Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002657

Physical Location & Seq

Genomic Coordinates Forward (+)

29340183 .. 29340648

Gene Structure 466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g37220.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGAGGCCTGTTGCTATGGCTCCTGCAGTGGCTCCTCTTCAACCAATGTACCCTCCTGGTGCTCCAGGGTCAGCAAGGCCAATGCCCAGCGGTCCAGGAGGTCGACGTGGGGCAGGTCTTGTGCAACAAAACCCGCAACAAGTGCCAATGATGTCGCAGCATATGATTCTAAGAGGACGCATGTATCGTTATCCACCTGGTCACATTATACAGGAAGCACCATTTTCTGGTGGTCGTGGTATGCCTGTTCCAGCTTTGGCTTCATCCTTTGCCAATGCTTCCCCTGAAGATAGAACAAAGGACGATGCTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006412 GO:0006413 GO:0006417 GO:0006446 GO:0006518 GO:0006807 GO:0006950 GO:0006970 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009628 GO:0009651 GO:0009889 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031329 GO:0032268 GO:0034248 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0060211 GO:0060255 GO:0061013 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:1900151 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1903311 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

PABP RRM_1

Protein Analysis

105

Amino Acids

11.06

Weight (kDa)

10.81

Isoelectric Point (pI)

88.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49760 AT1G49760 AT4G34110
fragaria_vesca	FvH4_2g05720 FvH4_2g05720 FvH4_2g05720 FvH4_2g05720 FvH4_2g34040 FvH4_2g34040 FvH4_2g34040 FvH4_6g37220
malus_domestica	MD00G1138300.v1.1 MD05G1085100.v1.1 MD08G1096400.v1.1 MD15G1079100.v1.1
prunus_persica	Prupe.1G432200_v2.0.a1 Prupe.1G432200_v2.0.a1 Prupe.8G129400_v2.0.a1 Prupe.8G129400_v2.0.a1
pyrus_communis	pycom05g08430 pycom08g07840 pycom10g07970 pycom15g07370
rosa_chinensis	RchiOBHm_Chr6g0256591 RchiOBHm_Chr6g0308331
rosa_laevigata	RLG00000010649 RLG00000014752
rosa_multiflora	Rmu_sc0003012.1_g000007
rosa_roxburghii	Rroxscaffold_7G00160250 Rroxscaffold_7G00209190
rosa_rugosa	Rorug05G0564800 Rorug06G0366200 Rorug06G0366200
rosa_samantha	Rh6AG082800 Rh6AG475400 Rh6BG077400 Rh6CG072000 Rh6DG477300
rosa_wichuraiana	Rw6G007450 Rw6G041440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	104
AccB7I	CCANNNNNTGG	1 cut(s)	227
AccI	GTMKAC	1 cut(s)	103
AciI	CCGC	2 cut(s)	90, 134
AcuI	CTGAAG	1 cut(s)	306
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	1 cut(s)	227
AgsI	TTSAA	1 cut(s)	41
AjiI	CACGTC	1 cut(s)	107
AjnI	CCWGG	4 cut(s)	55, 64, 94, 196
AluBI	AGCT	1 cut(s)	254
AluI	AGCT	1 cut(s)	254
Alw21I	GWGCWC	1 cut(s)	64
AoxI	GGCC	2 cut(s)	5, 77
ApeKI	GCWGC	1 cut(s)	157
AspS9I	GGNCC	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	92
BaeI	ACNNNNGTAYC	4 cut(s)	32, 65, 167, 200
Bbv12I	GWGCWC	1 cut(s)	64
BbvI	GCAGC	1 cut(s)	169
BciT130I	CCWGG	4 cut(s)	57, 66, 96, 198
BfmI	CTRYAG	1 cut(s)	24
BfuAI	ACCTGC	1 cut(s)	104
BisI	GCNGC	1 cut(s)	158
BlsI	GCNGC	1 cut(s)	159
Bme1390I	CCNGG	4 cut(s)	57, 66, 96, 198
Bme18I	GGWCC	1 cut(s)	92
BmgBI	CACGTC	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	92
BmiI	GGNNCC	2 cut(s)	21, 33
BmrFI	CCNGG	4 cut(s)	57, 66, 96, 198
BmsI	GCATC	1 cut(s)	295
BpmI	CTGGAG	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
BseBI	CCWGG	4 cut(s)	57, 66, 96, 198
BseDI	CCNNGG	1 cut(s)	65
BseGI	GGATG	1 cut(s)	263
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseRI	GAGGAG	1 cut(s)	24
BseXI	GCAGC	1 cut(s)	169
BseYI	CCCAGC	1 cut(s)	86
BshFI	GGCC	2 cut(s)	7, 79
BsiHKAI	GWGCWC	1 cut(s)	64
BslI	CCNNNNNNNGG	1 cut(s)	227
BsnI	GGCC	2 cut(s)	7, 79
Bsp1286I	GDGCHC	1 cut(s)	64
BspACI	CCGC	2 cut(s)	90, 134
BspANI	GGCC	2 cut(s)	7, 79
BspLI	GGNNCC	2 cut(s)	21, 33
