Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002657

Physical Location & Seq

Genomic Coordinates Forward (+)

5407668 .. 5411255

Gene Structure 3588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1079100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1950 bp

ATGGCTCAGATTCAAGTTCAGCACCACCAGCAGCCTCCTGTGAGCGGCCCGAACAGCGTGGCGGCGAACGCCGGCGGTGCCCCCCAGCAGTTCGTTTCGACGTCGCTGTACGTTGGGGATCTTGACCAGAATGTTACCGACTCGCAGCTGTACGATCTGTTCAACCAGGTCGGTCAGGTCGTGTCGGTTAGGGTCTGCAGGGACTTGAGCACTCGCCGATCTCTCGGCTATGGTTACGTCAACTATAGCGGTCCTCAGGATGCTGCGAGGGCACTGGAAGTTCTGAACTTCACTCCACTGAATAACAAATCAATCAGGATTATGTATTCGCACCGGGACCCTAGTATTAGAAAGAGTGGAACCGGAAACATATTTATCAAGAATCTGGACAAGGCAATTGACCACAAAGCATTGCATGAGACATTTTCTTCGTTTGGAAATATTCTTTCTTGCAAGATAGCCACTGATGCCACTGGCCAGTCAAAGGGCTATGGTTTTGTGCAATTTGATAGTGAGGAAGCTGCTCAGAGTGCAATAGATAAGTTAAATGGGATGCTGCTTAATGATAAGCCAGTATTTGTAGGACAATTTCTCCGCAAGCAGGAGAGAGACGGAAATTGGAATAAGACAAAATTTAACAATGTCTACGTCAAGAATGTATCTGAATCTACAACAGAGGATGAGTTGAGGAACATTTTTGGCGAACATGGACAAATTACCAGTGTTGTAGTGATGAGGGATGGGGAAGGCAAATCAAGGTGTTTTGGTTTTGTCAACTTTGAGGATCCAGAAGCTGCTGCTAAAGCTGTTGAAGCTTTGAATGGAAAGAAGATCGATGAGAAGGAGTGGTATGTTGGGAAAGCTCAGAAGAAGTACGAAAGAGAGCTTGAATTGAAGGAGAGATTTGAGCAGAGCATGAAGGAAGCCAGCGATAAGTTTCAGGGTGTCAATTTGTATATCAAGAACTTGGATGACAGCATCAGTGATGAAAAACTCAAGGAATTATTCTCGGAGTACGGTACAGTTAGTTCATGCAAGGTTATGCGTGATCCTGATGGAAACAGCAGAGGTTCTGGTTTCGTTGCCTTTTCAACTGCTGAAGAAGCTTCTCGAGCTCTTGCTGAGATGAATGGCAAAATGGTTGTTAGCAAGCCTCTGTATGTTGCACTTGCGCAAAGGAAAGAAGAAAGAAGAGCAAGGCTACAGGCTCAGTTTTCGCAAATGAGGCCAGTTGCTATGGCACCTTCAGTGGCTCCACGTGGTATGCCAATGTACCCTCCTGGTGCTCCGGGTCTAGGGCAACAATTTATGTACGGGCAAGCACCTCCAGCGATAATTCCTCCACAAGCTGGATTTGGTTACCAACAGCAGCTTGTGCCTGGATTAAGGCCTGGTGGTGGACCAATGCCAAACTTCTTTGTTCCAATGGTCCAGCAGGGTCAGCAGGGCCAACGCCCAGGAGGCCGACGTGGTGCAGGTCCAGTGCAGCCAAACCAACAGCCTGTGCCAATGATGCAGCAGCATATGCTGCCTAGGGGACGTGTGTACCGCTATCCACCTGGTCGCAACATGCAGGAAGTTCCATTTTCTGGAGTCGGCAGTGGTATGCTTCCAGTCCCATATGACATGGGTGCCATTCCTATGCGTGATGCTGCAGGTGGGCAGGGTGTTCCAGCTTTGGCCACTGCCCTTGCAAATGCCTCAACTGAACAGCAAAGGACGATGCTTGGTGAAGCCTTATATCCCCTCGTTGACCAGCTGGAGCATGAGTCGGCAGCCAAGGTGACAGGCATGCTTTTGGAGATGGACCAGACTGAAGTTTTGCATTTGCTCGAGTCACCAGAGGCTCTAAAGGCGAAGGTCGCAGAGGCCATGGATGTTCTGAGGAATGTTGCCCAACAGCAGGCTAACAGCAGCGCCGACCAACTGTCTTCATTGTCTCTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006412 GO:0006413 