Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0002657

Physical Location & Seq

Genomic Coordinates Forward (+)

8087841 .. 8091410

Gene Structure 3570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1096400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1947 bp

ATGGCTCAGATTCAAGTTCAGCACCAGCAGCAGCCTCCTGCGAGCGGCCCGAACGTTGTGGCGGCGAACGCCGGCGGTGGCGCCCCTCAGTTTGTTTCGACGTCGCTGTACGTTGGGGACCTCGACCAGAATGTAACCGACTCGCAGCTGTACGATCTGTTCAACCAGGTCGGTCAGGTCGTGTCGGTGAGGGTCTGCAGGGACTTGAGCACTCGCCGATCTCTGGGCTATGGTTACGTCAACTATAGCGCTCCTCAGGATGCTGCGAGGGCACTGGAAGTTCTGAACTTCACTCCACTGAATAACAAATCAATCAGGATTATGTATTCGCACCGGGACCCTAGTATTAGAAAGAGTGGAACCGGAAACATATTTATCAAGAATCTGGACAAGGCAATTGACCACAAAGCATTGCATGAGACGTTTTCTTCTTTTGGAAATATTCTTTCTTGCAAGATAGCCACCGATGCCACTGGCCAGTCAAAGGGCTATGGTTTTGTGCAATTTGATAGTGAGGATGCTGCTCAGAGTGCAATAGATAAGTTAAATGGGATGCTGCTTAATGATAAGCCAGTATTTGTAGGACACTTTCTGCGCAAGCAGGAGAGGGACGGAAATTTTAATAAGACTAAATTTAACAATGTCTATGTCAAGAATATATCCGAATCTACAACGGAAGATGAGTTGAACAAAATTTTTGGTGAACATGGACAAATAACCAGTGTTGTAGTGATGAGGGATGGGGAAGGCAAATCAAGGTGTTTTGGTTTTGTCAACTTTGAGGATCCAGAAGCTGCTGCTAAAGCTGTTGACGCTTTGAATGGAAGGAAGATCGACGAGAAGGAGTGGTATGTTGGGAAAGCTCAGAAGAAGTACGAGAGAGAGCTTGAACTGAAGGAGAGATTTGAGCAGAGCATGAAGGAAGCTAGCGATAAGTTTCAAGGTGTCAATTTGTACATCAAGAACTTGGATGACAGCATCAGTGATGAAAAACTCAAGGAATTGTTCTCGGAGTATGGTACTGTTAGTTCATGCAAGGTTATGCGTGATCCTGATGGAAACAGCAGAGGTTCTGGTTTTGTTGCCTTTTCAACTGCTGAAGAAGCTGCTCGAGCTCTTGCTGAGATGAATGGCAAAATGGTTGTTAGCAAGCCTCTGTATGTTGCACTTGCACAAAGGAAAGAAGAGAGGAAAGCAAGGTTACAGGCTCAGTTTTCTCAAATGAGGCCAGTTGCTATGGCACCTTCGGTGGCTCCACGTATGCCAATGTACCCTCCAGGTGCTCCAGGCCTAGGGCAACAATTTATGTATGGACAAGCACCTCCAGCGATAATTCCTCCACAAGCTGGATTTGGTTACCAACAGCAGCTTGTGCCTGGATTAAGGCCTGGTGGTGCACCAATGCCAAACTTCTTTGTTCCAATGGTTCAACAGGGTCAGCAGGGCCAACGCCCAGGAGGCCGACGTGGTGCAGGTCCTGTGCAACCAAACCAGCAGCCTGTGCCAATGATGCAGCAGCATATGCTGCCTAGGGGACGTGTGTACCGCTATCCACCTGGGCGCAACATGCAGGAAGTTCCATTTTCTGGAGTCGGCGGTGGCATGCATTCAGTTCCATATGACATGGGTCCCATTCCTATTCGTGATGCTGCAGGAGGCCAGGGCGTTCCGGCTTTGGCTACTGCCCTTGCAAATGCTTCAACTGAACAGCAACGGACAATGCTTGGTGAAGCCCTATATCCCCTCGTTGACCAGCTGGAGCATGAGTCAGCGGCCAAGGTGACTGGCATGCTTCTGGAGATGGACCAGACCGAAGTTTTGCATTTGCTCGAGTCACCAGAGGCTCTAAAGGCGAAGGTTGCAGAGGCCATGGATGTTCTGAGGAATGTTGCCCAACAGCAGGCTAACAGCAGCGCTGATCAACTAGCTTCGTTAACTCTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006412 