Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002657

Physical Location & Seq

Genomic Coordinates Reverse (-)

65683619 .. 65688038

Gene Structure 4420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG475400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1734 bp

ATGGCTCAGATTCAAGTTCAGCATCAGGTTCCGGTGACCGGTCCGAACGGCGTCGCTGTCAACACCGGTGGTCAGCAACAGATGGTGTCCACGTCGCTGTACGTCGGGGATCTGGAGCAGAATGTGACCGACTCGCAGCTCTACGATCTGTTCAATCAGGTCGGCCAGGTCGTCTCCGTTAGGGTTTGCAGGGACTTGTCCACTCGCAGATCTCTTGGTTATGGCTATGTTAATTATAGCAACCCTCAGGATGCTGCGAGGGCACTAGAAGTACTGAACTTCACTCCACTGAATGGCAAATCTATCAGAATTTGCTATTCTCTTCGGGACCCTACTATTAGAAAGAGTGGTACTGGGAATATTTTTATCAAGAATCTGGACAAGGGAATTGACCACAAGGCATTGCATGATACATTCTCGTCTTTTGGCAACATACTTTCTTGCAAGATAGCTACGGATGCTTCTGGGCAGTCTAAGGGCTATGGTTTTGTTCAATTTGACAAGGAAGAAGCTGCTGAGAGTGCCATAGAGAAGTTAAATGGCATGCTGTTAAATGATAAACAAGTGTACGTAGGTCCCTTTCTCCGTAGGCAGGAGAGGGATGGTGCTTTGCAGAAGACAAAATTTAGCAATGTCTACGTGAAAAATATATCAGAATCTACTACAGATGATGACTTGAAGAAAATTTTTGGTGAACATGGACCCATTACCAGTGCTGTAGTGATGAGGGATGGTGATGGCAAATCAAGGGGTTTTGGTTTTGTCAACTTTGATAACCCAGATGATGCTGCTAAAGCCGTTGAACTTCTGAATGGAAAGCAATTTGATGATAAGGAATGGTATGTTGGCAAAGCCCAGAAGAAGACTGAAAGAGAAGTTGAACTGAAGGAGAAATTTGAGCACAGCATGAAGGAAGCTAGTGATAAATTTCAAGGTGTGAATTTGTATATCAAGAACTTGGATGATAGCATTGATGATGAGAAACTTAAGGAAATATTCTCCGAGTATGGTACAGTCACATCTTGCAAGGTTATGCGTGACCCTGAAGGAGTTAGTCGTGGTTCTGGTTTTGTTGCCTTCTCGACTTCTGAAGAAGCTTCTCGAGCTCTTACGGAGATGAATGGCAAAATGGTTGTTAGCAAGCCTCTTTATGTTGCACTTGCACAACGGAAGGAAGAGAGAAGGGCAAGGTTGCAGGCTCAGTTTTCACAAATGAGGCCTGTTGCTATGGCTCCTTCAGTGGCTCCTCGTTTACCAATGTACCCTCCTGGTGCTCCAGGTCTAGGGCAACAATTTATGTATGGGCAAGGGCCTCCAACCATAATTCCACAGCAAGCTGGATTTGGTTACCAACAGCAACTTGTGCCAGGATTGAGGCCTGGAGGTGCTCCTATGCCAAACTTCTTTGTTCCAATGGTCCAACAGGGTCAGCAAGGCCAACGCCCAGGAGGTCGACGTGGGGCAGGTCCTGTGCAACAAAACCAGCAGCAAGTGCCACTGATGCCACAGCATATGATTCCAAGAGGACGTATGTATCGCTTTCCACCTGGTCGCAATATGCCGGAAGCTCCATTTTCTGGTGGTATGCTCTCAGTTCCATATGACATGGGTGGCATGCCTATGCGTGATCCTGCAGGGGGACGTGCTATGCCTGTTCCTGCTTTGGCTTCATCCCTTGCAAATGCTACACCGGAAGAACAGAGGACGGTAAGCCTTTCTCGACTTAACCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006412 GO:0006413 GO:0006417 GO:0006446 GO:0006518 GO:0006807 GO:0006950 GO:0006970 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009628 GO:0009651 GO:0009889 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031329 GO:0032268 GO:0034248 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0060211 GO:0060255 GO:0061013 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:1900151 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1903311 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