BspMAI	CTGCAG	1 cut(s)	28
BspMI	ACCTGC	1 cut(s)	104
BssECI	CCNNGG	1 cut(s)	65
Bst2UI	CCWGG	4 cut(s)	57, 66, 96, 198
Bst6I	CTCTTC	1 cut(s)	42
BstAPI	GCANNNNNTGC	1 cut(s)	142
BstDEI	CTNAG	1 cut(s)	170
BstF5I	GGATG	1 cut(s)	263
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstNI	CCWGG	4 cut(s)	57, 66, 96, 198
BstNSI	RCATGY	1 cut(s)	184
BstSCI	CCNGG	4 cut(s)	55, 64, 94, 196
BstSFI	CTRYAG	1 cut(s)	24
BstV1I	GCAGC	1 cut(s)	169
BsuRI	GGCC	2 cut(s)	7, 79
BtrI	CACGTC	1 cut(s)	107
BtsCI	GGATG	1 cut(s)	263
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	33
BveI	ACCTGC	1 cut(s)	104
Cfr13I	GGNCC	1 cut(s)	92
CseI	GACGC	1 cut(s)	186
CsiI	ACCWGGT	1 cut(s)	196
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	1 cut(s)	181
CviJI	RGCY	6 cut(s)	7, 20, 32, 79, 254, 260
CviKI_1	RGCY	6 cut(s)	7, 20, 32, 79, 254, 260
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	1 cut(s)	170
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco147I	AGGCCT	1 cut(s)	7
Eco47I	GGWCC	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	306
EcoRII	CCWGG	4 cut(s)	55, 64, 94, 196
FaeI	CATG	1 cut(s)	184
FaiI	YATR	6 cut(s)	17, 162, 164, 182, 209, 242
FatI	CATG	1 cut(s)	180
FauI	CCCGC	1 cut(s)	141
FauNDI	CATATG	1 cut(s)	162
FblI	GTMKAC	1 cut(s)	103
Fnu4HI	GCNGC	1 cut(s)	158
FokI	GGATG	1 cut(s)	250
Fsp4HI	GCNGC	1 cut(s)	158
GluI	GCNGC	1 cut(s)	158
GsaI	CCCAGC	1 cut(s)	90
GsuI	CTGGAG	1 cut(s)	48
HaeIII	GGCC	2 cut(s)	7, 79
HgaI	GACGC	1 cut(s)	186
Hin1II	CATG	1 cut(s)	184
HincII	GTYRAC	1 cut(s)	104
HindII	GTYRAC	1 cut(s)	104
HinfI	GANTC	1 cut(s)	166
Hpy166II	GTNNAC	1 cut(s)	104
Hpy8I	GTNNAC	1 cut(s)	104
Hpy99I	CGWCG	1 cut(s)	108
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	2 cut(s)	26, 124
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
HpyF3I	CTNAG	1 cut(s)	170
HpySE526I	ACGT	1 cut(s)	106
Hsp92II	CATG	1 cut(s)	184
LmnI	GCTCC	3 cut(s)	25, 37, 67
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	1 cut(s)	295
MabI	ACCWGGT	1 cut(s)	196
MaeII	ACGT	1 cut(s)	106
MaeIII	GTNAC	1 cut(s)	200
MboII	GAAGA	2 cut(s)	29, 299
MhlI	GDGCHC	1 cut(s)	64
MnlI	CCTC	4 cut(s)	45, 63, 92, 167
MspA1I	CMGCKG	1 cut(s)	90
MspR9I	CCNGG	4 cut(s)	57, 66, 96, 198
MvaI	CCWGG	4 cut(s)	57, 66, 96, 198
MwoI	GCNNNNNNNGC	1 cut(s)	142
NdeI	CATATG	1 cut(s)	162
NlaIII	CATG	1 cut(s)	184
NlaIV	GGNNCC	2 cut(s)	21, 33
NmuCI	GTSAC	1 cut(s)	200
NspI	RCATGY	1 cut(s)	184
PceI	AGGCCT	1 cut(s)	7
PcsI	WCGNNNNNNNCGW	1 cut(s)	184
PfeI	GAWTC	1 cut(s)	166
PflMI	CCANNNNNTGG	1 cut(s)	227
PfoI	TCCNGGA	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	159
Psp6I	CCWGG	4 cut(s)	55, 64, 94, 196
PspFI	CCCAGC	1 cut(s)	86
PspGI	CCWGG	4 cut(s)	55, 64, 94, 196
PspN4I	GGNNCC	2 cut(s)	21, 33
PspPI	GGNCC	1 cut(s)	92
PstI	CTGCAG	1 cut(s)	28
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SalI	GTCGAC	1 cut(s)	102
SatI	GCNGC	1 cut(s)	158
Sau96I	GGNCC	1 cut(s)	92
ScrFI	CCNGG	4 cut(s)	57, 66, 96, 198
SduI	GDGCHC	1 cut(s)	64
SetI	ASST	5 cut(s)	103, 109, 118, 199, 256
SexAI	ACCWGGT	1 cut(s)	196
SfaNI	GCATC	1 cut(s)	295
SfcI	CTRYAG	1 cut(s)	24
SinI	GGWCC	1 cut(s)	92
SseBI	AGGCCT	1 cut(s)	7
SsiI	CCGC	2 cut(s)	90, 134
StuI	AGGCCT	1 cut(s)	7
StyD4I	CCNGG	4 cut(s)	55, 64, 94, 196
TaiI	ACGT	1 cut(s)	109
TaqI	TCGA	1 cut(s)	103
TfiI	GAWTC	1 cut(s)	166
TscAI	CASTG	1 cut(s)	33
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	1 cut(s)	157
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	1 cut(s)	252
TspRI	CASTG	1 cut(s)	33
Van91I	CCANNNNNTGG	1 cut(s)	227
VpaK11BI	GGWCC	1 cut(s)	92
XceI	RCATGY	1 cut(s)	184
XmiI	GTMKAC	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.