GO:0006413 GO:0006417 GO:0006446 GO:0006518 GO:0006807 GO:0006950 GO:0006970 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009628 GO:0009651 GO:0009889 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031329 GO:0032268 GO:0034248 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0060211 GO:0060255 GO:0061013 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:1900151 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1903311 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

PABP RRM_1

Protein Analysis

649

Amino Acids

70.95

Weight (kDa)

6.83

Isoelectric Point (pI)

40.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	36 - 106	1.1e-18	RNA recognition motif
RRM_1	PF00076	124 - 191	1.3e-21	RNA recognition motif
RRM_1	PF00076	215 - 283	1e-22	RNA recognition motif
RRM_1	PF00076	318 - 386	1.1e-20	RNA recognition motif
MLLE	PF00658	562 - 627	3.5e-28	MLLE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49760 AT1G49760 AT4G34110
fragaria_vesca	FvH4_2g05720 FvH4_2g05720 FvH4_2g05720 FvH4_2g05720 FvH4_2g34040 FvH4_2g34040 FvH4_2g34040 FvH4_6g37220
malus_domestica	MD00G1138300.v1.1 MD05G1085100.v1.1 MD08G1096400.v1.1 MD15G1079100.v1.1
prunus_persica	Prupe.1G432200_v2.0.a1 Prupe.1G432200_v2.0.a1 Prupe.8G129400_v2.0.a1 Prupe.8G129400_v2.0.a1
pyrus_communis	pycom05g08430 pycom08g07840 pycom10g07970 pycom15g07370
rosa_chinensis	RchiOBHm_Chr6g0256591 RchiOBHm_Chr6g0308331
rosa_laevigata	RLG00000010649 RLG00000014752
rosa_multiflora	Rmu_sc0003012.1_g000007
rosa_roxburghii	Rroxscaffold_7G00160250 Rroxscaffold_7G00209190
rosa_rugosa	Rorug05G0564800 Rorug06G0366200 Rorug06G0366200
rosa_samantha	Rh6AG082800 Rh6AG475400 Rh6BG077400 Rh6CG072000 Rh6DG477300
rosa_wichuraiana	Rw6G007450 Rw6G041440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	104
Acc16I	TGCGCA	1 cut(s)	596
Acc36I	ACCTGC	1 cut(s)	1463
AccB1I	GGYRCC	2 cut(s)	80, 1240
AccB7I	CCANNNNNTGG	2 cut(s)	1346, 1586
AccBSI	CCGCTC	1 cut(s)	45
AciI	CCGC	6 cut(s)	45, 62, 75, 1546, 1596, 1772
AclI	AACGTT	1 cut(s)	54
AclWI	GGATC	3 cut(s)	779, 792, 1043
AcoI	YGGCCR	2 cut(s)	475, 1773
AcsI	RAATTY	3 cut(s)	616, 632, 693
AcuI	CTGAAG	2 cut(s)	914, 1119
AcyI	GRCGYC	2 cut(s)	81, 101
AfaI	GTAC	7 cut(s)	110, 152, 875, 956, 1021, 1271, 1544
AfeI	AGCGCT	2 cut(s)	250, 1915
