Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002657

Physical Location & Seq

Genomic Coordinates Reverse (-)

64252248 .. 64255986

Gene Structure 3739 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG477300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1950 bp

ATGGCTCAGATTCAAGTTCAGCATCAGGCTCCGGTGACCGGTCCGAACGGCGTCGCTGTCAACGCCGGTGGTCAGCAACAGATGGTGTCCACGTCGCTTTACGTCGGGGATCTGGAGCAGACTGTGACCGACTCGCAGCTCTACGATCTGTTCAATCAGGTCGGCCAGGTCGTCTCCGTTAGGGTTTGCAGGGACTTGTCCACTCGCAGATCTCTTGGTTATGGCTATGTTAATTATAGCAACCCTCAGGATGCTGCGAGGGCACTAGAAGTACTGAACTTCACTCCACTGAATGGCAAATCTATCAGAATTTGCTATTCTCTTCGGGACCCTACTATTAGAAAGAGTGGTACTGGGAATATTTTTATCAAGAATCTGGACAAGGGAATTGACCACAAGGCATTGCATGATACATTCTCGTCTTTTGGCAACATACTTTCTTGCAAGATAGCTACGGATGCTTCTGGGCAGTCCAAGGGCTATGGTTTTGTTCAATTTGACAAGGAAGAAGCTGCTGAGAGTGCCATAGAGAAGTTAAATGGCATGCTGTTAAATGATAAACAAGTGTACGTAGGTCCCTTTCTCCGTAGGCAGGAGAGGGATGGTGCTTTGCAGAAGACAAAATTTAGCAATGTCTACGTGAAAAATATATCAGAATCTACTACAGATGATGACTTGAAGAAAATTTTTGGTGAACATGGACCCATTACCAGTGCTGTAGTGATGAGGGATGGTGATGGCAAATCAAGGGGTTTTGGTTTTGTCAACTTTGATAACCCAGATGATGCTGCTAAAGCCGTTGAGCTTCTGAATGGAAAGCAATTTGATGATAAGGAATGGTATGTTGGCAAAGCCCAGAAGAAGACTGAAAGAGAAGTTGAACTGAAGGAGAAATTTGAGCACAGCATGAAGGAAGCTAGTGATAAATTTCAAGGTGTGAATTTGTATATCAAGAACTTGGATGATAGCATTGATGATGAGAAACTTAAGGAAATATTCTCCGAGTATGGTACGGTCACATCTTGCAAGGTTATGCGTGACCCTGAAGGAGTTAGTCGTGGTTCTGGTTTTGTTGCCTTCTCGACTTCTGAAGAAGCTTCTCGAGCTCTTACGGAGATGAATGGCAAAATGGTTGTTAGCAAGCCTCTTTATGTTGCACTCGCACAACGGAAGGAAGAGAGAAGGGCAAGGTTGCAGGCTCAGTTTTCACAAATGAGGCCTGTTGCTATGGCTCCTTCAGTGGCTCCTCGTTTACCAATGTACCCTCCTGGTGCTCCAGGTCTAGGGCAACAATTTATGTATGGGCAAGGGCCTCCAACCATAATTCCACAGCAAGCTGGATTTGGTTACCAACAGCAACTTGTGCCAGGATTGAGGCCTGGAGGTGCTCCTATGCCAAACTTCTTTGTTCCAATGGTCCAACAGGGTCAGCAAGGCCAACGCCCAGGAGGTCGACGTGGGGCAGGTCCTGTGCAACAAAACCAGCAGCAAGTGCCACTGATGCCGCAGCACATGATTCCAAGGGGACGTATGTATCGCTTTCCACCTGGTCGCAATATGCCAGAAGCTCCATTTTCTGGTGGTATGCTCTCAGTTCCATATGACATGGGTGGCATGCCTATGCGTGATCCTGCAGGGGGACGTGCTATGCCTGTTCCTGCTTTGGCTTCATCCCTTGCAAATGCTACACCAGAAGAACAGAGGACGATGCTTGGTGAAGCTTTATATCCCCAAGTTGATGCTTTGGAGCCCGACTCAGCAGCCAAGGTTACAGGCATGCTTCTGGAGATGGACCAGACTGAGGTTTTGCATTTGCTCGAGTCACCGGAGGCTCTGAAGGCAAAGGTTGCAGAGGCAATAGAGGTCCTGAGGAATGTTACCCAACATCAGGTTAACAACAATGCTGATCAGTTAGCATCAATATCTCTGACTGACAAGCTTGTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006412 