PABP RRM_1

Protein Analysis

577

Amino Acids

63.53

Weight (kDa)

9.1

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	33 - 103	1.3e-19	RNA recognition motif
RRM_1	PF00076	121 - 189	1.9e-21	RNA recognition motif
RRM_1	PF00076	212 - 280	8.2e-24	RNA recognition motif
RRM_1	PF00076	315 - 383	1.1e-19	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49760 AT1G49760 AT4G34110
fragaria_vesca	FvH4_2g05720 FvH4_2g05720 FvH4_2g05720 FvH4_2g05720 FvH4_2g34040 FvH4_2g34040 FvH4_2g34040 FvH4_6g37220
malus_domestica	MD00G1138300.v1.1 MD05G1085100.v1.1 MD08G1096400.v1.1 MD15G1079100.v1.1
prunus_persica	Prupe.1G432200_v2.0.a1 Prupe.1G432200_v2.0.a1 Prupe.8G129400_v2.0.a1 Prupe.8G129400_v2.0.a1
pyrus_communis	pycom05g08430 pycom08g07840 pycom10g07970 pycom15g07370
rosa_chinensis	RchiOBHm_Chr6g0256591 RchiOBHm_Chr6g0308331
rosa_laevigata	RLG00000010649 RLG00000014752
rosa_multiflora	Rmu_sc0003012.1_g000007
rosa_roxburghii	Rroxscaffold_7G00160250 Rroxscaffold_7G00209190
rosa_rugosa	Rorug05G0564800 Rorug06G0366200 Rorug06G0366200
rosa_samantha	Rh6AG082800 Rh6AG475400 Rh6BG077400 Rh6CG072000 Rh6DG477300
rosa_wichuraiana	Rw6G007450 Rw6G041440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1454
AccB7I	CCANNNNNTGG	2 cut(s)	293, 1577
AccI	GTMKAC	2 cut(s)	636, 1453
AclWI	GGATC	2 cut(s)	117, 1622
AcoI	YGGCCR	1 cut(s)	163
AcsI	RAATTY	6 cut(s)	309, 623, 684, 893, 926, 940
AcuI	CTGAAG	4 cut(s)	905, 1065, 1110, 1221
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	6 cut(s)	101, 273, 352, 569, 1012, 1262
AfiI	CCNNNNNNNGG	6 cut(s)	38, 293, 592, 1283, 1577, 1637
AflII	CTTAAG	1 cut(s)	986
AgeI	ACCGGT	2 cut(s)	38, 65
AgsI	TTSAA	7 cut(s)	14, 154, 494, 679, 803, 881, 932
AjiI	CACGTC	3 cut(s)	93, 1457, 1643
AjnI	CCWGG	7 cut(s)	165, 1267, 1276, 1366, 1378, 1444, 1546
AjuI	GAANNNNNNNTTGG	2 cut(s)	828, 860
AluBI	AGCT	8 cut(s)	139, 452, 512, 917, 1097, 1106, 1337, 1568
AluI	AGCT	8 cut(s)	139, 452, 512, 917, 1097, 1106, 1337, 1568
Alw21I	GWGCWC	4 cut(s)	903, 1108, 1276, 1390
Alw26I	GTCTC	1 cut(s)	178
AlwI	GGATC	2 cut(s)	117, 1622
AlwNI	CAGNNNCTG	1 cut(s)	1469
Ama87I	CYCGRG	1 cut(s)	1101
AoxI	GGCC	5 cut(s)	163, 1217, 1310, 1376, 1435
ApeKI	GCWGC	5 cut(s)	136, 254, 512, 788, 1486
ApoI	RAATTY	6 cut(s)	309, 623, 684, 893, 926, 940
AsiGI	ACCGGT	2 cut(s)	38, 65
AspS9I	GGNCC	7 cut(s)	41, 328, 575, 701, 1310, 1417, 1466
