Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002657

Physical Location & Seq

Genomic Coordinates Forward (+)

12431013 .. 12435316

Gene Structure 4304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG082800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1962 bp

ATGGCGCAAGCTCAGGTTCAGGGTCAGAATGCGAACGCCGCGGCGGCGGCTGCTGCGGCGGCGGCTAATGGTGGTGGGGCCAACCAGTTCGTGACGACGTCGCTTTACGTTGGGGATCTCGACCAGAACATTACGGATTCGCAGCTGTACGACCTGTTCAACCAGCTGGGTCAGGTCGTGTCTGTTAGGGTTTGCAGGGACTTGTCCACACGGAGGTCGCTTGGTTACGGCTATGTCAATTATAGCAACCCGCAGGATGCTGCTAGGGCATTGGATGTGTTGAACTTCACTCCTGTAAATGGAAGGCCCATTAGGATCATGTACTCTCACCGTGATCCTAGTATTCGTAAAAGTGGGTCTGGAAATATATTTATTAAGAATTTGGACAAAGCTCTTGATCACAAAGCCTTGCATGATACATTTTCTTCATTCGGAAACATCCTTTCTTGCAAGGTGGCAACAGACTCCTCTGGCCAGTCAAAGGGCTATGGCTTTGTGCAATTTGATAATGAAGAAGCTGCCCAAAAAGCTATTGCGAAGTTGAATGGTATGCTTATAAATGATAAGCAAGTTTTTGTAGGACCATTCCTCCGCAAACAGGAAAGGGAGGGTGTTGCTGACAAGTCAAAGTTCCAGAATGTTTATGTGAAGAATCTATCAGAATTGACTACTGAAGATGATTTTACCAAAATTTTTGGTGAATTTGGACCAATCACTAGCGTAGTGATCATGAGAGATCAAGATGGAAAATCAAAGTGCTTTGGATTTGTCAACTTTGATAATCCAGATGATGCTGCCAGAGCTGTTGAGGCTCTGAATGGAAAGAAATTTGATGATAAGGAGTGGTATGTTGGGAAGGCCCAGAAGAAATCTGAAAGGGAAAATGAATTGAAACTTCGATTTGAACAGAGCATGAAAGAGGCAGCAGACAAATATCAAGGAGCAAACTTGTATGTTAAAAATTTAGATGATAGCATAGTTGATGATAAACTTAAGGAGCTCTTCACTCCATTTGGCACAATTACCTCGTGTAAGGTCATGCGAGACCCCAACGGAGTAAGTAGGGGTTCCGGTTTTGTTGCATTCTCAACTCCTGAAGAGGCAAATAGAGCTCTGGCGGAGATGAATGGAAAAATGATTGTAAGCAAACCTCTCTATGTTGCACTTGCGCAACGAAAAGAAGATAGAAGAGCGAGGCTCCAGGCTCAGTTTTCTCAAATGCGGCCAGTTGCAATGGCACCTTCAGTTGCTCCTCGTATGCCAATGTACCCTCCTGGTGGTCCAGGTATTGGGCAGCAAATATTCTATGGTCAAGCCCCACCTGCTATCATTCCTTCCCAGCCTGGATTTGGATATCAGCAGCAGCTTGTTCCTGGTATGAGACCTGGCGGCGCTCCCATGCCAAACTTCTTTGTGCCAATGGTTCAGCAGGGGCAGCAAGGGCAGCGCCCTGGTGGCAGACGTGCAGGCCCTGCGCAGCAAAACCAGCAACCAGTTCCATTAATGCAACAGCAGATGCTTCCAAGAGGGCGTGTCTACCGTTACCCGTCTGGGCGTGCTCTGCCTGATGGTCCCATGCCTGGTGTTGGAGGCATGTTTTCTGTTCCATATGACTTGTCTGGCATGCCATTGCGTGATCCAGCACTGTCTCAGCCTGTTCCAATTGGGACTTTGGCTAGTGCCCTTGCAAATGCTACACCAGAGCAGCAAAGGACGATGCTGGGGGAGAATCTTTACCCACTGGTGGAACAGCTGGAACCTGACAATGCAGCGAAGGTTACTGGCATGCTTCTTGAGATGGATCAAACTGAGGTTCTGCATTTGCTCGAGTCACCCGAAGCTTTGAAAGCAAAGGTGGCTGAAGCTATGGAGGTTCTGAGGAATGTTGCTCAGCAGCAGCAAGCTGGCGGTGCAGCTGATCAACTAGCCTCATTGTCGCTCAATGATAATCTTGTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006412 GO:0006413 GO:0006417 GO:0006446 GO:0006518 GO:0006807 GO:0006950 GO:0006970 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009628 GO:0009651 GO:0009889 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031329 GO:0032268 GO:0034248 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0060211 GO:0060255 GO:0061013 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:1900151 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1903311 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