GO:0006413 GO:0006417 GO:0006446 GO:0006518 GO:0006807 GO:0006950 GO:0006970 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009628 GO:0009651 GO:0009889 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031329 GO:0032268 GO:0034248 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0060211 GO:0060255 GO:0061013 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:1900151 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1903311 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

PABP RRM_1

Protein Analysis

649

Amino Acids

71.2

Weight (kDa)

6.75

Isoelectric Point (pI)

41.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	33 - 103	3.2e-19	RNA recognition motif
RRM_1	PF00076	121 - 189	2.2e-21	RNA recognition motif
RRM_1	PF00076	212 - 280	9.6e-24	RNA recognition motif
RRM_1	PF00076	315 - 383	1.2e-19	RNA recognition motif
MLLE	PF00658	559 - 623	4.3e-29	MLLE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49760 AT1G49760 AT4G34110
fragaria_vesca	FvH4_2g05720 FvH4_2g05720 FvH4_2g05720 FvH4_2g05720 FvH4_2g34040 FvH4_2g34040 FvH4_2g34040 FvH4_6g37220
malus_domestica	MD00G1138300.v1.1 MD05G1085100.v1.1 MD08G1096400.v1.1 MD15G1079100.v1.1
prunus_persica	Prupe.1G432200_v2.0.a1 Prupe.1G432200_v2.0.a1 Prupe.8G129400_v2.0.a1 Prupe.8G129400_v2.0.a1
pyrus_communis	pycom05g08430 pycom08g07840 pycom10g07970 pycom15g07370
rosa_chinensis	RchiOBHm_Chr6g0256591 RchiOBHm_Chr6g0308331
rosa_laevigata	RLG00000010649 RLG00000014752
rosa_multiflora	Rmu_sc0003012.1_g000007
rosa_roxburghii	Rroxscaffold_7G00160250 Rroxscaffold_7G00209190
rosa_rugosa	Rorug05G0564800 Rorug06G0366200 Rorug06G0366200
rosa_samantha	Rh6AG082800 Rh6AG475400 Rh6BG077400 Rh6CG072000 Rh6DG477300
rosa_wichuraiana	Rw6G007450 Rw6G041440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1454
AccB7I	CCANNNNNTGG	2 cut(s)	293, 1577
AccI	GTMKAC	2 cut(s)	636, 1453
AciI	CCGC	1 cut(s)	1505
AclWI	GGATC	2 cut(s)	117, 1622
AcoI	YGGCCR	1 cut(s)	163
AcsI	RAATTY	6 cut(s)	309, 623, 684, 893, 926, 940
AcuI	CTGAAG	5 cut(s)	905, 1065, 1110, 1221, 1856
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	5 cut(s)	273, 352, 569, 1012, 1262
AfiI	CCNNNNNNNGG	8 cut(s)	38, 293, 592, 1283, 1577, 1637, 1801, 1888