AsuHPI	GGTGA	3 cut(s)	46, 704, 746
AvaI	CYCGRG	1 cut(s)	1101
AvaII	GGWCC	6 cut(s)	41, 328, 575, 701, 1417, 1466
AxyI	CCTNAGG	1 cut(s)	246
BaeGI	GKGCMC	1 cut(s)	265
BaeI	ACNNNNGTAYC	4 cut(s)	1244, 1277, 1517, 1550
BanII	GRGCYC	1 cut(s)	1108
BbsI	GAAGAC	2 cut(s)	623, 869
Bbv12I	GWGCWC	4 cut(s)	903, 1108, 1276, 1390
BbvI	GCAGC	5 cut(s)	148, 241, 499, 775, 1498
BccI	CCATC	4 cut(s)	76, 596, 725, 731
BceAI	ACGGC	2 cut(s)	64, 782
BciT130I	CCWGG	7 cut(s)	167, 1269, 1278, 1368, 1380, 1446, 1548
BcoDI	GTCTC	1 cut(s)	178
BfaI	CTAG	3 cut(s)	266, 918, 1283
BfmI	CTRYAG	3 cut(s)	663, 717, 1632
BfrI	CTTAAG	1 cut(s)	986
BfuAI	ACCTGC	1 cut(s)	1454
BglII	AGATCT	1 cut(s)	209
BisI	GCNGC	5 cut(s)	137, 255, 513, 789, 1487
BlsI	GCNGC	5 cut(s)	138, 256, 514, 790, 1488
BmcAI	AGTACT	1 cut(s)	273
Bme1390I	CCNGG	7 cut(s)	167, 1269, 1278, 1368, 1380, 1446, 1548
Bme18I	GGWCC	6 cut(s)	41, 328, 575, 701, 1417, 1466
BmeT110I	CYCGRG	1 cut(s)	1101
BmgBI	CACGTC	3 cut(s)	93, 1457, 1643
BmgT120I	GGNCC	7 cut(s)	41, 328, 575, 701, 1310, 1417, 1466
BmiI	GGNNCC	7 cut(s)	30, 329, 330, 577, 703, 1233, 1245
BmrFI	CCNGG	7 cut(s)	167, 1269, 1278, 1368, 1380, 1446, 1548
BmrI	ACTGGG	1 cut(s)	363
BmsI	GCATC	5 cut(s)	31, 241, 448, 775, 1491
BmuI	ACTGGG	1 cut(s)	363
BpiI	GAAGAC	2 cut(s)	623, 869
BpmI	CTGGAG	3 cut(s)	134, 1260, 1401
BsaAI	YACGTR	2 cut(s)	571, 640
BsaHI	GRCGYC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	1444
BsaWI	WCCGGW	4 cut(s)	31, 38, 65, 1690
Bsc4I	CCNNNNNNNGG	6 cut(s)	38, 293, 592, 1283, 1577, 1637
Bse118I	RCCGGY	2 cut(s)	38, 65
Bse1I	ACTGG	2 cut(s)	358, 711
Bse21I	CCTNAGG	1 cut(s)	246
Bse3DI	GCAATG	2 cut(s)	401, 637
BseBI	CCWGG	7 cut(s)	167, 1269, 1278, 1368, 1380, 1446, 1548
BseDI	CCNNGG	1 cut(s)	1444
BseGI	GGATG	6 cut(s)	256, 463, 607, 736, 967, 1670
BseLI	CCNNNNNNNGG	6 cut(s)	38, 293, 592, 1283, 1577, 1637
BseMI	GCAATG	2 cut(s)	401, 637
BseMII	CTCAG	5 cut(s)	20, 260, 507, 1214, 1605
BseNI	ACTGG	2 cut(s)	358, 711
BseRI	GAGGAG	1 cut(s)	1236
BseSI	GKGCMC	1 cut(s)	265
BseXI	GCAGC	5 cut(s)	148, 241, 499, 775, 1498
BshFI	GGCC	5 cut(s)	165, 1219, 1312, 1378, 1437
BshTI	ACCGGT	2 cut(s)	38, 65
BsiHKAI	GWGCWC	4 cut(s)	903, 1108, 1276, 1390
BsiHKCI	CYCGRG	1 cut(s)	1101
BsiSI	CCGG	5 cut(s)	32, 39, 66, 1562, 1691
BslFI	GGGAC	4 cut(s)	206, 341, 561, 1653
BslI	CCNNNNNNNGG	6 cut(s)	38, 293, 592, 1283, 1577, 1637
