Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002657

Physical Location & Seq

Genomic Coordinates Forward (+)

16336291 .. 16340314

Gene Structure 4024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G34110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1890 bp

ATGGCGCAGGTTCAACTTCAGGGTCAGACTCCGAATGGTTCGACCGCGGCGGTCACTTCTGCTCCGGCGACGTCAGGTGGAGCAACGGCGACCCAGTTTGGTAACACGTCGCTTTATGTGGGGGATCTCGATTTCAATGTGACGGACTCGCAGCTTTTCGATGCGTTTGGCCAAATGGGTACTGTGGTCACCGTTCGTGTCTGTAGGGATTTGGTCACTCGCCGATCTCTTGGCTATGGATACGTTAACTTCACCAATCCCCAAGACGCTGCAAGAGCGATCCAAGAACTGAATTACATACCTCTTTATGGAAAACCTATTAGGGTTATGTATTCTCATCGTGATCCTAGTGTTCGCCGAAGTGGCGCTGGCAACATTTTTATTAAGAATTTGGACGAGTCCATCGACCACAAAGCACTGCATGATACTTTTTCATCGTTTGGAAACATTGTGTCGTGCAAGGTAGCTGTCGATTCTTCAGGCCAGTCAAAAGGCTATGGGTTTGTGCAATACGCCAATGAAGAATCTGCCCAGAAAGCTATAGAGAAACTGAACGGCATGTTGCTCAATGACAAGCAAGTGTATGTGGGTCCTTTCCTGAGGAGACAAGAAAGAGACTCCACTGCTAACAAAACGAAATTCACCAATGTGTATGTGAAGAATCTCGCGGAAAGTACTACCGATGATGACTTGAAGAATGCTTTTGGCGAGTATGGAAAGATAACAAGTGCTGTCGTGATGAAAGATGGAGAAGGGAAGTCCAAGGGCTTTGGGTTTGTCAACTTTGAAAATGCTGATGATGCTGCTAGGGCTGTGGAGTCTCTCAATGGGCACAAATTTGATGATAAGGAGTGGTATGTTGGTAGAGCCCAGAAGAAGTCAGAGAGGGAAACAGAATTAAGGGTCCGTTATGAACAGAATTTGAAGGAAGCTGCAGACAAGTTTCAAAGTTCAAACTTGTATGTTAAGAATTTGGATCCTAGCATTTCAGATGAGAAACTTAAAGAGATCTTTTCTCCTTTTGGTACCGTTACATCTAGCAAGGTGATGCGGGATCCTAATGGAACAAGCAAAGGCTCAGGTTTTGTTGCTTTCGCAACTCCCGAAGAAGCAACTGAAGCTATGTCACAGTTGAGCGGTAAAATGATCGAAAGCAAGCCACTCTATGTGGCTATTGCACAGCGGAAGGAAGACAGAAGGGTCAGACTACAGGCTCAGTTTTCCCAAGTGAGGCCAGTTGCAATGCAGCCGTCTGTTGGTCCCCGCATGCCAGTGTATCCCCCGGGTGGTCCTGGTATTGGACAACAAATGTTCTATGGTCAGGCCCCTCCTGCCATGATTCCTCCCCAGCCTGGGTATGGATACCAACAGCAGCTTGTTCCTGGAATGAGACCTGGTGGGGGTCCTGTACCCAGTTTCTTCATGCCTATGGTTCAGCCACAGCAGCAGCGTCCTGGAGGAGGAAGACGTCCTGGGGGAATCCAACACTCCCAGCAGCAAAATCCCATGATGCAGCAACAGATGCATCCAAGGGGTCGGATGTTCCGGTATCCCCAAGGGCGTGGTGGTAGTGGTGATGTGCCTCCATATGATATGGGCAACAACATGCCATTGACTATTGGAGCTTTGGCTTCAAATCTGTCTAATGCTACTCCAGAGCAACAGAGGACGATGCTGGGTGAGGTGCTGTACCCGTTGGTGGAGCAGGTTGAGGCAGAGTCTGCAGCCAAAGTGACTGGGATGCTTTTGGAGATGGACCAGACTGAAGTGCTCCATCTGTTGGAGTCACCAGAAGCTCTCAAGGCCAAAGTTGCAGAGGCTATGGATGTTCTCAGGAGTGTCGCTGCTGGTGGTGCAACCGAGCAGCTCGCTTCCTTGAACCTCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006412 GO:0006413 