AflII	CTTAAG	1 cut(s)	986
AgeI	ACCGGT	1 cut(s)	38
AgsI	TTSAA	6 cut(s)	14, 154, 494, 679, 881, 932
AjiI	CACGTC	3 cut(s)	93, 1457, 1643
AjnI	CCWGG	7 cut(s)	165, 1267, 1276, 1366, 1378, 1444, 1546
AjuI	GAANNNNNNNTTGG	2 cut(s)	828, 860
Alw21I	GWGCWC	4 cut(s)	903, 1108, 1276, 1390
Alw26I	GTCTC	1 cut(s)	178
AlwI	GGATC	2 cut(s)	117, 1622
AlwNI	CAGNNNCTG	1 cut(s)	1469
Ama87I	CYCGRG	2 cut(s)	1101, 1817
AoxI	GGCC	5 cut(s)	163, 1217, 1310, 1376, 1435
ApeKI	GCWGC	7 cut(s)	136, 254, 512, 788, 1486, 1507, 1760
ApoI	RAATTY	6 cut(s)	309, 623, 684, 893, 926, 940
ArsI	GACNNNNNNTTYG	2 cut(s)	1789, 1821
AsiGI	ACCGGT	1 cut(s)	38
AspS9I	GGNCC	9 cut(s)	41, 328, 575, 701, 1310, 1417, 1466, 1792, 1864
AsuHPI	GGTGA	5 cut(s)	46, 704, 746, 1727, 1815
AvaI	CYCGRG	2 cut(s)	1101, 1817
AvaII	GGWCC	8 cut(s)	41, 328, 575, 701, 1417, 1466, 1792, 1864
AxyI	CCTNAGG	2 cut(s)	246, 1868
BaeGI	GKGCMC	1 cut(s)	265
BaeI	ACNNNNGTAYC	4 cut(s)	1244, 1277, 1517, 1550
BanII	GRGCYC	2 cut(s)	1108, 1752
BbsI	GAAGAC	2 cut(s)	623, 869
Bbv12I	GWGCWC	4 cut(s)	903, 1108, 1276, 1390
BbvI	GCAGC	7 cut(s)	148, 241, 499, 775, 1498, 1519, 1772
BccI	CCATC	5 cut(s)	76, 596, 725, 731, 1783
BceAI	ACGGC	2 cut(s)	64, 782
BciT130I	CCWGG	7 cut(s)	167, 1269, 1278, 1368, 1380, 1446, 1548
BclI	TGATCA	1 cut(s)	1906
BcoDI	GTCTC	1 cut(s)	178
BfaI	CTAG	3 cut(s)	266, 918, 1283
BfmI	CTRYAG	3 cut(s)	663, 717, 1632
BfrI	CTTAAG	1 cut(s)	986
BfuAI	ACCTGC	1 cut(s)	1454
BglII	AGATCT	1 cut(s)	209
BisI	GCNGC	8 cut(s)	137, 255, 513, 789, 1487, 1505, 1508, 1761
BlsI	GCNGC	8 cut(s)	138, 256, 514, 790, 1488, 1506, 1509, 1762
BmcAI	AGTACT	1 cut(s)	273
Bme1390I	CCNGG	7 cut(s)	167, 1269, 1278, 1368, 1380, 1446, 1548
Bme18I	GGWCC	8 cut(s)	41, 328, 575, 701, 1417, 1466, 1792, 1864
BmeT110I	CYCGRG	2 cut(s)	1101, 1817
BmgBI	CACGTC	3 cut(s)	93, 1457, 1643
BmgT120I	GGNCC	9 cut(s)	41, 328, 575, 701, 1310, 1417, 1466, 1792, 1864
BmiI	GGNNCC	8 cut(s)	30, 329, 330, 577, 703, 1233, 1245, 1749
BmrFI	CCNGG	7 cut(s)	167, 1269, 1278, 1368, 1380, 1446, 1548
BmrI	ACTGGG	1 cut(s)	363
BmsI	GCATC	8 cut(s)	31, 241, 448, 775, 1491, 1698, 1729, 1925
BmuI	ACTGGG	1 cut(s)	363
BpiI	GAAGAC	2 cut(s)	623, 869
BplI	GAGNNNNNCTC	2 cut(s)	1739, 1771
BpmI	CTGGAG	4 cut(s)	134, 1260, 1401, 1805