PABP RRM_1

Protein Analysis

653

Amino Acids

71.18

Weight (kDa)

8.38

Isoelectric Point (pI)

38.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	35 - 105	1.3e-19	RNA recognition motif
RRM_1	PF00076	123 - 190	3.3e-21	RNA recognition motif
RRM_1	PF00076	214 - 282	8.4e-24	RNA recognition motif
RRM_1	PF00076	317 - 385	1.8e-19	RNA recognition motif
MLLE	PF00658	561 - 626	4.3e-30	MLLE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49760 AT1G49760 AT4G34110
fragaria_vesca	FvH4_2g05720 FvH4_2g05720 FvH4_2g05720 FvH4_2g05720 FvH4_2g34040 FvH4_2g34040 FvH4_2g34040 FvH4_6g37220
malus_domestica	MD00G1138300.v1.1 MD05G1085100.v1.1 MD08G1096400.v1.1 MD15G1079100.v1.1
prunus_persica	Prupe.1G432200_v2.0.a1 Prupe.1G432200_v2.0.a1 Prupe.8G129400_v2.0.a1 Prupe.8G129400_v2.0.a1
pyrus_communis	pycom05g08430 pycom08g07840 pycom10g07970 pycom15g07370
rosa_chinensis	RchiOBHm_Chr6g0256591 RchiOBHm_Chr6g0308331
rosa_laevigata	RLG00000010649 RLG00000014752
rosa_multiflora	Rmu_sc0003012.1_g000007
rosa_roxburghii	Rroxscaffold_7G00160250 Rroxscaffold_7G00209190
rosa_rugosa	Rorug05G0564800 Rorug06G0366200 Rorug06G0366200
rosa_samantha	Rh6AG082800 Rh6AG475400 Rh6BG077400 Rh6CG072000 Rh6DG477300
rosa_wichuraiana	Rw6G007450 Rw6G041440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	557
AarI	CACCTGC	1 cut(s)	1330
AatII	GACGTC	1 cut(s)	101
Acc16I	TGCGCA	2 cut(s)	1170, 1476
Acc36I	ACCTGC	1 cut(s)	1330
AccB1I	GGYRCC	1 cut(s)	1237
AccB7I	CCANNNNNTGG	1 cut(s)	1289
AccI	GTMKAC	1 cut(s)	1536
AccII	CGCG	1 cut(s)	41
AclWI	GGATC	5 cut(s)	123, 323, 329, 1631, 1809
AcoI	YGGCCR	2 cut(s)	472, 1223
AcsI	RAATTY	5 cut(s)	379, 690, 701, 827, 961
AcuI	CTGAAG	4 cut(s)	693, 1116, 1227, 1881
AcyI	GRCGYC	1 cut(s)	98
AfaI	GTAC	3 cut(s)	149, 323, 1268
AflII	CTTAAG	1 cut(s)	992
AgsI	TTSAA	6 cut(s)	160, 283, 544, 892, 905, 1846
AjiI	CACGTC	1 cut(s)	1463
AjnI	CCWGG	8 cut(s)	1200, 1273, 1282, 1342, 1372, 1384, 1450, 1579
Alw21I	GWGCWC	3 cut(s)	1002, 1114, 1561
Alw26I	GTCTC	3 cut(s)	1038, 1375, 1653
AlwI	GGATC	5 cut(s)	123, 323, 329, 1631, 1809
AlwNI	CAGNNNCTG	1 cut(s)	1472
Ama87I	CYCGRG	1 cut(s)	1826
AoxI	GGCC	6 cut(s)	78, 305, 472, 858, 1223, 1468
ApoI	RAATTY	5 cut(s)	379, 690, 701, 827, 961
AseI	ATTAAT	1 cut(s)	1502
AspLEI	GCGC	5 cut(s)	7, 1171, 1394, 1449, 1477