GO:0006417 GO:0006446 GO:0006518 GO:0006807 GO:0006950 GO:0006970 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009628 GO:0009651 GO:0009889 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031329 GO:0032268 GO:0034248 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0060211 GO:0060255 GO:0061013 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:1900151 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1903311 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

PABP RRM_1

Protein Analysis

650

Amino Acids

71.17

Weight (kDa)

6.79

Isoelectric Point (pI)

40.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	36 - 106	2.2e-18	RNA recognition motif
RRM_1	PF00076	124 - 191	8.1e-22	RNA recognition motif
RRM_1	PF00076	215 - 283	5e-23	RNA recognition motif
RRM_1	PF00076	318 - 386	2e-20	RNA recognition motif
MLLE	PF00658	563 - 628	3.5e-28	MLLE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49760 AT1G49760 AT4G34110
fragaria_vesca	FvH4_2g05720 FvH4_2g05720 FvH4_2g05720 FvH4_2g05720 FvH4_2g34040 FvH4_2g34040 FvH4_2g34040 FvH4_6g37220
malus_domestica	MD00G1138300.v1.1 MD05G1085100.v1.1 MD08G1096400.v1.1 MD15G1079100.v1.1
prunus_persica	Prupe.1G432200_v2.0.a1 Prupe.1G432200_v2.0.a1 Prupe.8G129400_v2.0.a1 Prupe.8G129400_v2.0.a1
pyrus_communis	pycom05g08430 pycom08g07840 pycom10g07970 pycom15g07370
rosa_chinensis	RchiOBHm_Chr6g0256591 RchiOBHm_Chr6g0308331
rosa_laevigata	RLG00000010649 RLG00000014752
rosa_multiflora	Rmu_sc0003012.1_g000007
rosa_roxburghii	Rroxscaffold_7G00160250 Rroxscaffold_7G00209190
rosa_rugosa	Rorug05G0564800 Rorug06G0366200 Rorug06G0366200
rosa_samantha	Rh6AG082800 Rh6AG475400 Rh6BG077400 Rh6CG072000 Rh6DG477300
rosa_wichuraiana	Rw6G007450 Rw6G041440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1646
AatII	GACGTC	1 cut(s)	104
Acc16I	TGCGCA	1 cut(s)	1173
Acc36I	ACCTGC	2 cut(s)	1466, 1646
AccB1I	GGYRCC	3 cut(s)	77, 1240, 1631
AccB7I	CCANNNNNTGG	2 cut(s)	1349, 1589
AccBSI	CCGCTC	1 cut(s)	45
AccI	GTMKAC	1 cut(s)	645
AciI	CCGC	6 cut(s)	45, 62, 75, 249, 595, 1549
AclWI	GGATC	4 cut(s)	126, 779, 792, 1043
AcoI	YGGCCR	2 cut(s)	475, 1680
AcsI	RAATTY	1 cut(s)	632
AcuI	CTGAAG	3 cut(s)	1119, 1230, 1836
AcvI	CACGTG	1 cut(s)	1259
AcyI	GRCGYC	1 cut(s)	101
AfaI	GTAC	8 cut(s)	110, 152, 875, 1016, 1021, 1274, 1313, 1547
