Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0002657

Physical Location & Seq

Genomic Coordinates Forward (+)

6332850 .. 6335866

Gene Structure 3017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g07840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1950 bp

ATGGCTCAGATTCAAGTTCAGCACCAGCAGCAGCCTCCTGTGAGCGGCCCGAACGTTGTGGCGGCGAACGCCGGCGGTGGCCCCCCGCAGTTTGTTTCGACGTCGCTGTACGTTGGGGATCTCGACCAGAATGTAACCGACTCGCAGCTGTACGATCTGTTCAACCAGGTCGGTCAGGTCGTGTCGGTGAGGGTCTGCAGGGACTTGAGCACTCATCGATCTCTCGGCTATGGTTACGTCAACTATAGCGGTCCTCAGGATGCTGCAAGGGCACTGGAAGTTCTGAACTTCACTCCACTGAATAACAAATCAATCAGGATTATGTATTCGCACCGGGACCCTAGTATTAGAAAGAGTGGAACCGGAAACATATTTATCAAGAATCTGGACAAGGCAATTGACCACAAAGCATTGCATGAGACGTTTTCTTCTTTTGGAAATATTCTTTCTTGCAAGATAGCCACCGATGCCACTGGCCAGTCAAAGGGCTATGGTTTTGTGCAATTTGATAGTGAGGAAGCTGCTCAGAGTGCAATAGATAAGTTAAATGGGATGCTGCTTAATGATAAGCCAGTATTTGTAGGACACTTTCTCCGCAAGCAGGAGAGGGATGGAAATTTTAGCAAGACTAAATTTAACAATGTCTATGTCAAGAATATATCCGAATCTACAACGGAAGATGAATTGAACAAAATTTTTGGTGAACATGGACAAATAACCAGTGTTGTGGTGATGAGGGATGGGGAAGGCAAATCAAGGTGTTTCGGTTTTGTCAACTTTGAGGATCCAGAAGCTGCTGCTAAAGCTGTTGACGCTTTGAATGGAAAGAAGATCGACGAGAATTTGGAGTGGTATGTTGGGAAAGCTCAGAAGAAGTACGAGAGAGAGCTTGAACTGAAGGAGAGATTTGAGCAGAGCATGAAGGAAGCTAGTGATAAGTTTCAAGGTGTCAATTTGTACATCAAGAACTTGGATGACAGCATCAGTGATGAAAAACTCAAGGAATTGTTCTCGGAGTATGGTACTGTTAGTTCATGCAAGGTTATGCGTGATCCTGATGGAAACAGCAGAGGTTCTGGTTTTGTTGCCTTTTCAACTGCTGAAGAAGCTTCTCGAGCTCTTGTTGAGATGAATGGCAAAATGGTTGTTAGCAAGCCTCTGTATGTTGCACTTGCACAAAGGAAAGAAGAGAGGAAAGCAAGGTTACAGGCTCAGTTTTCTCAAATGAGGCCAGTTGCTATGGCACCTTCAGTGGCTCCACGTATGCCAATGTACCCTCCAGGTGCTCCAGGCCTCGGGCAACAATTTATGTATGGACAAGCACCTCCAGCGATAATTCCTCCACAAGCTGGATTTGGTTACCAACAGCAGCTTGTGCCTGGATTAAGGCCTGGTGGTGCACCAATGCCAAACTTCTTTGTTCCAATGGTTCAGCAGGGTCAGCAGGGCCAACGCCCAGGAGGTCGACGTGGTGCAGGTCCTGTGCAACCAAACCAGCAGCCTGTGCCAATGATGCAGCAGCATATGCTGCCTAGGGGACGTGTGTACCGCTATCCACCTGGTCGCAACATGCAGGAAGTTCCATTTTCTGGAGTCGGCAGTGGCATGCATTCAGTTCCATATGACATGGGTCCCATTCCTATGCGTGATGCTGCAGGAGGCCAGGGTGTTCCGGCTTTGGCTACTGCCCTTGCAAATGCTTCAACTGAACAGCAACGGACGATGCTTGGTGAAGCCCTATATCCCCTCGTTGACCAGCTGGAGCATGAATCAGCAGCTAAGGTGACTGGCATGCTTCTGGAGATGGACCAAACCGAAGTTTTGCATTTGCTCGAGTCACCAGAGGCTCTAAAGGCGAAGGTTGCAGAGGCCATGGATGTTCTTAGGAATGTTGCCCAACAGCAGGCTAACAGCAGCGCTGATCAACTAGCTTCACTAACTCTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006412 GO:0006413 