AspS9I	GGNCC	8 cut(s)	78, 306, 581, 707, 859, 1280, 1469, 1571
AsuHPI	GGTGA	3 cut(s)	320, 710, 1824
AvaI	CYCGRG	1 cut(s)	1826
AvaII	GGWCC	4 cut(s)	581, 707, 1280, 1571
BaeGI	GKGCMC	1 cut(s)	1684
BalI	TGGCCA	1 cut(s)	474
BanI	GGYRCC	1 cut(s)	1237
BanII	GRGCYC	2 cut(s)	1002, 1114
BauI	CACGAG	1 cut(s)	1027
Bbv12I	GWGCWC	3 cut(s)	1002, 1114, 1561
BccI	CCATC	3 cut(s)	737, 1562, 1792
BceAI	ACGGC	1 cut(s)	244
BciT130I	CCWGG	8 cut(s)	1202, 1275, 1284, 1344, 1374, 1386, 1452, 1581
BclI	TGATCA	3 cut(s)	397, 726, 1918
BcoDI	GTCTC	3 cut(s)	1038, 1375, 1653
BfaI	CTAG	5 cut(s)	264, 339, 717, 1677, 1925
BfoI	RGCGCY	2 cut(s)	1395, 1450
BfrI	CTTAAG	1 cut(s)	992
BfuAI	ACCTGC	1 cut(s)	1330
BglI	GCCNNNNNGGC	2 cut(s)	44, 1455
BlpI	GCTNAGC	1 cut(s)	1890
Bme1390I	CCNGG	8 cut(s)	1202, 1275, 1284, 1344, 1374, 1386, 1452, 1581
Bme18I	GGWCC	4 cut(s)	581, 707, 1280, 1571
BmeT110I	CYCGRG	1 cut(s)	1826
BmgBI	CACGTC	1 cut(s)	1463
BmgT120I	GGNCC	8 cut(s)	78, 306, 581, 707, 859, 1280, 1469, 1571
BmiI	GGNNCC	6 cut(s)	79, 1069, 1199, 1239, 1573, 1758
BmrFI	CCNGG	8 cut(s)	1202, 1275, 1284, 1344, 1374, 1386, 1452, 1581
BmsI	GCATC	4 cut(s)	247, 781, 1506, 1707
BplI	GAGNNNNNCTC	2 cut(s)	1182, 1214
BpmI	CTGGAG	1 cut(s)	1184
Bpu10I	CCTNAGC	1 cut(s)	12
Bpu1102I	GCTNAGC	1 cut(s)	1890
BpuEI	CTTGAG	1 cut(s)	1814
BsaHI	GRCGYC	1 cut(s)	98
BsaI	GGTCTC	2 cut(s)	1038, 1375
BsaJI	CCNNGG	2 cut(s)	39, 1450
BsaWI	WCCGGW	1 cut(s)	1070
BsaXI	ACNNNNNCTCC	2 cut(s)	573, 603
Bse1I	ACTGG	6 cut(s)	85, 475, 1226, 1493, 1746, 1786
Bse3DI	GCAATG	2 cut(s)	1239, 1628
BseBI	CCWGG	8 cut(s)	1202, 1275, 1284, 1344, 1374, 1386, 1452, 1581
BseDI	CCNNGG	2 cut(s)	39, 1450
BseGI	GGATG	3 cut(s)	262, 280, 438
BseMI	GCAATG	2 cut(s)	1239, 1628
BseMII	CTCAG	6 cut(s)	26, 1220, 1664, 1800, 1868, 1904
BseNI	ACTGG	6 cut(s)	85, 475, 1226, 1493, 1746, 1786
BseRI	GAGGAG	2 cut(s)	457, 1242
BseSI	GKGCMC	1 cut(s)	1684
BseYI	CCCAGC	3 cut(s)	166, 1338, 1720
BsgI	GTGCAG	2 cut(s)	1485, 1932
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	6 cut(s)	80, 307, 474, 860, 1225, 1470
BshNI	GGYRCC	1 cut(s)	1237
BsiHKAI	GWGCWC	3 cut(s)	1002, 1114, 1561
BsiHKCI	CYCGRG	1 cut(s)	1826
BsiSI	CCGG	1 cut(s)	1071
BslFI	GGGAC	3 cut(s)	212, 1557, 1681
BsmAI	GTCTC	3 cut(s)	1038, 1375, 1653
