fsp4HI GCNGC 3 cut(s) 51, 84, 192
FspBI CTAG 2 cut(s) 87, 105
GlaI GCGC 1 cut(s) 227
GluI GCNGC 3 cut(s) 51, 84, 192
HaeII RGCGCY 1 cut(s) 229
HhaI GCGC 1 cut(s) 228
Hin1II CATG 1 cut(s) 320
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HinfI GANTC 1 cut(s) 206
HphI GGTGA 2 cut(s) 251, 302
Hpy188I TCNGA 1 cut(s) 312
Hpy188III TCNNGA 3 cut(s) 178, 265, 301
HpyCH4III ACNGT 3 cut(s) 42, 155, 328
HpyCH4V TGCA 2 cut(s) 53, 191
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 313
HpyF3I CTNAG 1 cut(s) 66
Hsp92II CATG 1 cut(s) 320
HspAI GCGC 1 cut(s) 226
Kzo9I GATC 2 cut(s) 141, 252
LmnI GCTCC 1 cut(s) 166
LpnPI CCDG 5 cut(s) 4, 191, 195, 273, 314
Lsp1109I GCAGC 3 cut(s) 37, 70, 203
LweI GCATC 3 cut(s) 14, 20, 294
MaeI CTAG 2 cut(s) 87, 105
MaeIII GTNAC 1 cut(s) 319
MalI GATC 2 cut(s) 143, 254
MboI GATC 2 cut(s) 141, 252
MboII GAAGA 2 cut(s) 137, 193
MhlI GDGCHC 2 cut(s) 160, 278
MluCI AATT 3 cut(s) 33, 173, 334
MnlI CCTC 3 cut(s) 121, 265, 272
MseI TTAA 1 cut(s) 337
MwoI GCNNNNNNNGC 2 cut(s) 92, 313
NdeII GATC 2 cut(s) 141, 252
NlaIII CATG 1 cut(s) 320
NmuCI GTSAC 1 cut(s) 319
NspI RCATGY 1 cut(s) 320
PfeI GAWTC 1 cut(s) 206
PkrI GCNGC 3 cut(s) 52, 85, 193
PstI CTGCAG 1 cut(s) 55
SaqAI TTAA 1 cut(s) 337
SatI GCNGC 3 cut(s) 51, 84, 192
Sau3AI GATC 2 cut(s) 141, 252
SduI GDGCHC 2 cut(s) 160, 278
SetI ASST 4 cut(s) 31, 67, 264, 292
SfaNI GCATC 3 cut(s) 14, 20, 294
SfcI CTRYAG 1 cut(s) 51
SmlI CTYRAG 1 cut(s) 277
SmoI CTYRAG 1 cut(s) 277
Sse9I AATT 3 cut(s) 33, 173, 334
SsiI CCGC 2 cut(s) 9, 131
SspMI CTAG 2 cut(s) 87, 105
TaaI ACNGT 3 cut(s) 42, 155, 328
TaqI TCGA 1 cut(s) 266
TasI AATT 3 cut(s) 33, 173, 334
TfiI GAWTC 1 cut(s) 206
Tru1I TTAA 1 cut(s) 337
Tru9I TTAA 1 cut(s) 337
TscAI CASTG 2 cut(s) 205, 333
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 3 cut(s) 50, 83, 191
Tsp45I GTSAC 1 cut(s) 319
TspGWI ACGGA 1 cut(s) 260
TspRI CASTG 2 cut(s) 205, 333
XapI RAATTY 2 cut(s) 33, 173
XceI RCATGY 1 cut(s) 320
XspI CTAG 2 cut(s) 87, 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.