BsmAI	GTCTC	1 cut(s)	178
BsmBI	CGTCTC	1 cut(s)	178
BsmFI	GGGAC	4 cut(s)	206, 341, 561, 1653
BsnI	GGCC	5 cut(s)	165, 1219, 1312, 1378, 1437
BsoBI	CYCGRG	1 cut(s)	1101
Bsp1286I	GDGCHC	5 cut(s)	265, 903, 1108, 1276, 1390
Bsp143I	GATC	4 cut(s)	109, 145, 209, 1627
BspANI	GGCC	5 cut(s)	165, 1219, 1312, 1378, 1437
BspCNI	CTCAG	5 cut(s)	19, 259, 508, 1213, 1604
BspLI	GGNNCC	7 cut(s)	30, 329, 330, 577, 703, 1233, 1245
BspMAI	CTGCAG	1 cut(s)	1636
BspMI	ACCTGC	1 cut(s)	1454
BspPI	GGATC	2 cut(s)	117, 1622
BspTI	CTTAAG	1 cut(s)	986
BsrDI	GCAATG	2 cut(s)	401, 637
BsrFI	RCCGGY	2 cut(s)	38, 65
BsrI	ACTGG	2 cut(s)	358, 711
BssAI	RCCGGY	2 cut(s)	38, 65
BssECI	CCNNGG	1 cut(s)	1444
BssMI	GATC	4 cut(s)	109, 145, 209, 1627
BssNI	GRCGYC	1 cut(s)	51
Bst2UI	CCWGG	7 cut(s)	167, 1269, 1278, 1368, 1380, 1446, 1548
Bst4CI	ACNGT	2 cut(s)	1015, 1708
Bst6I	CTCTTC	2 cut(s)	327, 1170
BstACI	GRCGYC	1 cut(s)	51
BstAFI	CTTAAG	1 cut(s)	986
BstAPI	GCANNNNNTGC	2 cut(s)	1363, 1492
BstBAI	YACGTR	2 cut(s)	571, 640
BstC8I	GCNNGC	5 cut(s)	545, 1142, 1197, 1335, 1616
BstDEI	CTNAG	6 cut(s)	6, 246, 474, 516, 1200, 1591
BstEII	GGTNACC	2 cut(s)	34, 1346
BstF5I	GGATG	6 cut(s)	256, 463, 607, 736, 967, 1670
BstKTI	GATC	4 cut(s)	112, 148, 212, 1630
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	4 cut(s)	109, 145, 209, 1627
BstMWI	GCNNNNNNNGC	8 cut(s)	260, 458, 521, 794, 1103, 1363, 1492, 1501
BstNI	CCWGG	7 cut(s)	167, 1269, 1278, 1368, 1380, 1446, 1548
BstNSI	RCATGY	2 cut(s)	547, 1618
BstPI	GGTNACC	2 cut(s)	34, 1346
BstSCI	CCNGG	7 cut(s)	165, 1267, 1276, 1366, 1378, 1444, 1546
BstSFI	CTRYAG	3 cut(s)	663, 717, 1632
BstSLI	GKGCMC	1 cut(s)	265
BstSNI	TACGTA	1 cut(s)	571
BstV1I	GCAGC	5 cut(s)	148, 241, 499, 775, 1498
BstV2I	GAAGAC	2 cut(s)	623, 869
BstX2I	RGATCY	2 cut(s)	109, 209
BstYI	RGATCY	2 cut(s)	109, 209
Bsu36I	CCTNAGG	1 cut(s)	246
BsuRI	GGCC	5 cut(s)	165, 1219, 1312, 1378, 1437
BtrI	CACGTC	3 cut(s)	93, 1457, 1643
BtsCI	GGATG	6 cut(s)	256, 463, 607, 736, 967, 1670
BtsIMutI	CAGTG	4 cut(s)	287, 718, 1245, 1496
BveI	ACCTGC	1 cut(s)	1454
Cac8I	GCNNGC	5 cut(s)	545, 1142, 1197, 1335, 1616
CaiI	CAGNNNCTG	1 cut(s)	1469
Cfr10I	RCCGGY	2 cut(s)	38, 65
Cfr13I	GGNCC	7 cut(s)	41, 328, 575, 701, 1310, 1417, 1466
CpoI	CGGWCCG	1 cut(s)	41
CseI	GACGC	1 cut(s)	40
CsiI	ACCWGGT	1 cut(s)	1546
Csp6I	GTAC	6 cut(s)	100, 272, 351, 568, 1011, 1261
CspAI	ACCGGT	2 cut(s)	38, 65