GO:0006417 GO:0006446 GO:0006518 GO:0006807 GO:0006950 GO:0006970 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009628 GO:0009651 GO:0009889 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031329 GO:0032268 GO:0034248 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0060211 GO:0060255 GO:0061013 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:1900151 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1903311 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

PABP RRM_1

Protein Analysis

650

Amino Acids

71.12

Weight (kDa)

6.46

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	36 - 106	2.3e-18	RNA recognition motif
RRM_1	PF00076	124 - 191	8.1e-22	RNA recognition motif
RRM_1	PF00076	215 - 280	2.9e-22	RNA recognition motif
RRM_1	PF00076	319 - 387	4.7e-20	RNA recognition motif
MLLE	PF00658	563 - 628	3.5e-28	MLLE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49760 AT1G49760 AT4G34110
fragaria_vesca	FvH4_2g05720 FvH4_2g05720 FvH4_2g05720 FvH4_2g05720 FvH4_2g34040 FvH4_2g34040 FvH4_2g34040 FvH4_6g37220
malus_domestica	MD00G1138300.v1.1 MD05G1085100.v1.1 MD08G1096400.v1.1 MD15G1079100.v1.1
prunus_persica	Prupe.1G432200_v2.0.a1 Prupe.1G432200_v2.0.a1 Prupe.8G129400_v2.0.a1 Prupe.8G129400_v2.0.a1
pyrus_communis	pycom05g08430 pycom08g07840 pycom10g07970 pycom15g07370
rosa_chinensis	RchiOBHm_Chr6g0256591 RchiOBHm_Chr6g0308331
rosa_laevigata	RLG00000010649 RLG00000014752
rosa_multiflora	Rmu_sc0003012.1_g000007
rosa_roxburghii	Rroxscaffold_7G00160250 Rroxscaffold_7G00209190
rosa_rugosa	Rorug05G0564800 Rorug06G0366200 Rorug06G0366200
rosa_samantha	Rh6AG082800 Rh6AG475400 Rh6BG077400 Rh6CG072000 Rh6DG477300
rosa_wichuraiana	Rw6G007450 Rw6G041440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	104
Acc36I	ACCTGC	1 cut(s)	1466
AccB1I	GGYRCC	1 cut(s)	1243
AccB7I	CCANNNNNTGG	2 cut(s)	1349, 1589
AccBSI	CCGCTC	1 cut(s)	45
AccI	GTMKAC	1 cut(s)	1465
AciI	CCGC	7 cut(s)	45, 62, 75, 86, 249, 595, 1549
AclI	AACGTT	1 cut(s)	54
AclWI	GGATC	4 cut(s)	126, 779, 792, 1046
AcoI	YGGCCR	1 cut(s)	475
AcsI	RAATTY	4 cut(s)	616, 632, 693, 841
AcuI	CTGAAG	3 cut(s)	917, 1122, 1233
AcyI	GRCGYC	1 cut(s)	101
AfaI	GTAC	7 cut(s)	110, 152, 878, 959, 1024, 1274, 1547
AfeI	AGCGCT	1 cut(s)	1918
AfiI	CCNNNNNNNGG	7 cut(s)	44, 484, 601, 1295, 1349, 1589, 1903