GO:0006417 GO:0006446 GO:0006518 GO:0006807 GO:0006950 GO:0006970 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009628 GO:0009651 GO:0009889 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031329 GO:0032268 GO:0034248 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0060211 GO:0060255 GO:0061013 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:1900151 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1903311 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

PABP RRM_1

Protein Analysis

629

Amino Acids

68.67

Weight (kDa)

8.19

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	38 - 108	5.8e-19	RNA recognition motif
RRM_1	PF00076	126 - 194	2.3e-22	RNA recognition motif
RRM_1	PF00076	217 - 285	3.7e-24	RNA recognition motif
RRM_1	PF00076	320 - 388	1.1e-21	RNA recognition motif
MLLE	PF00658	547 - 611	2.6e-28	MLLE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49760 AT1G49760 AT4G34110
fragaria_vesca	FvH4_2g05720 FvH4_2g05720 FvH4_2g05720 FvH4_2g05720 FvH4_2g34040 FvH4_2g34040 FvH4_2g34040 FvH4_6g37220
malus_domestica	MD00G1138300.v1.1 MD05G1085100.v1.1 MD08G1096400.v1.1 MD15G1079100.v1.1
prunus_persica	Prupe.1G432200_v2.0.a1 Prupe.1G432200_v2.0.a1 Prupe.8G129400_v2.0.a1 Prupe.8G129400_v2.0.a1
pyrus_communis	pycom05g08430 pycom08g07840 pycom10g07970 pycom15g07370
rosa_chinensis	RchiOBHm_Chr6g0256591 RchiOBHm_Chr6g0308331
rosa_laevigata	RLG00000010649 RLG00000014752
rosa_multiflora	Rmu_sc0003012.1_g000007
rosa_roxburghii	Rroxscaffold_7G00160250 Rroxscaffold_7G00209190
rosa_rugosa	Rorug05G0564800 Rorug06G0366200 Rorug06G0366200
rosa_samantha	Rh6AG082800 Rh6AG475400 Rh6BG077400 Rh6CG072000 Rh6DG477300
rosa_wichuraiana	Rw6G007450 Rw6G041440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1199
AatII	GACGTC	2 cut(s)	74, 1471
Acc36I	ACCTGC	1 cut(s)	1696
Acc65I	GGTACC	1 cut(s)	1025
AccB1I	GGYRCC	1 cut(s)	1025
AccB7I	CCANNNNNTGG	1 cut(s)	1780
AccBSI	CCGCTC	1 cut(s)	1137
AccII	CGCG	2 cut(s)	47, 668
AciI	CCGC	8 cut(s)	45, 47, 50, 668, 1051, 1137, 1183, 1264
AclWI	GGATC	7 cut(s)	132, 274, 338, 971, 984, 1049, 1062
AcoI	YGGCCR	1 cut(s)	169
AcsI	RAATTY	5 cut(s)	388, 638, 836, 919, 970
AcuI	CTGAAG	3 cut(s)	462, 1137, 1785
AcyI	GRCGYC	2 cut(s)	71, 1468