BsmFI	GGGAC	3 cut(s)	212, 1557, 1681
BsmI	GAATGC	2 cut(s)	34, 1082
BsnI	GGCC	6 cut(s)	80, 307, 474, 860, 1225, 1470
Bso31I	GGTCTC	2 cut(s)	1038, 1375
BsoBI	CYCGRG	1 cut(s)	1826
Bsp1286I	GDGCHC	4 cut(s)	1002, 1114, 1561, 1684
Bsp143I	GATC	9 cut(s)	115, 315, 334, 397, 726, 736, 1636, 1801, 1918
Bsp1720I	GCTNAGC	1 cut(s)	1890
BspANI	GGCC	6 cut(s)	80, 307, 474, 860, 1225, 1470
BspCNI	CTCAG	6 cut(s)	25, 1219, 1663, 1801, 1869, 1903
BspFNI	CGCG	1 cut(s)	41
BspHI	TCATGA	1 cut(s)	729
BspLI	GGNNCC	6 cut(s)	79, 1069, 1199, 1239, 1573, 1758
BspMI	ACCTGC	1 cut(s)	1330
BspPI	GGATC	5 cut(s)	123, 323, 329, 1631, 1809
BspQI	GCTCTTC	2 cut(s)	1007, 1183
BspT107I	GGYRCC	1 cut(s)	1237
BspTI	CTTAAG	1 cut(s)	992
BspTNI	GGTCTC	2 cut(s)	1038, 1375
BsrDI	GCAATG	2 cut(s)	1239, 1628
BsrI	ACTGG	6 cut(s)	85, 475, 1226, 1493, 1746, 1786
BssECI	CCNNGG	2 cut(s)	39, 1450
BssMI	GATC	9 cut(s)	115, 315, 334, 397, 726, 736, 1636, 1801, 1918
BssNI	GRCGYC	1 cut(s)	98
BssSI	CACGAG	1 cut(s)	1027
Bst2BI	CACGAG	1 cut(s)	1027
Bst2UI	CCWGG	8 cut(s)	1202, 1275, 1284, 1344, 1374, 1386, 1452, 1581
Bst4CI	ACNGT	3 cut(s)	332, 1541, 1647
Bst6I	CTCTTC	3 cut(s)	1007, 1092, 1183
BstACI	GRCGYC	1 cut(s)	98
BstAFI	CTTAAG	1 cut(s)	992
BstAPI	GCANNNNNTGC	1 cut(s)	1472
BstC8I	GCNNGC	7 cut(s)	9, 1468, 1557, 1625, 1787, 1902, 1906
BstDEI	CTNAG	6 cut(s)	12, 1206, 1650, 1809, 1877, 1890
BstDSI	CCRYGG	1 cut(s)	39
BstF5I	GGATG	3 cut(s)	262, 280, 438
BstFNI	CGCG	1 cut(s)	41
BstH2I	RGCGCY	2 cut(s)	1395, 1450
BstHHI	GCGC	5 cut(s)	7, 1171, 1394, 1449, 1477
BstKTI	GATC	9 cut(s)	118, 318, 337, 400, 729, 739, 1639, 1804, 1921
BstMAI	GTCTC	3 cut(s)	1038, 1375, 1653
BstMBI	GATC	9 cut(s)	115, 315, 334, 397, 726, 736, 1636, 1801, 1918
BstNI	CCWGG	8 cut(s)	1202, 1275, 1284, 1344, 1374, 1386, 1452, 1581
BstNSI	RCATGY	3 cut(s)	1597, 1627, 1789
BstSCI	CCNGG	8 cut(s)	1200, 1273, 1282, 1342, 1372, 1384, 1450, 1579
BstSLI	GKGCMC	1 cut(s)	1684
BstUI	CGCG	1 cut(s)	41
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
BsuRI	GGCC	6 cut(s)	80, 307, 474, 860, 1225, 1470
BtgI	CCRYGG	1 cut(s)	39
BtrI	CACGTC	1 cut(s)	1463
BtsCI	GGATG	3 cut(s)	262, 280, 438
BtsIMutI	CAGTG	2 cut(s)	1643, 1739
BveI	ACCTGC	1 cut(s)	1330
Cac8I	GCNNGC	7 cut(s)	9, 1468, 1557, 1625, 1787, 1902, 1906