AflIII	ACRYGT	1 cut(s)	1540
AgsI	TTSAA	9 cut(s)	14, 163, 688, 820, 893, 944, 1095, 1704, 1946
AjiI	CACGTC	2 cut(s)	1469, 1541
AjnI	CCWGG	8 cut(s)	165, 1279, 1288, 1378, 1390, 1456, 1558, 1662
Alw21I	GWGCWC	4 cut(s)	212, 1120, 1288, 1402
Alw26I	GTCTC	1 cut(s)	413
Alw44I	GTGCAC	1 cut(s)	1398
AlwI	GGATC	4 cut(s)	126, 779, 792, 1046
AlwNI	CAGNNNCTG	2 cut(s)	794, 1481
Ama87I	CYCGRG	3 cut(s)	1113, 1295, 1832
Aor51HI	AGCGCT	1 cut(s)	1918
AoxI	GGCC	9 cut(s)	46, 79, 475, 1229, 1291, 1388, 1447, 1660, 1869
ApaLI	GTGCAC	1 cut(s)	1398
ApoI	RAATTY	4 cut(s)	616, 632, 693, 841
AspA2I	CCTAGG	1 cut(s)	1532
AspLEI	GCGC	1 cut(s)	1919
AspS9I	GGNCC	8 cut(s)	47, 80, 251, 337, 1447, 1478, 1631, 1807
AsuC2I	CCSGG	1 cut(s)	335
AsuHPI	GGTGA	6 cut(s)	199, 713, 742, 1742, 1795, 1830
AvaI	CYCGRG	3 cut(s)	1113, 1295, 1832
AvaII	GGWCC	5 cut(s)	251, 337, 1478, 1631, 1807
AvrII	CCTAGG	1 cut(s)	1532
AxyI	CCTNAGG	1 cut(s)	255
BaeGI	GKGCMC	2 cut(s)	274, 1402
BaeI	ACNNNNGTAYC	2 cut(s)	1529, 1562
BalI	TGGCCA	1 cut(s)	477
BamHI	GGATCC	1 cut(s)	784
BanI	GGYRCC	1 cut(s)	1243
BanII	GRGCYC	1 cut(s)	1120
Bbv12I	GWGCWC	4 cut(s)	212, 1120, 1288, 1402
BccI	CCATC	4 cut(s)	605, 734, 1052, 1798
BciT130I	CCWGG	8 cut(s)	167, 1281, 1290, 1380, 1392, 1458, 1560, 1664
BclI	TGATCA	1 cut(s)	1921
BcnI	CCSGG	1 cut(s)	335
BcoDI	GTCTC	1 cut(s)	413
BfaI	CTAG	4 cut(s)	342, 930, 1533, 1928
BfmI	CTRYAG	3 cut(s)	196, 244, 1653
BfoI	RGCGCY	1 cut(s)	1920
BfuAI	ACCTGC	1 cut(s)	1466
BlnI	CCTAGG	1 cut(s)	1532
Bme1390I	CCNGG	9 cut(s)	167, 335, 1281, 1290, 1380, 1392, 1458, 1560, 1664
Bme18I	GGWCC	5 cut(s)	251, 337, 1478, 1631, 1807
BmeT110I	CYCGRG	3 cut(s)	1113, 1295, 1832
BmgBI	CACGTC	2 cut(s)	1469, 1541
BmgT120I	GGNCC	8 cut(s)	47, 80, 251, 337, 1447, 1478, 1631, 1807
BmiI	GGNNCC	9 cut(s)	82, 338, 339, 361, 786, 1245, 1257, 1632, 1633
BmrFI	CCNGG	9 cut(s)	167, 335, 1281, 1290, 1380, 1392, 1458, 1560, 1664
BmsI	GCATC	7 cut(s)	250, 457, 543, 990, 1503, 1639, 1713
BoxI	GACNNNNGTC	1 cut(s)	1629
BpmI	CTGGAG	6 cut(s)	1263, 1272, 1311, 1611, 1781, 1820
Bpu10I	CCTNAGC	1 cut(s)	1779
BpuEI	CTTGAG	2 cut(s)	226, 983
BpuMI	CCSGG	1 cut(s)	335
Bsa29I	ATCGAT	1 cut(s)	217
BsaAI	YACGTR	1 cut(s)	1262
BsaHI	GRCGYC	1 cut(s)	101
BsaJI	CCNNGG	5 cut(s)	1294, 1456, 1532, 1663, 1872
BsaWI	WCCGGW	1 cut(s)	362
BsaXI	ACNNNNNCTCC	2 cut(s)	576, 606