BsaAI	YACGTR	2 cut(s)	571, 640
BsaHI	GRCGYC	1 cut(s)	51
BsaJI	CCNNGG	4 cut(s)	474, 1444, 1520, 1764
BsaWI	WCCGGW	3 cut(s)	31, 38, 1825
Bsc4I	CCNNNNNNNGG	8 cut(s)	38, 293, 592, 1283, 1577, 1637, 1801, 1888
Bse118I	RCCGGY	2 cut(s)	38, 65
Bse1I	ACTGG	2 cut(s)	358, 711
Bse21I	CCTNAGG	2 cut(s)	246, 1868
Bse3DI	GCAATG	2 cut(s)	401, 637
BseBI	CCWGG	7 cut(s)	167, 1269, 1278, 1368, 1380, 1446, 1548
BseDI	CCNNGG	4 cut(s)	474, 1444, 1520, 1764
BseGI	GGATG	6 cut(s)	256, 463, 607, 736, 967, 1670
BseLI	CCNNNNNNNGG	8 cut(s)	38, 293, 592, 1283, 1577, 1637, 1801, 1888
BseMI	GCAATG	2 cut(s)	401, 637
BseMII	CTCAG	8 cut(s)	20, 260, 507, 1214, 1605, 1770, 1791, 1859
BseNI	ACTGG	2 cut(s)	358, 711
BseRI	GAGGAG	1 cut(s)	1236
BseSI	GKGCMC	1 cut(s)	265
BseXI	GCAGC	7 cut(s)	148, 241, 499, 775, 1498, 1519, 1772
BshFI	GGCC	5 cut(s)	165, 1219, 1312, 1378, 1437
BshTI	ACCGGT	1 cut(s)	38
BsiHKAI	GWGCWC	4 cut(s)	903, 1108, 1276, 1390
BsiHKCI	CYCGRG	2 cut(s)	1101, 1817
BsiSI	CCGG	4 cut(s)	32, 39, 66, 1826
BslFI	GGGAC	5 cut(s)	206, 341, 561, 1539, 1653
BslI	CCNNNNNNNGG	8 cut(s)	38, 293, 592, 1283, 1577, 1637, 1801, 1888
BsmAI	GTCTC	1 cut(s)	178
BsmBI	CGTCTC	1 cut(s)	178
BsmFI	GGGAC	5 cut(s)	206, 341, 561, 1539, 1653
BsnI	GGCC	5 cut(s)	165, 1219, 1312, 1378, 1437
BsoBI	CYCGRG	2 cut(s)	1101, 1817
Bsp1286I	GDGCHC	6 cut(s)	265, 903, 1108, 1276, 1390, 1752
Bsp143I	GATC	5 cut(s)	109, 145, 209, 1627, 1906
BspACI	CCGC	1 cut(s)	1505
BspANI	GGCC	5 cut(s)	165, 1219, 1312, 1378, 1437
BspCNI	CTCAG	8 cut(s)	19, 259, 508, 1213, 1604, 1769, 1792, 1860
BspLI	GGNNCC	8 cut(s)	30, 329, 330, 577, 703, 1233, 1245, 1749
BspMAI	CTGCAG	1 cut(s)	1636
BspMI	ACCTGC	1 cut(s)	1454
BspPI	GGATC	2 cut(s)	117, 1622
BspTI	CTTAAG	1 cut(s)	986
BsrDI	GCAATG	2 cut(s)	401, 637
BsrFI	RCCGGY	2 cut(s)	38, 65
BsrI	ACTGG	2 cut(s)	358, 711
BssAI	RCCGGY	2 cut(s)	38, 65
BssECI	CCNNGG	4 cut(s)	474, 1444, 1520, 1764
BssMI	GATC	5 cut(s)	109, 145, 209, 1627, 1906
BssNI	GRCGYC	1 cut(s)	51
BssT1I	CCWWGG	3 cut(s)	474, 1520, 1764
Bst2UI	CCWGG	7 cut(s)	167, 1269, 1278, 1368, 1380, 1446, 1548
Bst4CI	ACNGT	2 cut(s)	124, 1015
Bst6I	CTCTTC	2 cut(s)	327, 1170
BstACI	GRCGYC	1 cut(s)	51
BstAFI	CTTAAG	1 cut(s)	986
BstAPI	GCANNNNNTGC	3 cut(s)	1363, 1492, 1847
BstBAI	YACGTR	2 cut(s)	571, 640