CspCI	CAANNNNNGTGG	2 cut(s)	49, 84
CspI	CGGWCCG	1 cut(s)	41
CviAII	CATG	6 cut(s)	407, 544, 698, 907, 1606, 1615
CviQI	GTAC	6 cut(s)	100, 272, 351, 568, 1011, 1261
DdeI	CTNAG	6 cut(s)	6, 246, 474, 516, 1200, 1591
DpnI	GATC	4 cut(s)	111, 147, 211, 1629
DpnII	GATC	4 cut(s)	109, 145, 209, 1627
EaeI	YGGCCR	1 cut(s)	163
Eam1104I	CTCTTC	2 cut(s)	327, 1170
EarI	CTCTTC	2 cut(s)	327, 1170
Ecl136II	GAGCTC	1 cut(s)	1106
Eco105I	TACGTA	1 cut(s)	571
Eco147I	AGGCCT	2 cut(s)	1219, 1378
Eco24I	GRGCYC	1 cut(s)	1108
Eco47I	GGWCC	6 cut(s)	41, 328, 575, 701, 1417, 1466
Eco53kI	GAGCTC	1 cut(s)	1106
Eco57I	CTGAAG	4 cut(s)	905, 1065, 1110, 1221
Eco81I	CCTNAGG	1 cut(s)	246
Eco88I	CYCGRG	1 cut(s)	1101
Eco91I	GGTNACC	2 cut(s)	34, 1346
EcoICRI	GAGCTC	1 cut(s)	1106
EcoO109I	RGGNCCY	4 cut(s)	328, 575, 1310, 1466
EcoO65I	GGTNACC	2 cut(s)	34, 1346
EcoRII	CCWGG	7 cut(s)	165, 1267, 1276, 1366, 1378, 1444, 1546
EcoT38I	GRGCYC	1 cut(s)	1108
Esp3I	CGTCTC	1 cut(s)	178
FaeI	CATG	6 cut(s)	410, 547, 701, 910, 1609, 1618
FaqI	GGGAC	4 cut(s)	206, 341, 561, 1653
FatI	CATG	6 cut(s)	406, 543, 697, 906, 1605, 1614
FauNDI	CATATG	2 cut(s)	1512, 1600
FblI	GTMKAC	2 cut(s)	636, 1453
Fnu4HI	GCNGC	5 cut(s)	137, 255, 513, 789, 1487
FokI	GGATG	6 cut(s)	263, 470, 614, 743, 974, 1657
FriOI	GRGCYC	1 cut(s)	1108
Fsp4HI	GCNGC	5 cut(s)	137, 255, 513, 789, 1487
FspBI	CTAG	3 cut(s)	266, 918, 1283
GluI	GCNGC	5 cut(s)	137, 255, 513, 789, 1487
GsuI	CTGGAG	3 cut(s)	134, 1260, 1401
HaeIII	GGCC	5 cut(s)	165, 1219, 1312, 1378, 1437
HapII	CCGG	5 cut(s)	32, 39, 66, 1562, 1691
HgaI	GACGC	1 cut(s)	40
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	6 cut(s)	410, 547, 701, 910, 1609, 1618
HincII	GTYRAC	3 cut(s)	61, 766, 1454
HindII	GTYRAC	3 cut(s)	61, 766, 1454
HindIII	AAGCTT	1 cut(s)	1095
HinfI	GANTC	5 cut(s)	10, 131, 373, 656, 1516
HpaII	CCGG	5 cut(s)	32, 39, 66, 1562, 1691
HphI	GGTGA	3 cut(s)	46, 704, 746
Hpy166II	GTNNAC	9 cut(s)	61, 90, 201, 568, 637, 695, 766, 1253, 1454
Hpy188I	TCNGA	7 cut(s)	9, 45, 308, 655, 810, 1003, 1090
Hpy188III	TCNNGA	9 cut(s)	113, 248, 326, 370, 377, 952, 1081, 1101, 1719
Hpy8I	GTNNAC	9 cut(s)	61, 90, 201, 568, 637, 695, 766, 1253, 1454
Hpy99I	CGWCG	4 cut(s)	56, 97, 107, 1458
HpyAV	CCTTC	7 cut(s)	880, 904, 1040, 1087, 1165, 1176, 1245
HpyCH4III	ACNGT	2 cut(s)	1015, 1708
HpyCH4IV	ACGT	7 cut(s)	92, 102, 570, 639, 1456, 1528, 1642