Bsc4I	CCNNNNNNNGG	7 cut(s)	44, 484, 601, 1295, 1349, 1589, 1903
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	7 cut(s)	279, 478, 478, 572, 720, 1232, 1792
Bse21I	CCTNAGG	1 cut(s)	255
Bse3DI	GCAATG	1 cut(s)	410
BseBI	CCWGG	8 cut(s)	167, 1281, 1290, 1380, 1392, 1458, 1560, 1664
BseCI	ATCGAT	1 cut(s)	217
BseDI	CCNNGG	5 cut(s)	1294, 1456, 1532, 1663, 1872
BseGI	GGATG	6 cut(s)	265, 558, 616, 745, 979, 1882
BseLI	CCNNNNNNNGG	7 cut(s)	44, 484, 601, 1295, 1349, 1589, 1903
BseMI	GCAATG	1 cut(s)	410
BseMII	CTCAG	5 cut(s)	20, 269, 539, 881, 1226
BseNI	ACTGG	7 cut(s)	279, 478, 478, 572, 720, 1232, 1792
BseSI	GKGCMC	2 cut(s)	274, 1402
BsgI	GTGCAG	1 cut(s)	1494
BshFI	GGCC	9 cut(s)	48, 81, 477, 1231, 1293, 1390, 1449, 1662, 1871
BshNI	GGYRCC	1 cut(s)	1243
BshVI	ATCGAT	1 cut(s)	217
BsiHKAI	GWGCWC	4 cut(s)	212, 1120, 1288, 1402
BsiHKCI	CYCGRG	3 cut(s)	1113, 1295, 1832
BsiSI	CCGG	4 cut(s)	72, 334, 363, 1673
BslFI	GGGAC	4 cut(s)	215, 350, 1551, 1617
BslI	CCNNNNNNNGG	7 cut(s)	44, 484, 601, 1295, 1349, 1589, 1903
BsmAI	GTCTC	1 cut(s)	413
BsmBI	CGTCTC	1 cut(s)	413
BsmFI	GGGAC	4 cut(s)	215, 350, 1551, 1617
BsmI	GAATGC	1 cut(s)	1609
BsnI	GGCC	9 cut(s)	48, 81, 477, 1231, 1293, 1390, 1449, 1662, 1871
BsoBI	CYCGRG	3 cut(s)	1113, 1295, 1832
Bsp1286I	GDGCHC	5 cut(s)	212, 274, 1120, 1288, 1402
Bsp1407I	TGTACA	1 cut(s)	957
Bsp143I	GATC	7 cut(s)	118, 154, 218, 784, 831, 1051, 1921
Bsp19I	CCATGG	1 cut(s)	1872
BspACI	CCGC	7 cut(s)	45, 62, 75, 86, 249, 595, 1549
BspANI	GGCC	9 cut(s)	48, 81, 477, 1231, 1293, 1390, 1449, 1662, 1871
BspCNI	CTCAG	5 cut(s)	19, 268, 538, 880, 1225
BspDI	ATCGAT	1 cut(s)	217
BspLI	GGNNCC	9 cut(s)	82, 338, 339, 361, 786, 1245, 1257, 1632, 1633
BspMAI	CTGCAG	2 cut(s)	200, 1657
BspMI	ACCTGC	1 cut(s)	1466
BspPI	GGATC	4 cut(s)	126, 779, 792, 1046
BspT107I	GGYRCC	1 cut(s)	1243
BsrBI	CCGCTC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	410
BsrFI	RCCGGY	1 cut(s)	71
BsrGI	TGTACA	1 cut(s)	957
BsrI	ACTGG	7 cut(s)	279, 478, 478, 572, 720, 1232, 1792
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	5 cut(s)	1294, 1456, 1532, 1663, 1872
BssMI	GATC	7 cut(s)	118, 154, 218, 784, 831, 1051, 1921
BssNI	GRCGYC	1 cut(s)	101
BssT1I	CCWWGG	2 cut(s)	1532, 1872
Bst2UI	CCWGG	8 cut(s)	167, 1281, 1290, 1380, 1392, 1458, 1560, 1664
Bst4CI	ACNGT	1 cut(s)	1027
Bst6I	CTCTTC	1 cut(s)	1182