AfaI	GTAC	5 cut(s)	181, 676, 1027, 1410, 1691
AflIII	ACRYGT	1 cut(s)	105
AgsI	TTSAA	9 cut(s)	14, 136, 694, 788, 925, 947, 954, 1635, 1879
AjiI	CACGTC	1 cut(s)	108
AjnI	CCWGG	6 cut(s)	1291, 1351, 1381, 1393, 1453, 1471
AleI	CACNNNNGTG	1 cut(s)	647
AluBI	AGCT	9 cut(s)	154, 467, 539, 932, 1121, 1375, 1625, 1796, 1867
AluI	AGCT	9 cut(s)	154, 467, 539, 932, 1121, 1375, 1625, 1796, 1867
Alw21I	GWGCWC	1 cut(s)	1773
Alw26I	GTCTC	4 cut(s)	598, 609, 825, 1384
AlwI	GGATC	7 cut(s)	132, 274, 338, 971, 984, 1049, 1062
AlwNI	CAGNNNCTG	1 cut(s)	1721
Ama87I	CYCGRG	1 cut(s)	1282
AoxI	GGCC	5 cut(s)	169, 481, 1232, 1323, 1803
ApoI	RAATTY	5 cut(s)	388, 638, 836, 919, 970
Asp718I	GGTACC	1 cut(s)	1025
AspLEI	GCGC	2 cut(s)	7, 368
AspS9I	GGNCC	7 cut(s)	590, 904, 1259, 1289, 1324, 1403, 1756
AsuC2I	CCSGG	2 cut(s)	1283, 1284
AsuHPI	GGTGA	7 cut(s)	181, 244, 634, 1057, 1586, 1691, 1779
AvaI	CYCGRG	1 cut(s)	1282
AvaII	GGWCC	6 cut(s)	590, 904, 1259, 1289, 1403, 1756
AxyI	CCTNAGG	1 cut(s)	599
BaeGI	GKGCMC	1 cut(s)	834
BaeI	ACNNNNGTAYC	2 cut(s)	171, 204
BalI	TGGCCA	1 cut(s)	171
BamHI	GGATCC	2 cut(s)	976, 1054
BanI	GGYRCC	1 cut(s)	1025
BanII	GRGCYC	1 cut(s)	871
BbsI	GAAGAC	2 cut(s)	1197, 1471
Bbv12I	GWGCWC	1 cut(s)	1773
BccI	CCATC	4 cut(s)	410, 740, 1747, 1782
BceAI	ACGGC	3 cut(s)	102, 571, 1234
BciT130I	CCWGG	6 cut(s)	1293, 1353, 1383, 1395, 1455, 1473
BciVI	GTATCC	4 cut(s)	233, 1287, 1355, 1560
BcnI	CCSGG	2 cut(s)	1283, 1284
BcoDI	GTCTC	4 cut(s)	598, 609, 825, 1384
BfaI	CTAG	4 cut(s)	348, 807, 981, 1038
BfmI	CTRYAG	5 cut(s)	202, 540, 933, 1208, 1722
BfoI	RGCGCY	1 cut(s)	369
BfuAI	ACCTGC	1 cut(s)	1696
BfuI	GTATCC	4 cut(s)	233, 1287, 1355, 1560
BglI	GCCNNNNNGGC	1 cut(s)	363
BglII	AGATCT	1 cut(s)	1008
BmcAI	AGTACT	1 cut(s)	676
Bme1390I	CCNGG	8 cut(s)	1283, 1284, 1293, 1353, 1383, 1395, 1455, 1473
Bme18I	GGWCC	6 cut(s)	590, 904, 1259, 1289, 1403, 1756
BmeT110I	CYCGRG	1 cut(s)	1282
BmgBI	CACGTC	1 cut(s)	108
BmgT120I	GGNCC	7 cut(s)	590, 904, 1259, 1289, 1324, 1403, 1756
BmiI	GGNNCC	8 cut(s)	591, 905, 978, 1027, 1056, 1261, 1326, 1404
BmrFI	CCNGG	8 cut(s)	1283, 1284, 1293, 1353, 1383, 1395, 1455, 1473
BmrI	ACTGGG	3 cut(s)	88, 1407, 1746
BmsI	GCATC	8 cut(s)	151, 790, 1038, 1500, 1512, 1534, 1662, 1731
BmuI	ACTGGG	3 cut(s)	88, 1407, 1746