HpyF10VI	GCNNNNNNNGC	8 cut(s)	260, 458, 521, 794, 1103, 1363, 1492, 1501
HpyF3I	CTNAG	6 cut(s)	6, 246, 474, 516, 1200, 1591
HpySE526I	ACGT	7 cut(s)	92, 102, 570, 639, 1456, 1528, 1642
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	6 cut(s)	410, 547, 701, 910, 1609, 1618
KflI	GGGWCCC	1 cut(s)	328
Kzo9I	GATC	4 cut(s)	109, 145, 209, 1627
LmnI	GCTCC	6 cut(s)	115, 1237, 1249, 1279, 1393, 1573
Lsp1109I	GCAGC	5 cut(s)	148, 241, 499, 775, 1498
LweI	GCATC	5 cut(s)	31, 241, 448, 775, 1491
MabI	ACCWGGT	1 cut(s)	1546
MaeI	CTAG	3 cut(s)	266, 918, 1283
MaeII	ACGT	7 cut(s)	92, 102, 570, 639, 1456, 1528, 1642
MaeIII	GTNAC	5 cut(s)	34, 124, 1015, 1037, 1346
MalI	GATC	4 cut(s)	111, 147, 211, 1629
MboI	GATC	4 cut(s)	109, 145, 209, 1627
MboII	GAAGA	9 cut(s)	314, 518, 628, 691, 871, 874, 1103, 1187, 1706
MflI	RGATCY	2 cut(s)	109, 209
MhlI	GDGCHC	5 cut(s)	265, 903, 1108, 1276, 1390
MlyI	GAGTC	1 cut(s)	125
MmeI	TCCRAC	2 cut(s)	1340, 1444
MseI	TTAA	5 cut(s)	231, 536, 551, 987, 1725
MslI	CAYNNNNRTG	1 cut(s)	1619
MspCI	CTTAAG	1 cut(s)	986
MspI	CCGG	5 cut(s)	32, 39, 66, 1562, 1691
MspR9I	CCNGG	7 cut(s)	167, 1269, 1278, 1368, 1380, 1446, 1548
MvaI	CCWGG	7 cut(s)	167, 1269, 1278, 1368, 1380, 1446, 1548
MwoI	GCNNNNNNNGC	8 cut(s)	260, 458, 521, 794, 1103, 1363, 1492, 1501
NdeI	CATATG	2 cut(s)	1512, 1600
NdeII	GATC	4 cut(s)	109, 145, 209, 1627
NlaIII	CATG	6 cut(s)	410, 547, 701, 910, 1609, 1618
NlaIV	GGNNCC	7 cut(s)	30, 329, 330, 577, 703, 1233, 1245
NmuCI	GTSAC	4 cut(s)	34, 124, 1015, 1037
NspI	RCATGY	2 cut(s)	547, 1618
PaeI	GCATGC	2 cut(s)	547, 1618
PaeR7I	CTCGAG	1 cut(s)	1101
PceI	AGGCCT	2 cut(s)	1219, 1378
PcsI	WCGNNNNNNNCGW	2 cut(s)	168, 1726
PfeI	GAWTC	4 cut(s)	10, 373, 656, 1516
PflMI	CCANNNNNTGG	2 cut(s)	293, 1577
PinAI	ACCGGT	2 cut(s)	38, 65
PkrI	GCNGC	5 cut(s)	138, 256, 514, 790, 1488
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
Ppu21I	YACGTR	2 cut(s)	571, 640
PpuMI	RGGWCCY	3 cut(s)	328, 575, 1466
Psp124BI	GAGCTC	1 cut(s)	1108
Psp5II	RGGWCCY	3 cut(s)	328, 575, 1466
Psp6I	CCWGG	7 cut(s)	165, 1267, 1276, 1366, 1378, 1444, 1546
PspEI	GGTNACC	2 cut(s)	34, 1346
PspGI	CCWGG	7 cut(s)	165, 1267, 1276, 1366, 1378, 1444, 1546
PspN4I	GGNNCC	7 cut(s)	30, 329, 330, 577, 703, 1233, 1245
PspPI	GGNCC	7 cut(s)	41, 328, 575, 701, 1310, 1417, 1466
PspPPI	RGGWCCY	3 cut(s)	328, 575, 1466
PstI	CTGCAG	1 cut(s)	1636