BstC8I	GCNNGC	6 cut(s)	545, 1142, 1197, 1335, 1616, 1778
BstDEI	CTNAG	8 cut(s)	6, 246, 516, 1200, 1591, 1756, 1800, 1868
BstEII	GGTNACC	2 cut(s)	34, 1346
BstF5I	GGATG	6 cut(s)	256, 463, 607, 736, 967, 1670
BstKTI	GATC	5 cut(s)	112, 148, 212, 1630, 1909
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	5 cut(s)	109, 145, 209, 1627, 1906
BstNI	CCWGG	7 cut(s)	167, 1269, 1278, 1368, 1380, 1446, 1548
BstNSI	RCATGY	3 cut(s)	547, 1618, 1780
BstPI	GGTNACC	2 cut(s)	34, 1346
BstSCI	CCNGG	7 cut(s)	165, 1267, 1276, 1366, 1378, 1444, 1546
BstSFI	CTRYAG	3 cut(s)	663, 717, 1632
BstSLI	GKGCMC	1 cut(s)	265
BstSNI	TACGTA	1 cut(s)	571
BstV1I	GCAGC	7 cut(s)	148, 241, 499, 775, 1498, 1519, 1772
BstV2I	GAAGAC	2 cut(s)	623, 869
BstX2I	RGATCY	2 cut(s)	109, 209
BstYI	RGATCY	2 cut(s)	109, 209
Bsu36I	CCTNAGG	2 cut(s)	246, 1868
BsuRI	GGCC	5 cut(s)	165, 1219, 1312, 1378, 1437
BtrI	CACGTC	3 cut(s)	93, 1457, 1643
BtsCI	GGATG	6 cut(s)	256, 463, 607, 736, 967, 1670
BtsIMutI	CAGTG	4 cut(s)	287, 718, 1245, 1496
BveI	ACCTGC	1 cut(s)	1454
Cac8I	GCNNGC	6 cut(s)	545, 1142, 1197, 1335, 1616, 1778
CaiI	CAGNNNCTG	1 cut(s)	1469
Cfr10I	RCCGGY	2 cut(s)	38, 65
Cfr13I	GGNCC	9 cut(s)	41, 328, 575, 701, 1310, 1417, 1466, 1792, 1864
CpoI	CGGWCCG	1 cut(s)	41
CseI	GACGC	1 cut(s)	40
CsiI	ACCWGGT	1 cut(s)	1546
Csp6I	GTAC	5 cut(s)	272, 351, 568, 1011, 1261
CspAI	ACCGGT	1 cut(s)	38
CspCI	CAANNNNNGTGG	2 cut(s)	49, 84
CspI	CGGWCCG	1 cut(s)	41
CviAII	CATG	8 cut(s)	407, 544, 698, 907, 1513, 1606, 1615, 1777
CviQI	GTAC	5 cut(s)	272, 351, 568, 1011, 1261
DdeI	CTNAG	8 cut(s)	6, 246, 516, 1200, 1591, 1756, 1800, 1868
DpnI	GATC	5 cut(s)	111, 147, 211, 1629, 1908
DpnII	GATC	5 cut(s)	109, 145, 209, 1627, 1906
EaeI	YGGCCR	1 cut(s)	163
Eam1104I	CTCTTC	2 cut(s)	327, 1170
EarI	CTCTTC	2 cut(s)	327, 1170
Ecl136II	GAGCTC	1 cut(s)	1106
Eco105I	TACGTA	1 cut(s)	571
Eco130I	CCWWGG	3 cut(s)	474, 1520, 1764
Eco147I	AGGCCT	2 cut(s)	1219, 1378
Eco24I	GRGCYC	2 cut(s)	1108, 1752
Eco47I	GGWCC	8 cut(s)	41, 328, 575, 701, 1417, 1466, 1792, 1864
Eco53kI	GAGCTC	1 cut(s)	1106
Eco57I	CTGAAG	5 cut(s)	905, 1065, 1110, 1221, 1856
Eco81I	CCTNAGG	2 cut(s)	246, 1868
Eco88I	CYCGRG	2 cut(s)	1101, 1817
Eco91I	GGTNACC	2 cut(s)	34, 1346
EcoICRI	GAGCTC	1 cut(s)	1106
EcoO109I	RGGNCCY	5 cut(s)	328, 575, 1310, 1466, 1864