CaiI	CAGNNNCTG	1 cut(s)	1472
CciI	TCATGA	1 cut(s)	729
CfoI	GCGC	5 cut(s)	7, 1171, 1394, 1449, 1477
Cfr13I	GGNCC	8 cut(s)	78, 306, 581, 707, 859, 1280, 1469, 1571
Cfr42I	CCGCGG	1 cut(s)	42
Csp6I	GTAC	3 cut(s)	148, 322, 1267
CviQI	GTAC	3 cut(s)	148, 322, 1267
DdeI	CTNAG	6 cut(s)	12, 1206, 1650, 1809, 1877, 1890
DpnI	GATC	9 cut(s)	117, 317, 336, 399, 728, 738, 1638, 1803, 1920
DpnII	GATC	9 cut(s)	115, 315, 334, 397, 726, 736, 1636, 1801, 1918
EaeI	YGGCCR	2 cut(s)	472, 1223
Eam1104I	CTCTTC	3 cut(s)	1007, 1092, 1183
EarI	CTCTTC	3 cut(s)	1007, 1092, 1183
EciI	GGCGGA	1 cut(s)	1133
Ecl136II	GAGCTC	2 cut(s)	1000, 1112
Eco24I	GRGCYC	2 cut(s)	1002, 1114
Eco31I	GGTCTC	2 cut(s)	1038, 1375
Eco32I	GATATC	1 cut(s)	1355
Eco47I	GGWCC	4 cut(s)	581, 707, 1280, 1571
Eco53kI	GAGCTC	2 cut(s)	1000, 1112
Eco57I	CTGAAG	4 cut(s)	693, 1116, 1227, 1881
Eco88I	CYCGRG	1 cut(s)	1826
EcoICRI	GAGCTC	2 cut(s)	1000, 1112
EcoO109I	RGGNCCY	1 cut(s)	1469
EcoRII	CCWGG	8 cut(s)	1200, 1273, 1282, 1342, 1372, 1384, 1450, 1579
EcoRV	GATATC	1 cut(s)	1355
EcoT38I	GRGCYC	2 cut(s)	1002, 1114
FalI	AAGNNNNNCTT	2 cut(s)	986, 1018
FaqI	GGGAC	3 cut(s)	212, 1557, 1681
FauI	CCCGC	1 cut(s)	258
FauNDI	CATATG	1 cut(s)	1609
FbaI	TGATCA	3 cut(s)	397, 726, 1918
FblI	GTMKAC	1 cut(s)	1536
FokI	GGATG	3 cut(s)	269, 287, 425
FriOI	GRGCYC	2 cut(s)	1002, 1114
FspBI	CTAG	5 cut(s)	264, 339, 717, 1677, 1925
FspI	TGCGCA	2 cut(s)	1170, 1476
GlaI	GCGC	5 cut(s)	6, 1170, 1393, 1448, 1476
GsaI	CCCAGC	3 cut(s)	170, 1342, 1724
GsuI	CTGGAG	1 cut(s)	1184
HaeII	RGCGCY	2 cut(s)	1395, 1450
HaeIII	GGCC	6 cut(s)	80, 307, 474, 860, 1225, 1470
HapII	CCGG	1 cut(s)	1071
HhaI	GCGC	5 cut(s)	7, 1171, 1394, 1449, 1477
Hin1I	GRCGYC	1 cut(s)	98
Hin6I	GCGC	5 cut(s)	5, 1169, 1392, 1447, 1475
HinP1I	GCGC	5 cut(s)	5, 1169, 1392, 1447, 1475
HincII	GTYRAC	1 cut(s)	772
HindII	GTYRAC	1 cut(s)	772
HindIII	AAGCTT	1 cut(s)	1839
HinfI	GANTC	5 cut(s)	137, 464, 652, 1729, 1829
HpaII	CCGG	1 cut(s)	1071
HphI	GGTGA	3 cut(s)	320, 710, 1824
Hpy166II	GTNNAC	3 cut(s)	207, 772, 1537
Hpy188I	TCNGA	6 cut(s)	27, 434, 661, 816, 874, 1878
Hpy8I	GTNNAC	3 cut(s)	207, 772, 1537
Hpy99I	CGWCG	2 cut(s)	100, 103
HpyAV	CCTTC	5 cut(s)	297, 850, 1251, 1344, 1768
HpyCH4III	ACNGT	3 cut(s)	332, 1541, 1647
HpyCH4IV	ACGT	3 cut(s)	98, 108, 1462