AfiI	CCNNNNNNNGG	8 cut(s)	44, 484, 601, 1295, 1349, 1397, 1589, 1903
AflIII	ACRYGT	1 cut(s)	1540
AgsI	TTSAA	8 cut(s)	14, 163, 812, 820, 890, 895, 1092, 1946
AhdI	GACNNNNNGTC	1 cut(s)	1927
AjiI	CACGTC	2 cut(s)	1469, 1541
AjnI	CCWGG	6 cut(s)	165, 1279, 1378, 1390, 1456, 1558
Alw21I	GWGCWC	3 cut(s)	212, 1117, 1288
Alw26I	GTCTC	3 cut(s)	413, 603, 1944
AlwI	GGATC	4 cut(s)	126, 779, 792, 1043
AlwNI	CAGNNNCTG	1 cut(s)	794
Ama87I	CYCGRG	2 cut(s)	1110, 1832
AoxI	GGCC	8 cut(s)	46, 475, 1226, 1388, 1447, 1462, 1680, 1869
ApoI	RAATTY	1 cut(s)	632
ArsI	GACNNNNNNTTYG	4 cut(s)	412, 444, 1804, 1836
AspA2I	CCTAGG	1 cut(s)	1532
AspLEI	GCGC	2 cut(s)	1174, 1919
AspS9I	GGNCC	8 cut(s)	47, 251, 337, 1400, 1429, 1447, 1478, 1807
AsuC2I	CCSGG	2 cut(s)	335, 1290
AsuHPI	GGTGA	3 cut(s)	1742, 1795, 1830
AvaI	CYCGRG	2 cut(s)	1110, 1832
AvaII	GGWCC	6 cut(s)	251, 337, 1400, 1429, 1478, 1807
AvrII	CCTAGG	1 cut(s)	1532
AxyI	CCTNAGG	1 cut(s)	255
BaeGI	GKGCMC	2 cut(s)	82, 274
BaeI	ACNNNNGTAYC	2 cut(s)	1529, 1562
BalI	TGGCCA	2 cut(s)	477, 1682
BamHI	GGATCC	1 cut(s)	784
BanI	GGYRCC	3 cut(s)	77, 1240, 1631
BanII	GRGCYC	1 cut(s)	1117
BbrPI	CACGTG	1 cut(s)	1259
BbsI	GAAGAC	1 cut(s)	1923
Bbv12I	GWGCWC	3 cut(s)	212, 1117, 1288
BccI	CCATC	3 cut(s)	734, 1049, 1798
BciT130I	CCWGG	6 cut(s)	167, 1281, 1380, 1392, 1458, 1560
BcnI	CCSGG	2 cut(s)	335, 1290
BcoDI	GTCTC	3 cut(s)	413, 603, 1944
BfaI	CTAG	3 cut(s)	342, 1295, 1533
BfmI	CTRYAG	4 cut(s)	196, 244, 1202, 1653
BfoI	RGCGCY	1 cut(s)	1920
BfuAI	ACCTGC	2 cut(s)	1466, 1646
BglI	GCCNNNNNGGC	1 cut(s)	1461
BlnI	CCTAGG	1 cut(s)	1532
Bme1390I	CCNGG	8 cut(s)	167, 335, 1281, 1290, 1380, 1392, 1458, 1560
Bme18I	GGWCC	6 cut(s)	251, 337, 1400, 1429, 1478, 1807
BmeRI	GACNNNNNGTC	1 cut(s)	1927
BmeT110I	CYCGRG	2 cut(s)	1110, 1832
BmgBI	CACGTC	2 cut(s)	1469, 1541
BmgT120I	GGNCC	8 cut(s)	47, 251, 337, 1400, 1429, 1447, 1478, 1807
BmiI	GGNNCC	8 cut(s)	79, 338, 339, 361, 786, 1242, 1254, 1633
BmrFI	CCNGG	8 cut(s)	167, 335, 1281, 1290, 1380, 1392, 1458, 1560
BmsI	GCATC	7 cut(s)	250, 457, 543, 987, 1503, 1639, 1713
BpiI	GAAGAC	1 cut(s)	1923
BpmI	CTGGAG	3 cut(s)	1311, 1611, 1781
BpuEI	CTTGAG	2 cut(s)	226, 980
BpuMI	CCSGG	2 cut(s)	335, 1290
Bsa29I	ATCGAT	1 cut(s)	834
BsaAI	YACGTR	1 cut(s)	1259
BsaHI	GRCGYC	1 cut(s)	101
BsaJI	CCNNGG	4 cut(s)	1456, 1532, 1779, 1872
BsaWI	WCCGGW	1 cut(s)	362