BstACI	GRCGYC	1 cut(s)	101
BstAPI	GCANNNNNTGC	4 cut(s)	1375, 1504, 1525, 1528
BstAUI	TGTACA	1 cut(s)	957
BstBAI	YACGTR	1 cut(s)	1262
BstC8I	GCNNGC	6 cut(s)	73, 599, 1154, 1607, 1793, 1905
BstDEI	CTNAG	7 cut(s)	6, 255, 525, 867, 1212, 1779, 1883
BstDSI	CCRYGG	1 cut(s)	1872
BstEII	GGTNACC	1 cut(s)	1358
BstF5I	GGATG	6 cut(s)	265, 558, 616, 745, 979, 1882
BstH2I	RGCGCY	1 cut(s)	1920
BstHHI	GCGC	1 cut(s)	1919
BstKTI	GATC	7 cut(s)	121, 157, 221, 787, 834, 1054, 1924
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	7 cut(s)	118, 154, 218, 784, 831, 1051, 1921
BstNI	CCWGG	8 cut(s)	167, 1281, 1290, 1380, 1392, 1458, 1560, 1664
BstNSI	RCATGY	3 cut(s)	1573, 1609, 1795
BstPAI	GACNNNNGTC	1 cut(s)	1629
BstPI	GGTNACC	1 cut(s)	1358
BstSCI	CCNGG	9 cut(s)	165, 333, 1279, 1288, 1378, 1390, 1456, 1558, 1662
BstSFI	CTRYAG	3 cut(s)	196, 244, 1653
BstSLI	GKGCMC	2 cut(s)	274, 1402
BstX2I	RGATCY	2 cut(s)	118, 784
BstXI	CCANNNNNNTGG	1 cut(s)	727
BstYI	RGATCY	2 cut(s)	118, 784
Bsu15I	ATCGAT	1 cut(s)	217
Bsu36I	CCTNAGG	1 cut(s)	255
BsuRI	GGCC	9 cut(s)	48, 81, 477, 1231, 1293, 1390, 1449, 1662, 1871
BsuTUI	ATCGAT	1 cut(s)	217
BtgI	CCRYGG	1 cut(s)	1872
BtrI	CACGTC	2 cut(s)	1469, 1541
BtsCI	GGATG	6 cut(s)	265, 558, 616, 745, 979, 1882
BtsI	GCAGTG	1 cut(s)	1606
BtsIMutI	CAGTG	7 cut(s)	272, 296, 471, 727, 991, 1257, 1606
BveI	ACCTGC	1 cut(s)	1466
Cac8I	GCNNGC	6 cut(s)	73, 599, 1154, 1607, 1793, 1905
CaiI	CAGNNNCTG	2 cut(s)	794, 1481
CfoI	GCGC	1 cut(s)	1919
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	8 cut(s)	47, 80, 251, 337, 1447, 1478, 1631, 1807
ClaI	ATCGAT	1 cut(s)	217
CseI	GACGC	1 cut(s)	821
CsiI	ACCWGGT	2 cut(s)	165, 1558
Csp6I	GTAC	7 cut(s)	109, 151, 877, 958, 1023, 1273, 1546
CviQI	GTAC	7 cut(s)	109, 151, 877, 958, 1023, 1273, 1546
DdeI	CTNAG	7 cut(s)	6, 255, 525, 867, 1212, 1779, 1883
DpnI	GATC	7 cut(s)	120, 156, 220, 786, 833, 1053, 1923
DpnII	GATC	7 cut(s)	118, 154, 218, 784, 831, 1051, 1921
EaeI	YGGCCR	1 cut(s)	475
Eam1104I	CTCTTC	1 cut(s)	1182
EarI	CTCTTC	1 cut(s)	1182
Ecl136II	GAGCTC	1 cut(s)	1118
Eco130I	CCWWGG	2 cut(s)	1532, 1872
Eco147I	AGGCCT	2 cut(s)	1293, 1390
Eco24I	GRGCYC	1 cut(s)	1120
Eco47I	GGWCC	5 cut(s)	251, 337, 1478, 1631, 1807
Eco47III	AGCGCT	1 cut(s)	1918
Eco53kI	GAGCTC	1 cut(s)	1118
Eco57I	CTGAAG	3 cut(s)	917, 1122, 1233