HpyF3I	CTNAG	6 cut(s)	12, 1206, 1650, 1809, 1877, 1890
HpySE526I	ACGT	3 cut(s)	98, 108, 1462
Hsp92I	GRCGYC	1 cut(s)	98
HspAI	GCGC	5 cut(s)	5, 1169, 1392, 1447, 1475
Ksp22I	TGATCA	3 cut(s)	397, 726, 1918
KspI	CCGCGG	1 cut(s)	42
Kzo9I	GATC	9 cut(s)	115, 315, 334, 397, 726, 736, 1636, 1801, 1918
LguI	GCTCTTC	2 cut(s)	1007, 1183
LmnI	GCTCC	5 cut(s)	941, 997, 1203, 1255, 1399
LweI	GCATC	4 cut(s)	247, 781, 1506, 1707
MaeI	CTAG	5 cut(s)	264, 339, 717, 1677, 1925
MaeII	ACGT	3 cut(s)	98, 108, 1462
MaeIII	GTNAC	5 cut(s)	91, 224, 1541, 1777, 1830
MalI	GATC	9 cut(s)	117, 317, 336, 399, 728, 738, 1638, 1803, 1920
MboI	GATC	9 cut(s)	115, 315, 334, 397, 726, 736, 1636, 1801, 1918
MboII	GAAGA	9 cut(s)	417, 524, 661, 686, 877, 994, 1109, 1193, 1200
MfeI	CAATTG	1 cut(s)	1662
MflI	RGATCY	1 cut(s)	115
MhlI	GDGCHC	4 cut(s)	1002, 1114, 1561, 1684
MlsI	TGGCCA	1 cut(s)	474
MluNI	TGGCCA	1 cut(s)	474
MlyI	GAGTC	2 cut(s)	458, 1838
MmeI	TCCRAC	1 cut(s)	1567
Mox20I	TGGCCA	1 cut(s)	474
MscI	TGGCCA	1 cut(s)	474
MseI	TTAA	4 cut(s)	375, 957, 993, 1502
Msp20I	TGGCCA	1 cut(s)	474
MspA1I	CMGCKG	5 cut(s)	41, 145, 166, 1753, 1916
MspCI	CTTAAG	1 cut(s)	992
MspI	CCGG	1 cut(s)	1071
MspR9I	CCNGG	8 cut(s)	1202, 1275, 1284, 1344, 1374, 1386, 1452, 1581
MunI	CAATTG	1 cut(s)	1662
Mva1269I	GAATGC	2 cut(s)	34, 1082
MvaI	CCWGG	8 cut(s)	1202, 1275, 1284, 1344, 1374, 1386, 1452, 1581
MvnI	CGCG	1 cut(s)	41
NdeI	CATATG	1 cut(s)	1609
NdeII	GATC	9 cut(s)	115, 315, 334, 397, 726, 736, 1636, 1801, 1918
NlaIV	GGNNCC	6 cut(s)	79, 1069, 1199, 1239, 1573, 1758
NmuCI	GTSAC	2 cut(s)	91, 1830
NsbI	TGCGCA	2 cut(s)	1170, 1476
NspI	RCATGY	3 cut(s)	1597, 1627, 1789
PaeI	GCATGC	2 cut(s)	1627, 1789
PaeR7I	CTCGAG	1 cut(s)	1826
PagI	TCATGA	1 cut(s)	729
PaqCI	CACCTGC	1 cut(s)	1330
PciSI	GCTCTTC	2 cut(s)	1007, 1183
PcsI	WCGNNNNNNNCGW	1 cut(s)	1833
PctI	GAATGC	2 cut(s)	34, 1082
PfeI	GAWTC	3 cut(s)	137, 652, 1729
PflFI	GACNNNGTC	1 cut(s)	97
PflMI	CCANNNNNTGG	1 cut(s)	1289
PleI	GAGTC	2 cut(s)	458, 1837
PpsI	GAGTC	2 cut(s)	458, 1837
PshBI	ATTAAT	1 cut(s)	1502
PsiI	TTATAA	1 cut(s)	557
Psp124BI	GAGCTC	2 cut(s)	1002, 1114
Psp6I	CCWGG	8 cut(s)	1200, 1273, 1282, 1342, 1372, 1384, 1450, 1579
PspFI	CCCAGC	3 cut(s)	166, 1338, 1720
PspGI	CCWGG	8 cut(s)	1200, 1273, 1282, 1342, 1372, 1384, 1450, 1579