EcoO65I	GGTNACC	2 cut(s)	34, 1346
EcoRII	CCWGG	7 cut(s)	165, 1267, 1276, 1366, 1378, 1444, 1546
EcoT14I	CCWWGG	3 cut(s)	474, 1520, 1764
EcoT38I	GRGCYC	2 cut(s)	1108, 1752
ErhI	CCWWGG	3 cut(s)	474, 1520, 1764
Esp3I	CGTCTC	1 cut(s)	178
FaeI	CATG	8 cut(s)	410, 547, 701, 910, 1516, 1609, 1618, 1780
FaqI	GGGAC	5 cut(s)	206, 341, 561, 1539, 1653
FatI	CATG	8 cut(s)	406, 543, 697, 906, 1512, 1605, 1614, 1776
FauNDI	CATATG	1 cut(s)	1600
FbaI	TGATCA	1 cut(s)	1906
FblI	GTMKAC	2 cut(s)	636, 1453
Fnu4HI	GCNGC	8 cut(s)	137, 255, 513, 789, 1487, 1505, 1508, 1761
FokI	GGATG	6 cut(s)	263, 470, 614, 743, 974, 1657
FriOI	GRGCYC	2 cut(s)	1108, 1752
Fsp4HI	GCNGC	8 cut(s)	137, 255, 513, 789, 1487, 1505, 1508, 1761
FspBI	CTAG	3 cut(s)	266, 918, 1283
GluI	GCNGC	8 cut(s)	137, 255, 513, 789, 1487, 1505, 1508, 1761
GsuI	CTGGAG	4 cut(s)	134, 1260, 1401, 1805
HaeIII	GGCC	5 cut(s)	165, 1219, 1312, 1378, 1437
HapII	CCGG	4 cut(s)	32, 39, 66, 1826
HgaI	GACGC	1 cut(s)	40
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	8 cut(s)	410, 547, 701, 910, 1516, 1609, 1618, 1780
HincII	GTYRAC	4 cut(s)	61, 766, 1454, 1894
HindII	GTYRAC	4 cut(s)	61, 766, 1454, 1894
HindIII	AAGCTT	3 cut(s)	1095, 1719, 1937
HinfI	GANTC	7 cut(s)	10, 131, 373, 656, 1516, 1754, 1820
HpaI	GTTAAC	1 cut(s)	1894
HpaII	CCGG	4 cut(s)	32, 39, 66, 1826
HphI	GGTGA	5 cut(s)	46, 704, 746, 1727, 1815
Hpy188I	TCNGA	9 cut(s)	9, 45, 308, 655, 810, 1003, 1090, 1836, 1929
Hpy99I	CGWCG	4 cut(s)	56, 97, 107, 1458
HpyAV	CCTTC	8 cut(s)	880, 904, 1040, 1087, 1165, 1176, 1245, 1831
HpyCH4III	ACNGT	2 cut(s)	124, 1015
HpyCH4IV	ACGT	7 cut(s)	92, 102, 570, 639, 1456, 1528, 1642
HpyF3I	CTNAG	8 cut(s)	6, 246, 516, 1200, 1591, 1756, 1800, 1868
HpySE526I	ACGT	7 cut(s)	92, 102, 570, 639, 1456, 1528, 1642
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	8 cut(s)	410, 547, 701, 910, 1516, 1609, 1618, 1780
KflI	GGGWCCC	1 cut(s)	328
Ksp22I	TGATCA	1 cut(s)	1906
KspAI	GTTAAC	1 cut(s)	1894
Kzo9I	GATC	5 cut(s)	109, 145, 209, 1627, 1906
LmnI	GCTCC	8 cut(s)	34, 115, 1237, 1249, 1279, 1393, 1573, 1747
Lsp1109I	GCAGC	7 cut(s)	148, 241, 499, 775, 1498, 1519, 1772
LweI	GCATC	8 cut(s)	31, 241, 448, 775, 1491, 1698, 1729, 1925
MabI	ACCWGGT	1 cut(s)	1546
MaeI	CTAG	3 cut(s)	266, 918, 1283