BsaXI	ACNNNNNCTCC	4 cut(s)	576, 606, 1754, 1784
Bsc4I	CCNNNNNNNGG	8 cut(s)	44, 484, 601, 1295, 1349, 1397, 1589, 1903
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	8 cut(s)	279, 478, 478, 572, 720, 1229, 1481, 1613
Bse21I	CCTNAGG	1 cut(s)	255
Bse3DI	GCAATG	1 cut(s)	410
BseBI	CCWGG	6 cut(s)	167, 1281, 1380, 1392, 1458, 1560
BseCI	ATCGAT	1 cut(s)	834
BseDI	CCNNGG	4 cut(s)	1456, 1532, 1779, 1872
BseGI	GGATG	6 cut(s)	265, 558, 685, 745, 976, 1882
BseLI	CCNNNNNNNGG	8 cut(s)	44, 484, 601, 1295, 1349, 1397, 1589, 1903
BseMI	GCAATG	1 cut(s)	410
BseMII	CTCAG	7 cut(s)	20, 269, 539, 878, 1113, 1223, 1874
BseNI	ACTGG	8 cut(s)	279, 478, 478, 572, 720, 1229, 1481, 1613
BseSI	GKGCMC	2 cut(s)	82, 274
BseYI	CCCAGC	1 cut(s)	84
BsgI	GTGCAG	2 cut(s)	1494, 1505
BshFI	GGCC	8 cut(s)	48, 477, 1228, 1390, 1449, 1464, 1682, 1871
BshNI	GGYRCC	3 cut(s)	77, 1240, 1631
BshVI	ATCGAT	1 cut(s)	834
BsiHKAI	GWGCWC	3 cut(s)	212, 1117, 1288
BsiHKCI	CYCGRG	2 cut(s)	1110, 1832
BsiSI	CCGG	4 cut(s)	72, 334, 363, 1289
BslFI	GGGAC	4 cut(s)	215, 350, 1551, 1601
BslI	CCNNNNNNNGG	8 cut(s)	44, 484, 601, 1295, 1349, 1397, 1589, 1903
BsmAI	GTCTC	3 cut(s)	413, 603, 1944
BsmBI	CGTCTC	1 cut(s)	603
BsmFI	GGGAC	4 cut(s)	215, 350, 1551, 1601
BsnI	GGCC	8 cut(s)	48, 477, 1228, 1390, 1449, 1464, 1682, 1871
BsoBI	CYCGRG	2 cut(s)	1110, 1832
Bsp1286I	GDGCHC	5 cut(s)	82, 212, 274, 1117, 1288
Bsp143I	GATC	6 cut(s)	118, 154, 218, 784, 831, 1048
Bsp19I	CCATGG	1 cut(s)	1872
BspACI	CCGC	6 cut(s)	45, 62, 75, 249, 595, 1549
BspANI	GGCC	8 cut(s)	48, 477, 1228, 1390, 1449, 1464, 1682, 1871
BspCNI	CTCAG	7 cut(s)	19, 268, 538, 877, 1114, 1222, 1875
BspDI	ATCGAT	1 cut(s)	834
BspLI	GGNNCC	8 cut(s)	79, 338, 339, 361, 786, 1242, 1254, 1633
BspMAI	CTGCAG	2 cut(s)	200, 1657
BspMI	ACCTGC	2 cut(s)	1466, 1646
BspPI	GGATC	4 cut(s)	126, 779, 792, 1043
BspQI	GCTCTTC	1 cut(s)	1186
BspT107I	GGYRCC	3 cut(s)	77, 1240, 1631
BsrBI	CCGCTC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	410
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	8 cut(s)	279, 478, 478, 572, 720, 1229, 1481, 1613
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	4 cut(s)	1456, 1532, 1779, 1872
BssMI	GATC	6 cut(s)	118, 154, 218, 784, 831, 1048
BssNI	GRCGYC	1 cut(s)	101
BssT1I	CCWWGG	3 cut(s)	1532, 1779, 1872
Bst2UI	CCWGG	6 cut(s)	167, 1281, 1380, 1392, 1458, 1560