Eco81I	CCTNAGG	1 cut(s)	255
Eco88I	CYCGRG	3 cut(s)	1113, 1295, 1832
Eco91I	GGTNACC	1 cut(s)	1358
EcoICRI	GAGCTC	1 cut(s)	1118
EcoO109I	RGGNCCY	3 cut(s)	337, 1478, 1631
EcoO65I	GGTNACC	1 cut(s)	1358
EcoRII	CCWGG	8 cut(s)	165, 1279, 1288, 1378, 1390, 1456, 1558, 1662
EcoT14I	CCWWGG	2 cut(s)	1532, 1872
EcoT22I	ATGCAT	1 cut(s)	1611
EcoT38I	GRGCYC	1 cut(s)	1120
ErhI	CCWWGG	2 cut(s)	1532, 1872
Esp3I	CGTCTC	1 cut(s)	413
FaqI	GGGAC	4 cut(s)	215, 350, 1551, 1617
FauI	CCCGC	1 cut(s)	93
FauNDI	CATATG	2 cut(s)	1524, 1621
FbaI	TGATCA	1 cut(s)	1921
FblI	GTMKAC	1 cut(s)	1465
FokI	GGATG	6 cut(s)	272, 565, 623, 752, 986, 1889
FriOI	GRGCYC	1 cut(s)	1120
FspBI	CTAG	4 cut(s)	342, 930, 1533, 1928
GlaI	GCGC	1 cut(s)	1918
GsuI	CTGGAG	6 cut(s)	1263, 1272, 1311, 1611, 1781, 1820
HaeII	RGCGCY	1 cut(s)	1920
HaeIII	GGCC	9 cut(s)	48, 81, 477, 1231, 1293, 1390, 1449, 1662, 1871
HapII	CCGG	4 cut(s)	72, 334, 363, 1673
HgaI	GACGC	1 cut(s)	821
HhaI	GCGC	1 cut(s)	1919
Hin1I	GRCGYC	1 cut(s)	101
Hin6I	GCGC	1 cut(s)	1917
HinP1I	GCGC	1 cut(s)	1917
HincII	GTYRAC	5 cut(s)	241, 775, 811, 1466, 1753
HindII	GTYRAC	5 cut(s)	241, 775, 811, 1466, 1753
HindIII	AAGCTT	1 cut(s)	1107
HinfI	GANTC	7 cut(s)	10, 140, 382, 665, 1593, 1769, 1835
HpaII	CCGG	4 cut(s)	72, 334, 363, 1673
HphI	GGTGA	6 cut(s)	199, 713, 742, 1742, 1795, 1830
Hpy166II	GTNNAC	8 cut(s)	241, 704, 775, 811, 1400, 1466, 1546, 1753
Hpy188I	TCNGA	6 cut(s)	9, 285, 528, 664, 870, 1015
Hpy8I	GTNNAC	8 cut(s)	241, 704, 775, 811, 1400, 1466, 1546, 1753
Hpy99I	CGWCG	4 cut(s)	103, 106, 839, 1470
HpyAV	CCTTC	5 cut(s)	740, 892, 916, 1257, 1852
HpyCH4III	ACNGT	1 cut(s)	1027
HpyCH4IV	ACGT	8 cut(s)	54, 101, 111, 237, 422, 1261, 1468, 1540
HpyF3I	CTNAG	7 cut(s)	6, 255, 525, 867, 1212, 1779, 1883
HpySE526I	ACGT	8 cut(s)	54, 101, 111, 237, 422, 1261, 1468, 1540
Hsp92I	GRCGYC	1 cut(s)	101
HspAI	GCGC	1 cut(s)	1917
KflI	GGGWCCC	2 cut(s)	337, 1631
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
Ksp22I	TGATCA	1 cut(s)	1921
Kzo9I	GATC	7 cut(s)	118, 154, 218, 784, 831, 1051, 1921
LmnI	GCTCC	3 cut(s)	1261, 1291, 1762
LweI	GCATC	7 cut(s)	250, 457, 543, 990, 1503, 1639, 1713
MabI	ACCWGGT	2 cut(s)	165, 1558
MaeI	CTAG	4 cut(s)	342, 930, 1533, 1928
MaeII	ACGT	8 cut(s)	54, 101, 111, 237, 422, 1261, 1468, 1540
MaeIII	GTNAC	6 cut(s)	133, 233, 1203, 1358, 1783, 1836