AfiI	CCNNNNNNNGG	7 cut(s)	44, 223, 484, 1292, 1346, 1586, 1900
AflIII	ACRYGT	1 cut(s)	1537
AjiI	CACGTC	2 cut(s)	1466, 1538
AjnI	CCWGG	8 cut(s)	165, 1276, 1285, 1375, 1387, 1453, 1555, 1659
Alw21I	GWGCWC	4 cut(s)	212, 1117, 1285, 1399
Alw26I	GTCTC	1 cut(s)	413
Alw44I	GTGCAC	1 cut(s)	1395
AlwI	GGATC	3 cut(s)	779, 792, 1043
AlwNI	CAGNNNCTG	2 cut(s)	794, 1478
Ama87I	CYCGRG	2 cut(s)	1110, 1829
Aor51HI	AGCGCT	2 cut(s)	250, 1915
ApaLI	GTGCAC	1 cut(s)	1395
ApoI	RAATTY	3 cut(s)	616, 632, 693
ArsI	GACNNNNNNTTYG	2 cut(s)	1801, 1833
AspA2I	CCTAGG	2 cut(s)	1291, 1529
AspLEI	GCGC	5 cut(s)	83, 251, 597, 1563, 1916
AspS9I	GGNCC	7 cut(s)	47, 118, 337, 1444, 1475, 1628, 1804
AsuC2I	CCSGG	1 cut(s)	335
AsuHPI	GGTGA	5 cut(s)	199, 713, 1739, 1792, 1827
AsuNHI	GCTAGC	1 cut(s)	926
AvaI	CYCGRG	2 cut(s)	1110, 1829
AvaII	GGWCC	5 cut(s)	118, 337, 1475, 1628, 1804
AvrII	CCTAGG	2 cut(s)	1291, 1529
AxyI	CCTNAGG	1 cut(s)	255
BaeGI	GKGCMC	2 cut(s)	274, 1399
BaeI	ACNNNNGTAYC	2 cut(s)	1526, 1559
BalI	TGGCCA	1 cut(s)	477
BamHI	GGATCC	1 cut(s)	784
BanI	GGYRCC	2 cut(s)	80, 1240
BanII	GRGCYC	1 cut(s)	1117
Bbv12I	GWGCWC	4 cut(s)	212, 1117, 1285, 1399
BccI	CCATC	3 cut(s)	734, 1049, 1795
BciT130I	CCWGG	8 cut(s)	167, 1278, 1287, 1377, 1389, 1455, 1557, 1661
BclI	TGATCA	1 cut(s)	1918
BcnI	CCSGG	1 cut(s)	335
BcoDI	GTCTC	1 cut(s)	413
BfaI	CTAG	5 cut(s)	342, 927, 1292, 1530, 1925
BfmI	CTRYAG	3 cut(s)	196, 244, 1650
BfoI	RGCGCY	3 cut(s)	84, 252, 1917
BfuAI	ACCTGC	1 cut(s)	1463
BglI	GCCNNNNNGGC	1 cut(s)	1458
BlnI	CCTAGG	2 cut(s)	1291, 1529
Bme1390I	CCNGG	9 cut(s)	167, 335, 1278, 1287, 1377, 1389, 1455, 1557, 1661
Bme18I	GGWCC	5 cut(s)	118, 337, 1475, 1628, 1804
BmeT110I	CYCGRG	2 cut(s)	1110, 1829
BmgBI	CACGTC	2 cut(s)	1466, 1538
BmgT120I	GGNCC	7 cut(s)	47, 118, 337, 1444, 1475, 1628, 1804
BmrFI	CCNGG	9 cut(s)	167, 335, 1278, 1287, 1377, 1389, 1455, 1557, 1661
BmsI	GCATC	7 cut(s)	250, 457, 508, 543, 987, 1500, 1636
BmtI	GCTAGC	1 cut(s)	930
BoxI	GACNNNNGTC	1 cut(s)	1626
BpmI	CTGGAG	6 cut(s)	1260, 1269, 1308, 1608, 1778, 1817
BpuEI	CTTGAG	2 cut(s)	226, 980
BpuMI	CCSGG	1 cut(s)	335
BsaAI	YACGTR	1 cut(s)	1259
BsaHI	GRCGYC	2 cut(s)	81, 101
BsaJI	CCNNGG	7 cut(s)	1291, 1453, 1529, 1556, 1660, 1776, 1869
BsaWI	WCCGGW	1 cut(s)	362
BsaXI	ACNNNNNCTCC	2 cut(s)	1751, 1781