MaeII	ACGT	7 cut(s)	92, 102, 570, 639, 1456, 1528, 1642
MaeIII	GTNAC	8 cut(s)	34, 124, 1015, 1037, 1346, 1768, 1821, 1876
MalI	GATC	5 cut(s)	111, 147, 211, 1629, 1908
MboI	GATC	5 cut(s)	109, 145, 209, 1627, 1906
MboII	GAAGA	9 cut(s)	314, 518, 628, 691, 871, 874, 1103, 1187, 1706
MflI	RGATCY	2 cut(s)	109, 209
MhlI	GDGCHC	6 cut(s)	265, 903, 1108, 1276, 1390, 1752
MlyI	GAGTC	3 cut(s)	125, 1748, 1829
MmeI	TCCRAC	2 cut(s)	1340, 1444
MseI	TTAA	6 cut(s)	231, 536, 551, 987, 1893, 1948
MslI	CAYNNNNRTG	1 cut(s)	1619
MspCI	CTTAAG	1 cut(s)	986
MspI	CCGG	4 cut(s)	32, 39, 66, 1826
MspR9I	CCNGG	7 cut(s)	167, 1269, 1278, 1368, 1380, 1446, 1548
MvaI	CCWGG	7 cut(s)	167, 1269, 1278, 1368, 1380, 1446, 1548
NdeI	CATATG	1 cut(s)	1600
NdeII	GATC	5 cut(s)	109, 145, 209, 1627, 1906
NlaIII	CATG	8 cut(s)	410, 547, 701, 910, 1516, 1609, 1618, 1780
NlaIV	GGNNCC	8 cut(s)	30, 329, 330, 577, 703, 1233, 1245, 1749
NmuCI	GTSAC	5 cut(s)	34, 124, 1015, 1037, 1821
NspI	RCATGY	3 cut(s)	547, 1618, 1780
PaeI	GCATGC	3 cut(s)	547, 1618, 1780
PaeR7I	CTCGAG	2 cut(s)	1101, 1817
PceI	AGGCCT	2 cut(s)	1219, 1378
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PfeI	GAWTC	4 cut(s)	10, 373, 656, 1516
PflMI	CCANNNNNTGG	2 cut(s)	293, 1577
PinAI	ACCGGT	1 cut(s)	38
PkrI	GCNGC	8 cut(s)	138, 256, 514, 790, 1488, 1506, 1509, 1762
PleI	GAGTC	3 cut(s)	125, 1748, 1828
PpsI	GAGTC	3 cut(s)	125, 1748, 1828
Ppu21I	YACGTR	2 cut(s)	571, 640
PpuMI	RGGWCCY	4 cut(s)	328, 575, 1466, 1864
Psp124BI	GAGCTC	1 cut(s)	1108
Psp5II	RGGWCCY	4 cut(s)	328, 575, 1466, 1864
Psp6I	CCWGG	7 cut(s)	165, 1267, 1276, 1366, 1378, 1444, 1546
PspEI	GGTNACC	2 cut(s)	34, 1346
PspGI	CCWGG	7 cut(s)	165, 1267, 1276, 1366, 1378, 1444, 1546
PspN4I	GGNNCC	8 cut(s)	30, 329, 330, 577, 703, 1233, 1245, 1749
PspPI	GGNCC	9 cut(s)	41, 328, 575, 701, 1310, 1417, 1466, 1792, 1864
PspPPI	RGGWCCY	4 cut(s)	328, 575, 1466, 1864
PspXI	VCTCGAGB	1 cut(s)	1817
PstI	CTGCAG	1 cut(s)	1636
PstNI	CAGNNNCTG	1 cut(s)	1469
PsuI	RGATCY	2 cut(s)	109, 209
RsaI	GTAC	5 cut(s)	273, 352, 569, 1012, 1262
RsaNI	GTAC	5 cut(s)	272, 351, 568, 1011, 1261
RseI	CAYNNNNRTG	1 cut(s)	1619
Rsr2I	CGGWCCG	1 cut(s)	41
RsrII	CGGWCCG	1 cut(s)	41
SacI	GAGCTC	1 cut(s)	1108
SalI	GTCGAC	1 cut(s)	1452
SaqAI	TTAA	6 cut(s)	231, 536, 551, 987, 1893, 1948