BpiI	GAAGAC	2 cut(s)	1197, 1471
BpmI	CTGGAG	2 cut(s)	1476, 1638
Bpu10I	CCTNAGC	1 cut(s)	1078
BpuEI	CTTGAG	1 cut(s)	1784
BpuMI	CCSGG	2 cut(s)	1283, 1284
BsaHI	GRCGYC	2 cut(s)	71, 1468
BsaI	GGTCTC	1 cut(s)	1384
BsaJI	CCNNGG	8 cut(s)	45, 762, 1281, 1282, 1352, 1472, 1529, 1555
BsaWI	WCCGGW	1 cut(s)	1545
BsaXI	ACNNNNNCTCC	2 cut(s)	46, 76
Bse1I	ACTGG	6 cut(s)	94, 484, 1235, 1271, 1413, 1741
Bse21I	CCTNAGG	1 cut(s)	599
Bse3DI	GCAATG	1 cut(s)	1248
BseBI	CCWGG	6 cut(s)	1293, 1353, 1383, 1395, 1455, 1473
BseDI	CCNNGG	8 cut(s)	45, 762, 1281, 1282, 1352, 1472, 1529, 1555
BseGI	GGATG	4 cut(s)	1525, 1545, 1746, 1831
BseMI	GCAATG	1 cut(s)	1248
BseMII	CTCAG	4 cut(s)	590, 1092, 1229, 1846
BseNI	ACTGG	6 cut(s)	94, 484, 1235, 1271, 1413, 1741
BseRI	GAGGAG	2 cut(s)	616, 1473
BseSI	GKGCMC	1 cut(s)	834
BseYI	CCCAGC	3 cut(s)	1347, 1491, 1675
Bsh1236I	CGCG	2 cut(s)	47, 668
Bsh1285I	CGRYCG	1 cut(s)	45
BshFI	GGCC	5 cut(s)	171, 483, 1234, 1325, 1805
BshNI	GGYRCC	1 cut(s)	1025
BsiEI	CGRYCG	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	1773
BsiHKCI	CYCGRG	1 cut(s)	1282
BsiSI	CCGG	3 cut(s)	65, 1283, 1546
BslFI	GGGAC	1 cut(s)	1245
BsmAI	GTCTC	4 cut(s)	598, 609, 825, 1384
BsmFI	GGGAC	1 cut(s)	1245
BsmI	GAATGC	1 cut(s)	703
BsnI	GGCC	5 cut(s)	171, 483, 1234, 1325, 1805
Bso31I	GGTCTC	1 cut(s)	1384
BsoBI	CYCGRG	1 cut(s)	1282
Bsp1286I	GDGCHC	3 cut(s)	834, 871, 1773
Bsp143I	GATC	8 cut(s)	124, 224, 279, 343, 976, 1008, 1054, 1146
BspACI	CCGC	8 cut(s)	45, 47, 50, 668, 1051, 1137, 1183, 1264
BspANI	GGCC	5 cut(s)	171, 483, 1234, 1325, 1805
BspCNI	CTCAG	4 cut(s)	591, 1091, 1228, 1845
BspFNI	CGCG	2 cut(s)	47, 668
BspLI	GGNNCC	8 cut(s)	591, 905, 978, 1027, 1056, 1261, 1326, 1404
BspMAI	CTGCAG	2 cut(s)	937, 1726
BspMI	ACCTGC	1 cut(s)	1696
BspPI	GGATC	7 cut(s)	132, 274, 338, 971, 984, 1049, 1062
BspT107I	GGYRCC	1 cut(s)	1025
BspTNI	GGTCTC	1 cut(s)	1384
BsrBI	CCGCTC	1 cut(s)	1137
BsrDI	GCAATG	1 cut(s)	1248
BsrI	ACTGG	6 cut(s)	94, 484, 1235, 1271, 1413, 1741
BssECI	CCNNGG	8 cut(s)	45, 762, 1281, 1282, 1352, 1472, 1529, 1555
BssMI	GATC	8 cut(s)	124, 224, 279, 343, 976, 1008, 1054, 1146
BssNI	GRCGYC	2 cut(s)	71, 1468
BssT1I	CCWWGG	3 cut(s)	762, 1529, 1555
Bst2UI	CCWGG	6 cut(s)	1293, 1353, 1383, 1395, 1455, 1473
Bst4CI	ACNGT	4 cut(s)	184, 193, 1030, 1131