Bst4CI	ACNGT	3 cut(s)	1019, 1024, 1929
Bst6I	CTCTTC	1 cut(s)	1186
BstACI	GRCGYC	1 cut(s)	101
BstAPI	GCANNNNNTGC	3 cut(s)	1375, 1525, 1528
BstBAI	YACGTR	1 cut(s)	1259
BstC8I	GCNNGC	7 cut(s)	73, 599, 928, 1151, 1320, 1793, 1905
BstDEI	CTNAG	7 cut(s)	6, 255, 525, 864, 1122, 1209, 1883
BstDSI	CCRYGG	1 cut(s)	1872
BstEII	GGTNACC	1 cut(s)	1358
BstF5I	GGATG	6 cut(s)	265, 558, 685, 745, 976, 1882
BstH2I	RGCGCY	1 cut(s)	1920
BstHHI	GCGC	2 cut(s)	1174, 1919
BstKTI	GATC	6 cut(s)	121, 157, 221, 787, 834, 1051
BstMAI	GTCTC	3 cut(s)	413, 603, 1944
BstMBI	GATC	6 cut(s)	118, 154, 218, 784, 831, 1048
BstNI	CCWGG	6 cut(s)	167, 1281, 1380, 1392, 1458, 1560
BstNSI	RCATGY	2 cut(s)	1573, 1795
BstPI	GGTNACC	1 cut(s)	1358
BstSCI	CCNGG	8 cut(s)	165, 333, 1279, 1288, 1378, 1390, 1456, 1558
BstSFI	CTRYAG	4 cut(s)	196, 244, 1202, 1653
BstSLI	GKGCMC	2 cut(s)	82, 274
BstV2I	GAAGAC	1 cut(s)	1923
BstX2I	RGATCY	2 cut(s)	118, 784
BstYI	RGATCY	2 cut(s)	118, 784
Bsu15I	ATCGAT	1 cut(s)	834
Bsu36I	CCTNAGG	1 cut(s)	255
BsuRI	GGCC	8 cut(s)	48, 477, 1228, 1390, 1449, 1464, 1682, 1871
BsuTUI	ATCGAT	1 cut(s)	834
BtgI	CCRYGG	1 cut(s)	1872
BtrI	CACGTC	2 cut(s)	1469, 1541
BtsCI	GGATG	6 cut(s)	265, 558, 685, 745, 976, 1882
BtsI	GCAGTG	2 cut(s)	1606, 1683
BveI	ACCTGC	2 cut(s)	1466, 1646
Cac8I	GCNNGC	7 cut(s)	73, 599, 928, 1151, 1320, 1793, 1905
CaiI	CAGNNNCTG	1 cut(s)	794
CfoI	GCGC	2 cut(s)	1174, 1919
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	8 cut(s)	47, 251, 337, 1400, 1429, 1447, 1478, 1807
ClaI	ATCGAT	1 cut(s)	834
CsiI	ACCWGGT	2 cut(s)	165, 1558
Csp6I	GTAC	8 cut(s)	109, 151, 874, 1015, 1020, 1273, 1312, 1546
CspCI	CAANNNNNGTGG	2 cut(s)	1672, 1707
CviAII	CATG	9 cut(s)	416, 707, 916, 1032, 1570, 1627, 1766, 1792, 1873
CviQI	GTAC	8 cut(s)	109, 151, 874, 1015, 1020, 1273, 1312, 1546
DdeI	CTNAG	7 cut(s)	6, 255, 525, 864, 1122, 1209, 1883
DpnI	GATC	6 cut(s)	120, 156, 220, 786, 833, 1050
DpnII	GATC	6 cut(s)	118, 154, 218, 784, 831, 1048
DriI	GACNNNNNGTC	1 cut(s)	1927
EaeI	YGGCCR	2 cut(s)	475, 1680
Eam1104I	CTCTTC	1 cut(s)	1186
Eam1105I	GACNNNNNGTC	1 cut(s)	1927
EarI	CTCTTC	1 cut(s)	1186
Ecl136II	GAGCTC	1 cut(s)	1115
Eco130I	CCWWGG	3 cut(s)	1532, 1779, 1872
Eco147I	AGGCCT	1 cut(s)	1390
Eco24I	GRGCYC	1 cut(s)	1117
Eco47I	GGWCC	6 cut(s)	251, 337, 1400, 1429, 1478, 1807