Bsc4I	CCNNNNNNNGG	7 cut(s)	44, 223, 484, 1292, 1346, 1586, 1900
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	7 cut(s)	279, 478, 478, 572, 720, 1229, 1789
Bse21I	CCTNAGG	1 cut(s)	255
Bse3DI	GCAATG	1 cut(s)	410
BseBI	CCWGG	8 cut(s)	167, 1278, 1287, 1377, 1389, 1455, 1557, 1661
BseDI	CCNNGG	7 cut(s)	1291, 1453, 1529, 1556, 1660, 1776, 1869
BseGI	GGATG	6 cut(s)	265, 523, 558, 745, 976, 1879
BseLI	CCNNNNNNNGG	7 cut(s)	44, 223, 484, 1292, 1346, 1586, 1900
BseMI	GCAATG	1 cut(s)	410
BseMII	CTCAG	8 cut(s)	20, 101, 269, 539, 878, 1113, 1223, 1871
BseNI	ACTGG	7 cut(s)	279, 478, 478, 572, 720, 1229, 1789
BseRI	GAGGAG	1 cut(s)	243
BseSI	GKGCMC	2 cut(s)	274, 1399
BsgI	GTGCAG	1 cut(s)	1491
BshNI	GGYRCC	2 cut(s)	80, 1240
BsiHKAI	GWGCWC	4 cut(s)	212, 1117, 1285, 1399
BsiHKCI	CYCGRG	2 cut(s)	1110, 1829
BsiSI	CCGG	4 cut(s)	72, 334, 363, 1670
BslFI	GGGAC	6 cut(s)	131, 215, 350, 623, 1548, 1614
BslI	CCNNNNNNNGG	7 cut(s)	44, 223, 484, 1292, 1346, 1586, 1900
BsmAI	GTCTC	1 cut(s)	413
BsmBI	CGTCTC	1 cut(s)	413
BsmFI	GGGAC	6 cut(s)	131, 215, 350, 623, 1548, 1614
BsmI	GAATGC	1 cut(s)	1606
BsoBI	CYCGRG	2 cut(s)	1110, 1829
Bsp1286I	GDGCHC	5 cut(s)	212, 274, 1117, 1285, 1399
Bsp1407I	TGTACA	1 cut(s)	954
Bsp143I	GATC	6 cut(s)	154, 218, 784, 831, 1048, 1918
Bsp19I	CCATGG	1 cut(s)	1869
BspACI	CCGC	6 cut(s)	45, 62, 75, 1546, 1596, 1772
BspCNI	CTCAG	8 cut(s)	19, 100, 268, 538, 877, 1114, 1222, 1872
BspMAI	CTGCAG	2 cut(s)	200, 1654
BspMI	ACCTGC	1 cut(s)	1463
BspOI	GCTAGC	1 cut(s)	930
BspPI	GGATC	3 cut(s)	779, 792, 1043
BspT107I	GGYRCC	2 cut(s)	80, 1240
BsrBI	CCGCTC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	410
BsrFI	RCCGGY	1 cut(s)	71
BsrGI	TGTACA	1 cut(s)	954
BsrI	ACTGG	7 cut(s)	279, 478, 478, 572, 720, 1229, 1789
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	7 cut(s)	1291, 1453, 1529, 1556, 1660, 1776, 1869
BssMI	GATC	6 cut(s)	154, 218, 784, 831, 1048, 1918
BssNI	GRCGYC	2 cut(s)	81, 101
BssT1I	CCWWGG	4 cut(s)	1291, 1529, 1776, 1869
Bst2UI	CCWGG	8 cut(s)	167, 1278, 1287, 1377, 1389, 1455, 1557, 1661
Bst4CI	ACNGT	1 cut(s)	1024
Bst6I	CTCTTC	1 cut(s)	1179
BstACI	GRCGYC	2 cut(s)	81, 101
BstAPI	GCANNNNNTGC	4 cut(s)	1372, 1501, 1522, 1525
BstAUI	TGTACA	1 cut(s)	954
BstBAI	YACGTR	1 cut(s)	1259
BstC8I	GCNNGC	8 cut(s)	43, 73, 599, 928, 1151, 1604, 1790, 1902