PstNI	CAGNNNCTG	1 cut(s)	1469
PsuI	RGATCY	2 cut(s)	109, 209
RsaI	GTAC	6 cut(s)	101, 273, 352, 569, 1012, 1262
RsaNI	GTAC	6 cut(s)	100, 272, 351, 568, 1011, 1261
RseI	CAYNNNNRTG	1 cut(s)	1619
Rsr2I	CGGWCCG	1 cut(s)	41
RsrII	CGGWCCG	1 cut(s)	41
SacI	GAGCTC	1 cut(s)	1108
SalI	GTCGAC	1 cut(s)	1452
SaqAI	TTAA	5 cut(s)	231, 536, 551, 987, 1725
SatI	GCNGC	5 cut(s)	137, 255, 513, 789, 1487
Sau3AI	GATC	4 cut(s)	109, 145, 209, 1627
Sau96I	GGNCC	7 cut(s)	41, 328, 575, 701, 1310, 1417, 1466
SbfI	CCTGCAGG	1 cut(s)	1636
ScaI	AGTACT	1 cut(s)	273
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	7 cut(s)	167, 1269, 1278, 1368, 1380, 1446, 1548
SdaI	CCTGCAGG	1 cut(s)	1636
SduI	GDGCHC	5 cut(s)	265, 903, 1108, 1276, 1390
SexAI	ACCWGGT	1 cut(s)	1546
SfaNI	GCATC	5 cut(s)	31, 241, 448, 775, 1491
SfcI	CTRYAG	3 cut(s)	663, 717, 1632
Sfr274I	CTCGAG	1 cut(s)	1101
SgrAI	CRCCGGYG	1 cut(s)	65
SinI	GGWCC	6 cut(s)	41, 328, 575, 701, 1417, 1466
SlaI	CTCGAG	1 cut(s)	1101
SmiMI	CAYNNNNRTG	1 cut(s)	1619
SmlI	CTYRAG	2 cut(s)	986, 1101
SmoI	CTYRAG	2 cut(s)	986, 1101
SnaBI	TACGTA	1 cut(s)	571
SphI	GCATGC	2 cut(s)	547, 1618
Sse8387I	CCTGCAGG	1 cut(s)	1636
SseBI	AGGCCT	2 cut(s)	1219, 1378
SspI	AATATT	2 cut(s)	361, 996
SspMI	CTAG	3 cut(s)	266, 918, 1283
SstI	GAGCTC	1 cut(s)	1108
StuI	AGGCCT	2 cut(s)	1219, 1378
StyD4I	CCNGG	7 cut(s)	165, 1267, 1276, 1366, 1378, 1444, 1546
TaaI	ACNGT	2 cut(s)	1015, 1708
TaiI	ACGT	7 cut(s)	95, 105, 573, 642, 1459, 1531, 1645
TaqI	TCGA	4 cut(s)	1082, 1102, 1453, 1720
TaqII	GACCGA	1 cut(s)	143
TatI	WGTACW	1 cut(s)	271
TfiI	GAWTC	4 cut(s)	10, 373, 656, 1516
Tru1I	TTAA	5 cut(s)	231, 536, 551, 987, 1725
Tru9I	TTAA	5 cut(s)	231, 536, 551, 987, 1725
TscAI	CASTG	4 cut(s)	294, 718, 1245, 1503
TseFI	GTSAC	4 cut(s)	34, 124, 1015, 1037
TseI	GCWGC	5 cut(s)	136, 254, 512, 788, 1486
Tsp45I	GTSAC	4 cut(s)	34, 124, 1015, 1037
TspDTI	ATGAA	3 cut(s)	923, 1133, 1659
TspGWI	ACGGA	5 cut(s)	166, 470, 575, 1127, 1183
TspRI	CASTG	4 cut(s)	294, 718, 1245, 1503
Van91I	CCANNNNNTGG	2 cut(s)	293, 1577
Vha464I	CTTAAG	1 cut(s)	986
VpaK11BI	GGWCC	6 cut(s)	41, 328, 575, 701, 1417, 1466
XapI	RAATTY	6 cut(s)	309, 623, 684, 893, 926, 940
XceI	RCATGY	2 cut(s)	547, 1618
XhoI	CTCGAG	1 cut(s)	1101
XmiI	GTMKAC	2 cut(s)	636, 1453
XspI	CTAG	3 cut(s)	266, 918, 1283
ZrmI	AGTACT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.