BstACI	GRCGYC	2 cut(s)	71, 1468
BstAPI	GCANNNNNTGC	2 cut(s)	1522, 1721
BstC8I	GCNNGC	4 cut(s)	370, 1157, 1268, 1869
BstDEI	CTNAG	4 cut(s)	599, 1078, 1215, 1832
BstDSI	CCRYGG	1 cut(s)	45
BstEII	GGTNACC	1 cut(s)	187
BstENI	CCTNNNNNAGG	1 cut(s)	1458
BstF5I	GGATG	4 cut(s)	1525, 1545, 1746, 1831
BstFNI	CGCG	2 cut(s)	47, 668
BstH2I	RGCGCY	1 cut(s)	369
BstHHI	GCGC	2 cut(s)	7, 368
BstKTI	GATC	8 cut(s)	127, 227, 282, 346, 979, 1011, 1057, 1149
BstMAI	GTCTC	4 cut(s)	598, 609, 825, 1384
BstMBI	GATC	8 cut(s)	124, 224, 279, 343, 976, 1008, 1054, 1146
BstMCI	CGRYCG	1 cut(s)	45
BstNI	CCWGG	6 cut(s)	1293, 1353, 1383, 1395, 1455, 1473
BstNSI	RCATGY	3 cut(s)	562, 1270, 1609
BstPI	GGTNACC	1 cut(s)	187
BstSCI	CCNGG	8 cut(s)	1281, 1282, 1291, 1351, 1381, 1393, 1453, 1471
BstSFI	CTRYAG	5 cut(s)	202, 540, 933, 1208, 1722
BstSLI	GKGCMC	1 cut(s)	834
BstUI	CGCG	2 cut(s)	47, 668
BstV2I	GAAGAC	2 cut(s)	1197, 1471
BstX2I	RGATCY	4 cut(s)	124, 976, 1008, 1054
BstXI	CCANNNNNNTGG	1 cut(s)	1562
BstYI	RGATCY	4 cut(s)	124, 976, 1008, 1054
Bsu36I	CCTNAGG	1 cut(s)	599
BsuI	GTATCC	4 cut(s)	233, 1287, 1355, 1560
BsuRI	GGCC	5 cut(s)	171, 483, 1234, 1325, 1805
BtgI	CCRYGG	1 cut(s)	45
BtrI	CACGTC	1 cut(s)	108
BtsCI	GGATG	4 cut(s)	1525, 1545, 1746, 1831
BtsI	GCAGTG	2 cut(s)	416, 621
BtsIMutI	CAGTG	3 cut(s)	416, 621, 1278
BveI	ACCTGC	1 cut(s)	1696
Cac8I	GCNNGC	4 cut(s)	370, 1157, 1268, 1869
CaiI	CAGNNNCTG	1 cut(s)	1721
CfoI	GCGC	2 cut(s)	7, 368
Cfr13I	GGNCC	7 cut(s)	590, 904, 1259, 1289, 1324, 1403, 1756
Cfr42I	CCGCGG	1 cut(s)	48
Cfr9I	CCCGGG	1 cut(s)	1282
CseI	GACGC	2 cut(s)	275, 1439
CsiI	ACCWGGT	1 cut(s)	1393
Csp6I	GTAC	5 cut(s)	180, 675, 1026, 1409, 1690
CviAII	CATG	7 cut(s)	422, 559, 1267, 1336, 1423, 1507, 1606
CviQI	GTAC	5 cut(s)	180, 675, 1026, 1409, 1690
DdeI	CTNAG	4 cut(s)	599, 1078, 1215, 1832
DpnI	GATC	8 cut(s)	126, 226, 281, 345, 978, 1010, 1056, 1148
DpnII	GATC	8 cut(s)	124, 224, 279, 343, 976, 1008, 1054, 1146
DrdI	GACNNNNNNGTC	1 cut(s)	1199
DseDI	GACNNNNNNGTC	1 cut(s)	1199
EaeI	YGGCCR	1 cut(s)	169
Eco130I	CCWWGG	3 cut(s)	762, 1529, 1555
Eco24I	GRGCYC	1 cut(s)	871
Eco31I	GGTCTC	1 cut(s)	1384
Eco47I	GGWCC	6 cut(s)	590, 904, 1259, 1289, 1403, 1756
Eco57I	CTGAAG	3 cut(s)	462, 1137, 1785
Eco81I	CCTNAGG	1 cut(s)	599