MalI	GATC	7 cut(s)	120, 156, 220, 786, 833, 1053, 1923
MbiI	CCGCTC	1 cut(s)	45
MboI	GATC	7 cut(s)	118, 154, 218, 784, 831, 1051, 1921
MboII	GAAGA	6 cut(s)	420, 689, 841, 883, 1115, 1199
MfeI	CAATTG	1 cut(s)	396
MflI	RGATCY	2 cut(s)	118, 784
MhlI	GDGCHC	5 cut(s)	212, 274, 1120, 1288, 1402
MlsI	TGGCCA	1 cut(s)	477
MluNI	TGGCCA	1 cut(s)	477
MlyI	GAGTC	3 cut(s)	134, 1602, 1844
Mox20I	TGGCCA	1 cut(s)	477
Mph1103I	ATGCAT	1 cut(s)	1611
MreI	CGCCGGCG	1 cut(s)	71
MroNI	GCCGGC	1 cut(s)	71
MscI	TGGCCA	1 cut(s)	477
MseI	TTAA	4 cut(s)	545, 561, 636, 1385
MslI	CAYNNNNRTG	1 cut(s)	1640
Msp20I	TGGCCA	1 cut(s)	477
MspA1I	CMGCKG	2 cut(s)	148, 1759
MspI	CCGG	4 cut(s)	72, 334, 363, 1673
MspR9I	CCNGG	9 cut(s)	167, 335, 1281, 1290, 1380, 1392, 1458, 1560, 1664
MunI	CAATTG	1 cut(s)	396
Mva1269I	GAATGC	1 cut(s)	1609
MvaI	CCWGG	8 cut(s)	167, 1281, 1290, 1380, 1392, 1458, 1560, 1664
NaeI	GCCGGC	1 cut(s)	73
NciI	CCSGG	1 cut(s)	335
NcoI	CCATGG	1 cut(s)	1872
NdeI	CATATG	2 cut(s)	1524, 1621
NdeII	GATC	7 cut(s)	118, 154, 218, 784, 831, 1051, 1921
NgoMIV	GCCGGC	1 cut(s)	71
NlaIV	GGNNCC	9 cut(s)	82, 338, 339, 361, 786, 1245, 1257, 1632, 1633
NmeAIII	GCCGAG	1 cut(s)	204
NmuCI	GTSAC	2 cut(s)	1783, 1836
NsiI	ATGCAT	1 cut(s)	1611
NspI	RCATGY	3 cut(s)	1573, 1609, 1795
PaeI	GCATGC	2 cut(s)	1609, 1795
PaeR7I	CTCGAG	2 cut(s)	1113, 1832
PceI	AGGCCT	2 cut(s)	1293, 1390
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PctI	GAATGC	1 cut(s)	1609
PdiI	GCCGGC	1 cut(s)	73
PfeI	GAWTC	4 cut(s)	10, 382, 665, 1769
PflMI	CCANNNNNTGG	2 cut(s)	1349, 1589
PleI	GAGTC	3 cut(s)	134, 1601, 1843
PpsI	GAGTC	3 cut(s)	134, 1601, 1843
Ppu21I	YACGTR	1 cut(s)	1262
PpuMI	RGGWCCY	3 cut(s)	337, 1478, 1631
PshAI	GACNNNNGTC	1 cut(s)	1629
Psp124BI	GAGCTC	1 cut(s)	1120
Psp1406I	AACGTT	1 cut(s)	54
Psp5II	RGGWCCY	3 cut(s)	337, 1478, 1631
Psp6I	CCWGG	8 cut(s)	165, 1279, 1288, 1378, 1390, 1456, 1558, 1662
PspEI	GGTNACC	1 cut(s)	1358
PspGI	CCWGG	8 cut(s)	165, 1279, 1288, 1378, 1390, 1456, 1558, 1662
PspN4I	GGNNCC	9 cut(s)	82, 338, 339, 361, 786, 1245, 1257, 1632, 1633
PspPI	GGNCC	8 cut(s)	47, 80, 251, 337, 1447, 1478, 1631, 1807
PspPPI	RGGWCCY	3 cut(s)	337, 1478, 1631
PspXI	VCTCGAGB	1 cut(s)	1832
PsrI	GAACNNNNNNTAC	4 cut(s)	143, 175, 1015, 1047
PstI	CTGCAG	2 cut(s)	200, 1657
PstNI	CAGNNNCTG	2 cut(s)	794, 1481
PsuI	RGATCY	2 cut(s)	118, 784