Eco53kI	GAGCTC	1 cut(s)	1115
Eco57I	CTGAAG	3 cut(s)	1119, 1230, 1836
Eco72I	CACGTG	1 cut(s)	1259
Eco81I	CCTNAGG	1 cut(s)	255
Eco88I	CYCGRG	2 cut(s)	1110, 1832
Eco91I	GGTNACC	1 cut(s)	1358
EcoICRI	GAGCTC	1 cut(s)	1115
EcoO109I	RGGNCCY	1 cut(s)	337
EcoO65I	GGTNACC	1 cut(s)	1358
EcoRII	CCWGG	6 cut(s)	165, 1279, 1378, 1390, 1456, 1558
EcoT14I	CCWWGG	3 cut(s)	1532, 1779, 1872
EcoT38I	GRGCYC	1 cut(s)	1117
ErhI	CCWWGG	3 cut(s)	1532, 1779, 1872
Esp3I	CGTCTC	1 cut(s)	603
FaeI	CATG	9 cut(s)	419, 710, 919, 1035, 1573, 1630, 1769, 1795, 1876
FaqI	GGGAC	4 cut(s)	215, 350, 1551, 1601
FatI	CATG	9 cut(s)	415, 706, 915, 1031, 1569, 1626, 1765, 1791, 1872
FauNDI	CATATG	2 cut(s)	1524, 1621
FblI	GTMKAC	1 cut(s)	645
FokI	GGATG	6 cut(s)	272, 565, 692, 752, 983, 1889
FriOI	GRGCYC	1 cut(s)	1117
FspBI	CTAG	3 cut(s)	342, 1295, 1533
FspI	TGCGCA	1 cut(s)	1173
GlaI	GCGC	2 cut(s)	1173, 1918
GsaI	CCCAGC	1 cut(s)	88
GsuI	CTGGAG	3 cut(s)	1311, 1611, 1781
HaeII	RGCGCY	1 cut(s)	1920
HaeIII	GGCC	8 cut(s)	48, 477, 1228, 1390, 1449, 1464, 1682, 1871
HapII	CCGG	4 cut(s)	72, 334, 363, 1289
HhaI	GCGC	2 cut(s)	1174, 1919
Hin1I	GRCGYC	1 cut(s)	101
Hin1II	CATG	9 cut(s)	419, 710, 919, 1035, 1573, 1630, 1769, 1795, 1876
Hin6I	GCGC	2 cut(s)	1172, 1917
HinP1I	GCGC	2 cut(s)	1172, 1917
HincII	GTYRAC	3 cut(s)	241, 775, 1753
HindII	GTYRAC	3 cut(s)	241, 775, 1753
HindIII	AAGCTT	2 cut(s)	813, 1104
HinfI	GANTC	7 cut(s)	10, 140, 382, 665, 1593, 1769, 1835
HpaII	CCGG	4 cut(s)	72, 334, 363, 1289
HphI	GGTGA	3 cut(s)	1742, 1795, 1830
Hpy166II	GTNNAC	6 cut(s)	241, 646, 775, 1400, 1546, 1753
Hpy188I	TCNGA	7 cut(s)	9, 285, 528, 664, 867, 1012, 1884
Hpy8I	GTNNAC	6 cut(s)	241, 646, 775, 1400, 1546, 1753
Hpy99I	CGWCG	3 cut(s)	103, 106, 1470
HpyAV	CCTTC	6 cut(s)	740, 835, 889, 913, 1254, 1852
HpyCH4III	ACNGT	3 cut(s)	1019, 1024, 1929
HpyCH4IV	ACGT	7 cut(s)	101, 111, 237, 648, 1258, 1468, 1540
HpyF3I	CTNAG	7 cut(s)	6, 255, 525, 864, 1122, 1209, 1883
HpySE526I	ACGT	7 cut(s)	101, 111, 237, 648, 1258, 1468, 1540
Hsp92I	GRCGYC	1 cut(s)	101
Hsp92II	CATG	9 cut(s)	419, 710, 919, 1035, 1573, 1630, 1769, 1795, 1876
HspAI	GCGC	2 cut(s)	1172, 1917
KflI	GGGWCCC	1 cut(s)	337
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
Kzo9I	GATC	6 cut(s)	118, 154, 218, 784, 831, 1048
LguI	GCTCTTC	1 cut(s)	1186
LmnI	GCTCC	3 cut(s)	1258, 1291, 1762