Eco88I	CYCGRG	1 cut(s)	1282
Eco91I	GGTNACC	1 cut(s)	187
EcoNI	CCTNNNNNAGG	1 cut(s)	1458
EcoO109I	RGGNCCY	3 cut(s)	590, 1324, 1403
EcoO65I	GGTNACC	1 cut(s)	187
EcoRII	CCWGG	6 cut(s)	1291, 1351, 1381, 1393, 1453, 1471
EcoT14I	CCWWGG	3 cut(s)	762, 1529, 1555
EcoT22I	ATGCAT	1 cut(s)	1527
EcoT38I	GRGCYC	1 cut(s)	871
ErhI	CCWWGG	3 cut(s)	762, 1529, 1555
FaeI	CATG	7 cut(s)	425, 562, 1270, 1339, 1426, 1510, 1609
FaqI	GGGAC	1 cut(s)	1245
FatI	CATG	7 cut(s)	421, 558, 1266, 1335, 1422, 1506, 1605
FauI	CCCGC	2 cut(s)	1044, 1271
FauNDI	CATATG	1 cut(s)	1588
FokI	GGATG	4 cut(s)	1512, 1552, 1753, 1838
FriOI	GRGCYC	1 cut(s)	871
FspBI	CTAG	4 cut(s)	348, 807, 981, 1038
GlaI	GCGC	2 cut(s)	6, 367
GsaI	CCCAGC	3 cut(s)	1351, 1495, 1679
GsuI	CTGGAG	2 cut(s)	1476, 1638
HaeII	RGCGCY	1 cut(s)	369
HaeIII	GGCC	5 cut(s)	171, 483, 1234, 1325, 1805
HapII	CCGG	3 cut(s)	65, 1283, 1546
HgaI	GACGC	2 cut(s)	275, 1439
HhaI	GCGC	2 cut(s)	7, 368
Hin1I	GRCGYC	2 cut(s)	71, 1468
Hin1II	CATG	7 cut(s)	425, 562, 1270, 1339, 1426, 1510, 1609
Hin6I	GCGC	2 cut(s)	5, 366
HinP1I	GCGC	2 cut(s)	5, 366
HincII	GTYRAC	2 cut(s)	247, 781
HindII	GTYRAC	2 cut(s)	247, 781
HpaI	GTTAAC	1 cut(s)	247
HpaII	CCGG	3 cut(s)	65, 1283, 1546
HphI	GGTGA	7 cut(s)	181, 244, 634, 1057, 1586, 1691, 1779
Hpy166II	GTNNAC	2 cut(s)	247, 781
Hpy188I	TCNGA	6 cut(s)	27, 33, 883, 991, 1205, 1539
Hpy188III	TCNNGA	7 cut(s)	128, 341, 598, 736, 1103, 1655, 1834
Hpy8I	GTNNAC	2 cut(s)	247, 781
Hpy99I	CGWCG	2 cut(s)	73, 112
HpyAV	CCTTC	4 cut(s)	746, 919, 1180, 1191
HpyCH4III	ACNGT	4 cut(s)	184, 193, 1030, 1131
HpyCH4IV	ACGT	4 cut(s)	71, 107, 243, 1468
HpyF3I	CTNAG	4 cut(s)	599, 1078, 1215, 1832
HpySE526I	ACGT	4 cut(s)	71, 107, 243, 1468
Hsp92I	GRCGYC	2 cut(s)	71, 1468
Hsp92II	CATG	7 cut(s)	425, 562, 1270, 1339, 1426, 1510, 1609
HspAI	GCGC	2 cut(s)	5, 366
KpnI	GGTACC	1 cut(s)	1029
KspAI	GTTAAC	1 cut(s)	247
KspI	CCGCGG	1 cut(s)	48
Kzo9I	GATC	8 cut(s)	124, 224, 279, 343, 976, 1008, 1054, 1146
LmnI	GCTCC	5 cut(s)	67, 80, 1622, 1702, 1776
LweI	GCATC	8 cut(s)	151, 790, 1038, 1500, 1512, 1534, 1662, 1731
MabI	ACCWGGT	1 cut(s)	1393
MaeI	CTAG	4 cut(s)	348, 807, 981, 1038
MaeII	ACGT	4 cut(s)	71, 107, 243, 1468
MaeIII	GTNAC	9 cut(s)	52, 101, 139, 187, 214, 1030, 1125, 1732, 1785