PvuII	CAGCTG	2 cut(s)	148, 1759
RsaI	GTAC	7 cut(s)	110, 152, 878, 959, 1024, 1274, 1547
RsaNI	GTAC	7 cut(s)	109, 151, 877, 958, 1023, 1273, 1546
RseI	CAYNNNNRTG	1 cut(s)	1640
SacI	GAGCTC	1 cut(s)	1120
SalI	GTCGAC	1 cut(s)	1464
SaqAI	TTAA	4 cut(s)	545, 561, 636, 1385
Sau3AI	GATC	7 cut(s)	118, 154, 218, 784, 831, 1051, 1921
Sau96I	GGNCC	8 cut(s)	47, 80, 251, 337, 1447, 1478, 1631, 1807
SchI	GAGTC	3 cut(s)	134, 1602, 1844
ScrFI	CCNGG	9 cut(s)	167, 335, 1281, 1290, 1380, 1392, 1458, 1560, 1664
SduI	GDGCHC	5 cut(s)	212, 274, 1120, 1288, 1402
SexAI	ACCWGGT	2 cut(s)	165, 1558
SfaNI	GCATC	7 cut(s)	250, 457, 543, 990, 1503, 1639, 1713
SfcI	CTRYAG	3 cut(s)	196, 244, 1653
Sfr274I	CTCGAG	2 cut(s)	1113, 1832
SgrAI	CRCCGGYG	1 cut(s)	71
SinI	GGWCC	5 cut(s)	251, 337, 1478, 1631, 1807
SlaI	CTCGAG	2 cut(s)	1113, 1832
SmiMI	CAYNNNNRTG	1 cut(s)	1640
SmlI	CTYRAG	4 cut(s)	205, 998, 1113, 1832
SmoI	CTYRAG	4 cut(s)	205, 998, 1113, 1832
SphI	GCATGC	2 cut(s)	1609, 1795
SseBI	AGGCCT	2 cut(s)	1293, 1390
SsiI	CCGC	7 cut(s)	45, 62, 75, 86, 249, 595, 1549
SspI	AATATT	1 cut(s)	442
SspMI	CTAG	4 cut(s)	342, 930, 1533, 1928
SstI	GAGCTC	1 cut(s)	1120
StuI	AGGCCT	2 cut(s)	1293, 1390
StyD4I	CCNGG	9 cut(s)	165, 333, 1279, 1288, 1378, 1390, 1456, 1558, 1662
StyI	CCWWGG	2 cut(s)	1532, 1872
TaaI	ACNGT	1 cut(s)	1027
TaiI	ACGT	8 cut(s)	57, 104, 114, 240, 425, 1264, 1471, 1543
TaqI	TCGA	7 cut(s)	98, 123, 217, 834, 1114, 1465, 1833
TaqII	GACCGA	1 cut(s)	161
TatI	WGTACW	1 cut(s)	957
TauI	GCSGC	2 cut(s)	48, 65
TfiI	GAWTC	4 cut(s)	10, 382, 665, 1769
Tru1I	TTAA	4 cut(s)	545, 561, 636, 1385
Tru9I	TTAA	4 cut(s)	545, 561, 636, 1385
TscAI	CASTG	7 cut(s)	279, 303, 478, 727, 991, 1257, 1606
TseFI	GTSAC	2 cut(s)	1783, 1836
Tsp45I	GTSAC	2 cut(s)	1783, 1836
TspDTI	ATGAA	6 cut(s)	696, 935, 1005, 1023, 1145, 1782
TspGWI	ACGGA	2 cut(s)	689, 1732
TspRI	CASTG	7 cut(s)	279, 303, 478, 727, 991, 1257, 1606
Van91I	CCANNNNNTGG	2 cut(s)	1349, 1589
VneI	GTGCAC	1 cut(s)	1398
VpaK11BI	GGWCC	5 cut(s)	251, 337, 1478, 1631, 1807
XapI	RAATTY	4 cut(s)	616, 632, 693, 841
XceI	RCATGY	3 cut(s)	1573, 1609, 1795
XhoI	CTCGAG	2 cut(s)	1113, 1832
XmaJI	CCTAGG	1 cut(s)	1532
XmiI	GTMKAC	1 cut(s)	1465
XspI	CTAG	4 cut(s)	342, 930, 1533, 1928
ZraI	GACGTC	1 cut(s)	102
Zsp2I	ATGCAT	1 cut(s)	1611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.