LweI	GCATC	7 cut(s)	250, 457, 543, 987, 1503, 1639, 1713
MabI	ACCWGGT	2 cut(s)	165, 1558
MaeI	CTAG	3 cut(s)	342, 1295, 1533
MaeII	ACGT	7 cut(s)	101, 111, 237, 648, 1258, 1468, 1540
MaeIII	GTNAC	5 cut(s)	133, 233, 1358, 1783, 1836
MalI	GATC	6 cut(s)	120, 156, 220, 786, 833, 1050
MbiI	CCGCTC	1 cut(s)	45
MboI	GATC	6 cut(s)	118, 154, 218, 784, 831, 1048
MboII	GAAGA	7 cut(s)	420, 841, 880, 1112, 1196, 1203, 1923
MfeI	CAATTG	1 cut(s)	396
MflI	RGATCY	2 cut(s)	118, 784
MhlI	GDGCHC	5 cut(s)	82, 212, 274, 1117, 1288
MlsI	TGGCCA	2 cut(s)	477, 1682
MluNI	TGGCCA	2 cut(s)	477, 1682
MlyI	GAGTC	4 cut(s)	134, 1602, 1778, 1844
Mox20I	TGGCCA	2 cut(s)	477, 1682
MreI	CGCCGGCG	1 cut(s)	71
MroNI	GCCGGC	1 cut(s)	71
MscI	TGGCCA	2 cut(s)	477, 1682
MseI	TTAA	4 cut(s)	545, 561, 636, 1385
MslI	CAYNNNNRTG	1 cut(s)	1640
Msp20I	TGGCCA	2 cut(s)	477, 1682
MspA1I	CMGCKG	2 cut(s)	148, 1759
MspI	CCGG	4 cut(s)	72, 334, 363, 1289
MspR9I	CCNGG	8 cut(s)	167, 335, 1281, 1290, 1380, 1392, 1458, 1560
MunI	CAATTG	1 cut(s)	396
MvaI	CCWGG	6 cut(s)	167, 1281, 1380, 1392, 1458, 1560
NaeI	GCCGGC	1 cut(s)	73
NciI	CCSGG	2 cut(s)	335, 1290
NcoI	CCATGG	1 cut(s)	1872
NdeI	CATATG	2 cut(s)	1524, 1621
NdeII	GATC	6 cut(s)	118, 154, 218, 784, 831, 1048
NgoMIV	GCCGGC	1 cut(s)	71
NlaIII	CATG	9 cut(s)	419, 710, 919, 1035, 1573, 1630, 1769, 1795, 1876
NlaIV	GGNNCC	8 cut(s)	79, 338, 339, 361, 786, 1242, 1254, 1633
NmeAIII	GCCGAG	1 cut(s)	204
NmuCI	GTSAC	2 cut(s)	1783, 1836
NsbI	TGCGCA	1 cut(s)	1173
NspI	RCATGY	2 cut(s)	1573, 1795
PaeI	GCATGC	1 cut(s)	1795
PaeR7I	CTCGAG	2 cut(s)	1110, 1832
PaqCI	CACCTGC	1 cut(s)	1646
PceI	AGGCCT	1 cut(s)	1390
PciSI	GCTCTTC	1 cut(s)	1186
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PdiI	GCCGGC	1 cut(s)	73
PfeI	GAWTC	3 cut(s)	10, 382, 665
PflMI	CCANNNNNTGG	2 cut(s)	1349, 1589
PleI	GAGTC	4 cut(s)	134, 1601, 1777, 1843
PmaCI	CACGTG	1 cut(s)	1259
PmlI	CACGTG	1 cut(s)	1259
PpsI	GAGTC	4 cut(s)	134, 1601, 1777, 1843
Ppu21I	YACGTR	1 cut(s)	1259
PpuMI	RGGWCCY	1 cut(s)	337
Psp124BI	GAGCTC	1 cut(s)	1117
Psp5II	RGGWCCY	1 cut(s)	337
Psp6I	CCWGG	6 cut(s)	165, 1279, 1378, 1390, 1456, 1558
PspCI	CACGTG	1 cut(s)	1259
PspEI	GGTNACC	1 cut(s)	1358
PspFI	CCCAGC	1 cut(s)	84
PspGI	CCWGG	6 cut(s)	165, 1279, 1378, 1390, 1456, 1558
PspN4I	GGNNCC	8 cut(s)	79, 338, 339, 361, 786, 1242, 1254, 1633