MalI	GATC	8 cut(s)	126, 226, 281, 345, 978, 1010, 1056, 1148
MbiI	CCGCTC	1 cut(s)	1137
MboI	GATC	8 cut(s)	124, 224, 279, 343, 976, 1008, 1054, 1146
MboII	GAAGA	9 cut(s)	468, 533, 670, 706, 886, 1118, 1202, 1411, 1476
MflI	RGATCY	4 cut(s)	124, 976, 1008, 1054
MhlI	GDGCHC	3 cut(s)	834, 871, 1773
MlsI	TGGCCA	1 cut(s)	171
MluCI	AATT	7 cut(s)	292, 388, 638, 836, 896, 919, 970
MluNI	TGGCCA	1 cut(s)	171
MlyI	GAGTC	7 cut(s)	22, 140, 407, 611, 827, 1727, 1793
MmeI	TCCRAC	3 cut(s)	1507, 1517, 1761
Mox20I	TGGCCA	1 cut(s)	171
Mph1103I	ATGCAT	1 cut(s)	1527
MscI	TGGCCA	1 cut(s)	171
MseI	TTAA	6 cut(s)	246, 384, 899, 966, 1002, 1888
MslI	CAYNNNNRTG	3 cut(s)	647, 1271, 1427
Msp20I	TGGCCA	1 cut(s)	171
MspA1I	CMGCKG	2 cut(s)	47, 1183
MspI	CCGG	3 cut(s)	65, 1283, 1546
MspR9I	CCNGG	8 cut(s)	1283, 1284, 1293, 1353, 1383, 1395, 1455, 1473
Mva1269I	GAATGC	1 cut(s)	703
MvaI	CCWGG	6 cut(s)	1293, 1353, 1383, 1395, 1455, 1473
MvnI	CGCG	2 cut(s)	47, 668
NciI	CCSGG	2 cut(s)	1283, 1284
NdeI	CATATG	1 cut(s)	1588
NdeII	GATC	8 cut(s)	124, 224, 279, 343, 976, 1008, 1054, 1146
NlaIII	CATG	7 cut(s)	425, 562, 1270, 1339, 1426, 1510, 1609
NlaIV	GGNNCC	8 cut(s)	591, 905, 978, 1027, 1056, 1261, 1326, 1404
NmuCI	GTSAC	7 cut(s)	52, 139, 187, 214, 1125, 1732, 1785
NsiI	ATGCAT	1 cut(s)	1527
NspI	RCATGY	3 cut(s)	562, 1270, 1609
OliI	CACNNNNGTG	1 cut(s)	647
PaeI	GCATGC	1 cut(s)	1270
PcsI	WCGNNNNNNNCGW	2 cut(s)	402, 1101
PctI	GAATGC	1 cut(s)	703
PfeI	GAWTC	5 cut(s)	473, 524, 661, 1339, 1479
PflMI	CCANNNNNTGG	1 cut(s)	1780
PfoI	TCCNGGA	2 cut(s)	1381, 1453
PleI	GAGTC	7 cut(s)	22, 140, 406, 611, 826, 1726, 1792
PpsI	GAGTC	7 cut(s)	22, 140, 406, 611, 826, 1726, 1792
PpuMI	RGGWCCY	2 cut(s)	590, 1403
Psp5II	RGGWCCY	2 cut(s)	590, 1403
Psp6I	CCWGG	6 cut(s)	1291, 1351, 1381, 1393, 1453, 1471
PspEI	GGTNACC	1 cut(s)	187
PspFI	CCCAGC	3 cut(s)	1347, 1491, 1675
PspGI	CCWGG	6 cut(s)	1291, 1351, 1381, 1393, 1453, 1471
PspN4I	GGNNCC	8 cut(s)	591, 905, 978, 1027, 1056, 1261, 1326, 1404
PspPI	GGNCC	7 cut(s)	590, 904, 1259, 1289, 1324, 1403, 1756
PspPPI	RGGWCCY	2 cut(s)	590, 1403
PstI	CTGCAG	2 cut(s)	937, 1726
PstNI	CAGNNNCTG	1 cut(s)	1721
PsuI	RGATCY	4 cut(s)	124, 976, 1008, 1054
RsaI	GTAC	5 cut(s)	181, 676, 1027, 1410, 1691
RsaNI	GTAC	5 cut(s)	180, 675, 1026, 1409, 1690