BstDEI	CTNAG	8 cut(s)	6, 87, 255, 525, 864, 1122, 1209, 1880
BstDSI	CCRYGG	1 cut(s)	1869
BstEII	GGTNACC	1 cut(s)	1355
BstF5I	GGATG	6 cut(s)	265, 523, 558, 745, 976, 1879
BstH2I	RGCGCY	3 cut(s)	84, 252, 1917
BstHHI	GCGC	5 cut(s)	83, 251, 597, 1563, 1916
BstKTI	GATC	6 cut(s)	157, 221, 787, 834, 1051, 1921
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	6 cut(s)	154, 218, 784, 831, 1048, 1918
BstNI	CCWGG	8 cut(s)	167, 1278, 1287, 1377, 1389, 1455, 1557, 1661
BstNSI	RCATGY	3 cut(s)	1570, 1606, 1792
BstPAI	GACNNNNGTC	1 cut(s)	1626
BstPI	GGTNACC	1 cut(s)	1355
BstSCI	CCNGG	9 cut(s)	165, 333, 1276, 1285, 1375, 1387, 1453, 1555, 1659
BstSFI	CTRYAG	3 cut(s)	196, 244, 1650
BstSLI	GKGCMC	2 cut(s)	274, 1399
BstX2I	RGATCY	1 cut(s)	784
BstYI	RGATCY	1 cut(s)	784
Bsu36I	CCTNAGG	1 cut(s)	255
BtgI	CCRYGG	1 cut(s)	1869
BtrI	CACGTC	2 cut(s)	1466, 1538
BtsCI	GGATG	6 cut(s)	265, 523, 558, 745, 976, 1879
BtsIMutI	CAGTG	5 cut(s)	272, 296, 471, 727, 988
BveI	ACCTGC	1 cut(s)	1463
Cac8I	GCNNGC	8 cut(s)	43, 73, 599, 928, 1151, 1604, 1790, 1902
CaiI	CAGNNNCTG	2 cut(s)	794, 1478
CfoI	GCGC	5 cut(s)	83, 251, 597, 1563, 1916
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	7 cut(s)	47, 118, 337, 1444, 1475, 1628, 1804
CseI	GACGC	1 cut(s)	821
CsiI	ACCWGGT	1 cut(s)	165
Csp6I	GTAC	7 cut(s)	109, 151, 874, 955, 1020, 1270, 1543
CviQI	GTAC	7 cut(s)	109, 151, 874, 955, 1020, 1270, 1543
DdeI	CTNAG	8 cut(s)	6, 87, 255, 525, 864, 1122, 1209, 1880
DinI	GGCGCC	1 cut(s)	82
DpnI	GATC	6 cut(s)	156, 220, 786, 833, 1050, 1920
DpnII	GATC	6 cut(s)	154, 218, 784, 831, 1048, 1918
EaeI	YGGCCR	2 cut(s)	475, 1773
Eam1104I	CTCTTC	1 cut(s)	1179
EarI	CTCTTC	1 cut(s)	1179
Ecl136II	GAGCTC	1 cut(s)	1115
Eco130I	CCWWGG	4 cut(s)	1291, 1529, 1776, 1869
Eco147I	AGGCCT	2 cut(s)	1290, 1387
Eco24I	GRGCYC	1 cut(s)	1117
Eco47I	GGWCC	5 cut(s)	118, 337, 1475, 1628, 1804
Eco47III	AGCGCT	2 cut(s)	250, 1915
Eco53kI	GAGCTC	1 cut(s)	1115
Eco57I	CTGAAG	2 cut(s)	914, 1119
Eco81I	CCTNAGG	1 cut(s)	255
Eco88I	CYCGRG	2 cut(s)	1110, 1829
Eco91I	GGTNACC	1 cut(s)	1355
EcoICRI	GAGCTC	1 cut(s)	1115
EcoO109I	RGGNCCY	4 cut(s)	118, 337, 1475, 1628
EcoO65I	GGTNACC	1 cut(s)	1355
EcoRII	CCWGG	8 cut(s)	165, 1276, 1285, 1375, 1387, 1453, 1555, 1659
EcoT14I	CCWWGG	4 cut(s)	1291, 1529, 1776, 1869
EcoT22I	ATGCAT	1 cut(s)	1608