PspN4I	GGNNCC	6 cut(s)	79, 1069, 1199, 1239, 1573, 1758
PspPI	GGNCC	8 cut(s)	78, 306, 581, 707, 859, 1280, 1469, 1571
PspXI	VCTCGAGB	1 cut(s)	1826
PsrI	GAACNNNNNNTAC	2 cut(s)	140, 172
PstNI	CAGNNNCTG	1 cut(s)	1472
PsuI	RGATCY	1 cut(s)	115
PsyI	GACNNNGTC	1 cut(s)	97
PvuII	CAGCTG	4 cut(s)	145, 166, 1753, 1916
RsaI	GTAC	3 cut(s)	149, 323, 1268
RsaNI	GTAC	3 cut(s)	148, 322, 1267
SacI	GAGCTC	2 cut(s)	1002, 1114
SacII	CCGCGG	1 cut(s)	42
SapI	GCTCTTC	2 cut(s)	1007, 1183
SaqAI	TTAA	4 cut(s)	375, 957, 993, 1502
Sau3AI	GATC	9 cut(s)	115, 315, 334, 397, 726, 736, 1636, 1801, 1918
Sau96I	GGNCC	8 cut(s)	78, 306, 581, 707, 859, 1280, 1469, 1571
SchI	GAGTC	2 cut(s)	458, 1838
ScrFI	CCNGG	8 cut(s)	1202, 1275, 1284, 1344, 1374, 1386, 1452, 1581
SduI	GDGCHC	4 cut(s)	1002, 1114, 1561, 1684
SfaNI	GCATC	4 cut(s)	247, 781, 1506, 1707
Sfr274I	CTCGAG	1 cut(s)	1826
Sfr303I	CCGCGG	1 cut(s)	42
SgrBI	CCGCGG	1 cut(s)	42
SinI	GGWCC	4 cut(s)	581, 707, 1280, 1571
SlaI	CTCGAG	1 cut(s)	1826
SmlI	CTYRAG	3 cut(s)	992, 1793, 1826
SmoI	CTYRAG	3 cut(s)	992, 1793, 1826
SphI	GCATGC	2 cut(s)	1627, 1789
SspI	AATATT	1 cut(s)	1302
SspMI	CTAG	5 cut(s)	264, 339, 717, 1677, 1925
SstI	GAGCTC	2 cut(s)	1002, 1114
StyD4I	CCNGG	8 cut(s)	1200, 1273, 1282, 1342, 1372, 1384, 1450, 1579
TaaI	ACNGT	3 cut(s)	332, 1541, 1647
TaiI	ACGT	3 cut(s)	101, 111, 1465
TaqI	TCGA	3 cut(s)	120, 898, 1827
TatI	WGTACW	1 cut(s)	321
TauI	GCSGC	9 cut(s)	41, 44, 47, 50, 59, 62, 65, 1225, 1392
TfiI	GAWTC	3 cut(s)	137, 652, 1729
Tru1I	TTAA	4 cut(s)	375, 957, 993, 1502
Tru9I	TTAA	4 cut(s)	375, 957, 993, 1502
TscAI	CASTG	2 cut(s)	1650, 1746
TseFI	GTSAC	2 cut(s)	91, 1830
Tsp45I	GTSAC	2 cut(s)	91, 1830
TspDTI	ATGAA	5 cut(s)	417, 525, 900, 929, 1139
TspGWI	ACGGA	3 cut(s)	149, 226, 1068
TspRI	CASTG	2 cut(s)	1650, 1746
Tth111I	GACNNNGTC	1 cut(s)	97
Van91I	CCANNNNNTGG	1 cut(s)	1289
Vha464I	CTTAAG	1 cut(s)	992
VpaK11BI	GGWCC	4 cut(s)	581, 707, 1280, 1571
VspI	ATTAAT	1 cut(s)	1502
XapI	RAATTY	5 cut(s)	379, 690, 701, 827, 961
XceI	RCATGY	3 cut(s)	1597, 1627, 1789
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1346
XhoI	CTCGAG	1 cut(s)	1826
XmiI	GTMKAC	1 cut(s)	1536
XspI	CTAG	5 cut(s)	264, 339, 717, 1677, 1925
ZraI	GACGTC	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.