RseI	CAYNNNNRTG	3 cut(s)	647, 1271, 1427
SacII	CCGCGG	1 cut(s)	48
SaqAI	TTAA	6 cut(s)	246, 384, 899, 966, 1002, 1888
Sau3AI	GATC	8 cut(s)	124, 224, 279, 343, 976, 1008, 1054, 1146
Sau96I	GGNCC	7 cut(s)	590, 904, 1259, 1289, 1324, 1403, 1756
ScaI	AGTACT	1 cut(s)	676
SchI	GAGTC	7 cut(s)	22, 140, 407, 611, 827, 1727, 1793
ScrFI	CCNGG	8 cut(s)	1283, 1284, 1293, 1353, 1383, 1395, 1455, 1473
SduI	GDGCHC	3 cut(s)	834, 871, 1773
SexAI	ACCWGGT	1 cut(s)	1393
SfaNI	GCATC	8 cut(s)	151, 790, 1038, 1500, 1512, 1534, 1662, 1731
SfcI	CTRYAG	5 cut(s)	202, 540, 933, 1208, 1722
Sfr303I	CCGCGG	1 cut(s)	48
SgrBI	CCGCGG	1 cut(s)	48
SinI	GGWCC	6 cut(s)	590, 904, 1259, 1289, 1403, 1756
SmaI	CCCGGG	1 cut(s)	1284
SmiMI	CAYNNNNRTG	3 cut(s)	647, 1271, 1427
SmlI	CTYRAG	1 cut(s)	1799
SmoI	CTYRAG	1 cut(s)	1799
SphI	GCATGC	1 cut(s)	1270
Sse9I	AATT	7 cut(s)	292, 388, 638, 836, 896, 919, 970
SsiI	CCGC	8 cut(s)	45, 47, 50, 668, 1051, 1137, 1183, 1264
SspMI	CTAG	4 cut(s)	348, 807, 981, 1038
StyD4I	CCNGG	8 cut(s)	1281, 1282, 1291, 1351, 1381, 1393, 1453, 1471
StyI	CCWWGG	3 cut(s)	762, 1529, 1555
TaaI	ACNGT	4 cut(s)	184, 193, 1030, 1131
TaiI	ACGT	4 cut(s)	74, 110, 246, 1471
TaqI	TCGA	6 cut(s)	41, 129, 159, 405, 471, 1149
TasI	AATT	7 cut(s)	292, 388, 638, 836, 896, 919, 970
TatI	WGTACW	1 cut(s)	674
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	5 cut(s)	473, 524, 661, 1339, 1479
Tru1I	TTAA	6 cut(s)	246, 384, 899, 966, 1002, 1888
Tru9I	TTAA	6 cut(s)	246, 384, 899, 966, 1002, 1888
TscAI	CASTG	3 cut(s)	423, 628, 1278
TseFI	GTSAC	7 cut(s)	52, 139, 187, 214, 1125, 1732, 1785
Tsp45I	GTSAC	7 cut(s)	52, 139, 187, 214, 1125, 1732, 1785
TspDTI	ATGAA	5 cut(s)	423, 534, 755, 927, 1411
TspGWI	ACGGA	2 cut(s)	158, 896
TspMI	CCCGGG	1 cut(s)	1282
TspRI	CASTG	3 cut(s)	423, 628, 1278
Van91I	CCANNNNNTGG	1 cut(s)	1780
VpaK11BI	GGWCC	6 cut(s)	590, 904, 1259, 1289, 1403, 1756
XagI	CCTNNNNNAGG	1 cut(s)	1458
XapI	RAATTY	5 cut(s)	388, 638, 836, 919, 970
XceI	RCATGY	3 cut(s)	562, 1270, 1609
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1355, 1562
XmaI	CCCGGG	1 cut(s)	1282
XspI	CTAG	4 cut(s)	348, 807, 981, 1038
ZraI	GACGTC	2 cut(s)	72, 1469
ZrmI	AGTACT	1 cut(s)	676
Zsp2I	ATGCAT	1 cut(s)	1527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.