EcoT38I	GRGCYC	1 cut(s)	1117
EgeI	GGCGCC	1 cut(s)	82
EheI	GGCGCC	1 cut(s)	82
ErhI	CCWWGG	4 cut(s)	1291, 1529, 1776, 1869
Esp3I	CGTCTC	1 cut(s)	413
FaqI	GGGAC	6 cut(s)	131, 215, 350, 623, 1548, 1614
FauNDI	CATATG	2 cut(s)	1521, 1618
FbaI	TGATCA	1 cut(s)	1918
FokI	GGATG	6 cut(s)	272, 530, 565, 752, 983, 1886
FriOI	GRGCYC	1 cut(s)	1117
FspBI	CTAG	5 cut(s)	342, 927, 1292, 1530, 1925
FspI	TGCGCA	1 cut(s)	596
GlaI	GCGC	5 cut(s)	82, 250, 596, 1562, 1915
GsuI	CTGGAG	6 cut(s)	1260, 1269, 1308, 1608, 1778, 1817
HaeII	RGCGCY	3 cut(s)	84, 252, 1917
HapII	CCGG	4 cut(s)	72, 334, 363, 1670
HgaI	GACGC	1 cut(s)	821
HhaI	GCGC	5 cut(s)	83, 251, 597, 1563, 1916
Hin1I	GRCGYC	2 cut(s)	81, 101
Hin6I	GCGC	5 cut(s)	81, 249, 595, 1561, 1914
HinP1I	GCGC	5 cut(s)	81, 249, 595, 1561, 1914
HincII	GTYRAC	5 cut(s)	241, 775, 811, 1750, 1935
HindII	GTYRAC	5 cut(s)	241, 775, 811, 1750, 1935
HinfI	GANTC	7 cut(s)	10, 140, 382, 665, 1590, 1766, 1832
HpaI	GTTAAC	1 cut(s)	1935
HpaII	CCGG	4 cut(s)	72, 334, 363, 1670
HphI	GGTGA	5 cut(s)	199, 713, 1739, 1792, 1827
Hpy166II	GTNNAC	8 cut(s)	241, 704, 775, 811, 1397, 1543, 1750, 1935
Hpy188I	TCNGA	7 cut(s)	9, 285, 528, 664, 867, 1012, 1881
Hpy8I	GTNNAC	8 cut(s)	241, 704, 775, 811, 1397, 1543, 1750, 1935
Hpy99I	CGWCG	4 cut(s)	103, 106, 839, 1467
HpyAV	CCTTC	7 cut(s)	740, 819, 835, 889, 913, 1254, 1849
HpyCH4III	ACNGT	1 cut(s)	1024
HpyCH4IV	ACGT	8 cut(s)	54, 101, 111, 237, 422, 1258, 1465, 1537
HpyF3I	CTNAG	8 cut(s)	6, 87, 255, 525, 864, 1122, 1209, 1880
HpySE526I	ACGT	8 cut(s)	54, 101, 111, 237, 422, 1258, 1465, 1537
Hsp92I	GRCGYC	2 cut(s)	81, 101
HspAI	GCGC	5 cut(s)	81, 249, 595, 1561, 1914
KasI	GGCGCC	1 cut(s)	80
KflI	GGGWCCC	2 cut(s)	337, 1628
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
Ksp22I	TGATCA	1 cut(s)	1918
KspAI	GTTAAC	1 cut(s)	1935
Kzo9I	GATC	6 cut(s)	154, 218, 784, 831, 1048, 1918
LmnI	GCTCC	4 cut(s)	256, 1258, 1288, 1759
LweI	GCATC	7 cut(s)	250, 457, 508, 543, 987, 1500, 1636
MabI	ACCWGGT	1 cut(s)	165
MaeI	CTAG	5 cut(s)	342, 927, 1292, 1530, 1925
MaeII	ACGT	8 cut(s)	54, 101, 111, 237, 422, 1258, 1465, 1537
MaeIII	GTNAC	6 cut(s)	133, 233, 1200, 1355, 1780, 1833
MalI	GATC	6 cut(s)	156, 220, 786, 833, 1050, 1920
MbiI	CCGCTC	1 cut(s)	45
MboI	GATC	6 cut(s)	154, 218, 784, 831, 1048, 1918
MboII	GAAGA	6 cut(s)	420, 689, 841, 880, 1112, 1196