SatI	GCNGC	8 cut(s)	137, 255, 513, 789, 1487, 1505, 1508, 1761
Sau3AI	GATC	5 cut(s)	109, 145, 209, 1627, 1906
Sau96I	GGNCC	9 cut(s)	41, 328, 575, 701, 1310, 1417, 1466, 1792, 1864
SbfI	CCTGCAGG	1 cut(s)	1636
ScaI	AGTACT	1 cut(s)	273
SchI	GAGTC	3 cut(s)	125, 1748, 1829
ScrFI	CCNGG	7 cut(s)	167, 1269, 1278, 1368, 1380, 1446, 1548
SdaI	CCTGCAGG	1 cut(s)	1636
SduI	GDGCHC	6 cut(s)	265, 903, 1108, 1276, 1390, 1752
SexAI	ACCWGGT	1 cut(s)	1546
SfaNI	GCATC	8 cut(s)	31, 241, 448, 775, 1491, 1698, 1729, 1925
SfcI	CTRYAG	3 cut(s)	663, 717, 1632
Sfr274I	CTCGAG	2 cut(s)	1101, 1817
SgrAI	CRCCGGYG	1 cut(s)	65
SinI	GGWCC	8 cut(s)	41, 328, 575, 701, 1417, 1466, 1792, 1864
SlaI	CTCGAG	2 cut(s)	1101, 1817
SmiMI	CAYNNNNRTG	1 cut(s)	1619
SmlI	CTYRAG	3 cut(s)	986, 1101, 1817
SmoI	CTYRAG	3 cut(s)	986, 1101, 1817
SnaBI	TACGTA	1 cut(s)	571
SphI	GCATGC	3 cut(s)	547, 1618, 1780
Sse8387I	CCTGCAGG	1 cut(s)	1636
SseBI	AGGCCT	2 cut(s)	1219, 1378
SsiI	CCGC	1 cut(s)	1505
SspI	AATATT	2 cut(s)	361, 996
SspMI	CTAG	3 cut(s)	266, 918, 1283
SstI	GAGCTC	1 cut(s)	1108
StuI	AGGCCT	2 cut(s)	1219, 1378
StyD4I	CCNGG	7 cut(s)	165, 1267, 1276, 1366, 1378, 1444, 1546
StyI	CCWWGG	3 cut(s)	474, 1520, 1764
TaaI	ACNGT	2 cut(s)	124, 1015
TaiI	ACGT	7 cut(s)	95, 105, 573, 642, 1459, 1531, 1645
TaqI	TCGA	4 cut(s)	1082, 1102, 1453, 1818
TaqII	GACCGA	1 cut(s)	143
TatI	WGTACW	1 cut(s)	271
TauI	GCSGC	1 cut(s)	1507
TfiI	GAWTC	4 cut(s)	10, 373, 656, 1516
Tru1I	TTAA	6 cut(s)	231, 536, 551, 987, 1893, 1948
Tru9I	TTAA	6 cut(s)	231, 536, 551, 987, 1893, 1948
TscAI	CASTG	4 cut(s)	294, 718, 1245, 1503
TseFI	GTSAC	5 cut(s)	34, 124, 1015, 1037, 1821
TseI	GCWGC	7 cut(s)	136, 254, 512, 788, 1486, 1507, 1760
Tsp45I	GTSAC	5 cut(s)	34, 124, 1015, 1037, 1821
TspDTI	ATGAA	3 cut(s)	923, 1133, 1659
TspGWI	ACGGA	5 cut(s)	166, 470, 575, 1127, 1183
TspRI	CASTG	4 cut(s)	294, 718, 1245, 1503
Van91I	CCANNNNNTGG	2 cut(s)	293, 1577
Vha464I	CTTAAG	1 cut(s)	986
VpaK11BI	GGWCC	8 cut(s)	41, 328, 575, 701, 1417, 1466, 1792, 1864
XapI	RAATTY	6 cut(s)	309, 623, 684, 893, 926, 940
XceI	RCATGY	3 cut(s)	547, 1618, 1780
XhoI	CTCGAG	2 cut(s)	1101, 1817
XmiI	GTMKAC	2 cut(s)	636, 1453
XspI	CTAG	3 cut(s)	266, 918, 1283
ZrmI	AGTACT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.