PspPI	GGNCC	8 cut(s)	47, 251, 337, 1400, 1429, 1447, 1478, 1807
PspPPI	RGGWCCY	1 cut(s)	337
PspXI	VCTCGAGB	1 cut(s)	1832
PsrI	GAACNNNNNNTAC	4 cut(s)	143, 175, 1012, 1044
PstI	CTGCAG	2 cut(s)	200, 1657
PstNI	CAGNNNCTG	1 cut(s)	794
PsuI	RGATCY	2 cut(s)	118, 784
PvuII	CAGCTG	2 cut(s)	148, 1759
RsaI	GTAC	8 cut(s)	110, 152, 875, 1016, 1021, 1274, 1313, 1547
RsaNI	GTAC	8 cut(s)	109, 151, 874, 1015, 1020, 1273, 1312, 1546
RseI	CAYNNNNRTG	1 cut(s)	1640
SacI	GAGCTC	1 cut(s)	1117
SapI	GCTCTTC	1 cut(s)	1186
SaqAI	TTAA	4 cut(s)	545, 561, 636, 1385
Sau3AI	GATC	6 cut(s)	118, 154, 218, 784, 831, 1048
Sau96I	GGNCC	8 cut(s)	47, 251, 337, 1400, 1429, 1447, 1478, 1807
SchI	GAGTC	4 cut(s)	134, 1602, 1778, 1844
ScrFI	CCNGG	8 cut(s)	167, 335, 1281, 1290, 1380, 1392, 1458, 1560
SduI	GDGCHC	5 cut(s)	82, 212, 274, 1117, 1288
SexAI	ACCWGGT	2 cut(s)	165, 1558
SfaNI	GCATC	7 cut(s)	250, 457, 543, 987, 1503, 1639, 1713
SfcI	CTRYAG	4 cut(s)	196, 244, 1202, 1653
Sfr274I	CTCGAG	2 cut(s)	1110, 1832
SgrAI	CRCCGGYG	1 cut(s)	71
SinI	GGWCC	6 cut(s)	251, 337, 1400, 1429, 1478, 1807
SlaI	CTCGAG	2 cut(s)	1110, 1832
SmiMI	CAYNNNNRTG	1 cut(s)	1640
SmlI	CTYRAG	4 cut(s)	205, 995, 1110, 1832
SmoI	CTYRAG	4 cut(s)	205, 995, 1110, 1832
SphI	GCATGC	1 cut(s)	1795
SseBI	AGGCCT	1 cut(s)	1390
SsiI	CCGC	6 cut(s)	45, 62, 75, 249, 595, 1549
SspI	AATATT	1 cut(s)	442
SspMI	CTAG	3 cut(s)	342, 1295, 1533
SstI	GAGCTC	1 cut(s)	1117
StuI	AGGCCT	1 cut(s)	1390
StyD4I	CCNGG	8 cut(s)	165, 333, 1279, 1288, 1378, 1390, 1456, 1558
StyI	CCWWGG	3 cut(s)	1532, 1779, 1872
TaaI	ACNGT	3 cut(s)	1019, 1024, 1929
TaiI	ACGT	7 cut(s)	104, 114, 240, 651, 1261, 1471, 1543
TaqI	TCGA	4 cut(s)	98, 834, 1111, 1833
TaqII	GACCGA	1 cut(s)	161
TauI	GCSGC	2 cut(s)	48, 65
TfiI	GAWTC	3 cut(s)	10, 382, 665
Tru1I	TTAA	4 cut(s)	545, 561, 636, 1385
Tru9I	TTAA	4 cut(s)	545, 561, 636, 1385
TseFI	GTSAC	2 cut(s)	1783, 1836
Tsp45I	GTSAC	2 cut(s)	1783, 1836
TspDTI	ATGAA	5 cut(s)	932, 1002, 1020, 1142, 1923
TspGWI	ACGGA	1 cut(s)	627
Van91I	CCANNNNNTGG	2 cut(s)	1349, 1589
VpaK11BI	GGWCC	6 cut(s)	251, 337, 1400, 1429, 1478, 1807
XapI	RAATTY	1 cut(s)	632
XceI	RCATGY	2 cut(s)	1573, 1795
XhoI	CTCGAG	2 cut(s)	1110, 1832
XmaJI	CCTAGG	1 cut(s)	1532
XmiI	GTMKAC	1 cut(s)	645
XspI	CTAG	3 cut(s)	342, 1295, 1533
ZraI	GACGTC	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.