MfeI	CAATTG	1 cut(s)	396
MflI	RGATCY	1 cut(s)	784
MhlI	GDGCHC	5 cut(s)	212, 274, 1117, 1285, 1399
MlsI	TGGCCA	1 cut(s)	477
MluCI	AATT	9 cut(s)	396, 503, 616, 632, 693, 949, 1001, 1301, 1332
MluNI	TGGCCA	1 cut(s)	477
Mly113I	GGCGCC	1 cut(s)	81
MlyI	GAGTC	4 cut(s)	134, 1599, 1775, 1841
Mox20I	TGGCCA	1 cut(s)	477
Mph1103I	ATGCAT	1 cut(s)	1608
MreI	CGCCGGCG	1 cut(s)	71
MroNI	GCCGGC	1 cut(s)	71
MscI	TGGCCA	1 cut(s)	477
MseI	TTAA	6 cut(s)	545, 561, 621, 636, 1382, 1934
Msp20I	TGGCCA	1 cut(s)	477
MspA1I	CMGCKG	3 cut(s)	148, 1756, 1772
MspI	CCGG	4 cut(s)	72, 334, 363, 1670
MspR9I	CCNGG	9 cut(s)	167, 335, 1278, 1287, 1377, 1389, 1455, 1557, 1661
MunI	CAATTG	1 cut(s)	396
Mva1269I	GAATGC	1 cut(s)	1606
MvaI	CCWGG	8 cut(s)	167, 1278, 1287, 1377, 1389, 1455, 1557, 1661
NaeI	GCCGGC	1 cut(s)	73
NarI	GGCGCC	1 cut(s)	81
NciI	CCSGG	1 cut(s)	335
NcoI	CCATGG	1 cut(s)	1869
NdeI	CATATG	2 cut(s)	1521, 1618
NdeII	GATC	6 cut(s)	154, 218, 784, 831, 1048, 1918
NgoMIV	GCCGGC	1 cut(s)	71
NheI	GCTAGC	1 cut(s)	926
NmuCI	GTSAC	2 cut(s)	1780, 1833
NsbI	TGCGCA	1 cut(s)	596
NsiI	ATGCAT	1 cut(s)	1608
NspI	RCATGY	3 cut(s)	1570, 1606, 1792
PaeI	GCATGC	2 cut(s)	1606, 1792
PaeR7I	CTCGAG	2 cut(s)	1110, 1829
PceI	AGGCCT	2 cut(s)	1290, 1387
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PctI	GAATGC	1 cut(s)	1606
PdiI	GCCGGC	1 cut(s)	73
PfeI	GAWTC	3 cut(s)	10, 382, 665
PflMI	CCANNNNNTGG	2 cut(s)	1346, 1586
PleI	GAGTC	4 cut(s)	134, 1598, 1774, 1840
PluTI	GGCGCC	1 cut(s)	84
PpsI	GAGTC	4 cut(s)	134, 1598, 1774, 1840
Ppu21I	YACGTR	1 cut(s)	1259
PpuMI	RGGWCCY	4 cut(s)	118, 337, 1475, 1628
PshAI	GACNNNNGTC	1 cut(s)	1626
Psp124BI	GAGCTC	1 cut(s)	1117
Psp1406I	AACGTT	1 cut(s)	54
Psp5II	RGGWCCY	4 cut(s)	118, 337, 1475, 1628
Psp6I	CCWGG	8 cut(s)	165, 1276, 1285, 1375, 1387, 1453, 1555, 1659
PspEI	GGTNACC	1 cut(s)	1355
PspGI	CCWGG	8 cut(s)	165, 1276, 1285, 1375, 1387, 1453, 1555, 1659
PspPI	GGNCC	7 cut(s)	47, 118, 337, 1444, 1475, 1628, 1804
PspPPI	RGGWCCY	4 cut(s)	118, 337, 1475, 1628
PspXI	VCTCGAGB	2 cut(s)	1110, 1829
PsrI	GAACNNNNNNTAC	4 cut(s)	143, 175, 1012, 1044
PstI	CTGCAG	2 cut(s)	200, 1654
PstNI	CAGNNNCTG	2 cut(s)	794, 1478
PsuI	RGATCY	1 cut(s)	784
PvuII	CAGCTG	2 cut(s)	148, 1756
RsaI	GTAC	7 cut(s)	110, 152, 875, 956, 1021, 1271, 1544
RsaNI	GTAC	7 cut(s)	109, 151, 874, 955, 1020, 1270, 1543
SacI	GAGCTC	1 cut(s)	1117
SaqAI	TTAA	6 cut(s)	545, 561, 621, 636, 1382, 1934
Sau3AI	GATC	6 cut(s)	154, 218, 784, 831, 1048, 1918
Sau96I	GGNCC	7 cut(s)	47, 118, 337, 1444, 1475, 1628, 1804
SchI	GAGTC	4 cut(s)	134, 1599, 1775, 1841
ScrFI	CCNGG	9 cut(s)	167, 335, 1278, 1287, 1377, 1389, 1455, 1557, 1661
SduI	GDGCHC	5 cut(s)	212, 274, 1117, 1285, 1399
SexAI	ACCWGGT	1 cut(s)	165
SfaNI	GCATC	7 cut(s)	250, 457, 508, 543, 987, 1500, 1636
SfcI	CTRYAG	3 cut(s)	196, 244, 1650
SfoI	GGCGCC	1 cut(s)	82
Sfr274I	CTCGAG	2 cut(s)	1110, 1829
SgrAI	CRCCGGYG	1 cut(s)	71
SinI	GGWCC	5 cut(s)	118, 337, 1475, 1628, 1804
SlaI	CTCGAG	2 cut(s)	1110, 1829
SmlI	CTYRAG	4 cut(s)	205, 995, 1110, 1829
SmoI	CTYRAG	4 cut(s)	205, 995, 1110, 1829
SphI	GCATGC	2 cut(s)	1606, 1792
Sse9I	AATT	9 cut(s)	396, 503, 616, 632, 693, 949, 1001, 1301, 1332
SseBI	AGGCCT	2 cut(s)	1290, 1387
SsiI	CCGC	6 cut(s)	45, 62, 75, 1546, 1596, 1772
SspDI	GGCGCC	1 cut(s)	80
SspI	AATATT	1 cut(s)	442
SspMI	CTAG	5 cut(s)	342, 927, 1292, 1530, 1925
SstI	GAGCTC	1 cut(s)	1117
StuI	AGGCCT	2 cut(s)	1290, 1387
StyD4I	CCNGG	9 cut(s)	165, 333, 1276, 1285, 1375, 1387, 1453, 1555, 1659
StyI	CCWWGG	4 cut(s)	1291, 1529, 1776, 1869
TaaI	ACNGT	1 cut(s)	1024
TaiI	ACGT	8 cut(s)	57, 104, 114, 240, 425, 1261, 1468, 1540
TaqI	TCGA	5 cut(s)	98, 123, 834, 1111, 1830
TaqII	GACCGA	2 cut(s)	161, 1826
TasI	AATT	9 cut(s)	396, 503, 616, 632, 693, 949, 1001, 1301, 1332
TatI	WGTACW	1 cut(s)	954
TauI	GCSGC	3 cut(s)	48, 65, 1775
TfiI	GAWTC	3 cut(s)	10, 382, 665
Tru1I	TTAA	6 cut(s)	545, 561, 621, 636, 1382, 1934
Tru9I	TTAA	6 cut(s)	545, 561, 621, 636, 1382, 1934
TscAI	CASTG	5 cut(s)	279, 303, 478, 727, 988
TseFI	GTSAC	2 cut(s)	1780, 1833
Tsp45I	GTSAC	2 cut(s)	1780, 1833
TspDTI	ATGAA	4 cut(s)	932, 1002, 1020, 1142
TspGWI	ACGGA	3 cut(s)	627, 689, 1729
TspRI	CASTG	5 cut(s)	279, 303, 478, 727, 988
Van91I	CCANNNNNTGG	2 cut(s)	1346, 1586
VneI	GTGCAC	1 cut(s)	1395
VpaK11BI	GGWCC	5 cut(s)	118, 337, 1475, 1628, 1804
XapI	RAATTY	3 cut(s)	616, 632, 693
XceI	RCATGY	3 cut(s)	1570, 1606, 1792
XhoI	CTCGAG	2 cut(s)	1110, 1829
XmaJI	CCTAGG	2 cut(s)	1291, 1529
XspI	CTAG	5 cut(s)	342, 927, 1292, 1530, 1925
ZraI	GACGTC	1 cut(s)	102
Zsp2I	ATGCAT	1 cut(s)	1608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.