Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0002657

Physical Location & Seq

Genomic Coordinates Reverse (-)

29898731 .. 29903964

Gene Structure 5234 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1138300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1959 bp

ATGGCGCAAGTTCAGCAGGTTCCGGCTCAGAATGCGAACGCGGCAGCTGTGGCGAACGGTGCCGGAGGAGCTAACCAGTTCGTGACGACGTCGCTTTACGTTGGCGATCTTGACCCGAACGTCACCGATTCGCAGCTGTACGACCTGTTCAACCAGCTGGGTCAGGTGGTTTCGGTTAGGGTTTGCAGGGACTTGTCCACTCGGAGGTCGCTTGGCTATGGCTATGTCAATTTTGCCAACCCGCAAGATGCTGCTAGGGCTTTGGATGTGTTGAACTTTACTCCTGTGAATGGAAGACCCATTAGGATTATGTACTCTCATCGTGATCCTACTATTCGCAAAAGTGGGGCTGGAAACATATTTATTAAGAATTTGGACAAAGCTATTGATCACAAAGCCTTGCATGATACATTTTCTGCGTTTGGAAACATCCTTTCTTGCAAGGTGGCTACTGATCCTGCTGGCCAGTCTAAAGGCTATGGCTTTGTACAATTTGACAATGAAGAAGCTGCCCAAAAGGCTATAGAGAAGTTGAATGGTATGCTTTTAAATGATAAGCAAGTTTATGTTGGTCCTTTCCTCCGGAAACAGGAAAGGGACAGTACTGCTGACAAGTCAAGATTCAACAATGTTTATGTAAAGAATCTGTCAGAGTCAACTACCGAGGAAGATTTGAAAAAAGTTTTTTCTGAATTTGGGATAACCACTAGTGAAGTGGTGATGAGGGATGGAGATGGAAAATCAAAGTGCTTTGGGTTTGTCAATTTTGAAAAGGCTGATGATGCTGCTAGAGCTGCTGAGGCTCTGAATGGAAAGAAATTTGATGATAAGGAGTGGTATGTTGGGAAGGCCCAGAAGAAATCTGAAAGGGAAAATGAGTTGAAACAACGATTTGAACAGAGTATGAAAGAGGCAGCAGACAAGTATCAAGGTGCGAACTTGTATGTTAAAAATTTGGATGATACCATTGCTGATGATAAACTTCAGGAGCTTTTCTCTCCATTTGGGACTATTGCCTCATGCAAGGTCATGCGAGACCCTAGTGGAATAAGTAGGGGATCAGGTTTTGTTGCATTCTCAACTCCTGAAGAGGCAAATAGAGCTCTATTGGAGATGAATGGAAAGATGATTGTAAGCAAACCTCTCTATGTTGCACTTGCACAACGAAAAGAAGATAGAAGAGCAAGGCTACAGGCTCAGTTTTCTCAAATGCGGCCTGTTGCAATGGCACCTTCTCGTATGCCAATGTACCCTCCTGGTGGTCCAGGTCTTGGACAACAAATATTCTACGGTCAAGGCCCACCTGCTATCATTCCCTCTCAGCCTGGATTCGGGTATCAGCAGCAGCTTGTTCCTGGTATGAGGCCTGGTGGGGCTCCATTGCCAAATTTCTTTGTGCCAATGGTTCAGCAGGGGCAGCAAGGGCAGCGTCCTGGTGGCAGACGTGCGGGCTCTGTCCAGCAAAACCAACAGCCAGTTCCGATAATGCAACAGCAGATGCTACCAAGGGGACGTGTCTACCGCTACCCATCTGGTCGCGGAATACCTGATGGTCCCATGCCTGGTGTTGCTGGAGGCATGTTTTCTGTACCATATGACATGGGCGGCGGTGGCAGCATGCCTATCCGTGATGCAGCAGTGTCCCAGCCAACAGTTCCAATAGGGGCTTTGGCTACTGCTCTTGCAAATGCTACACCAGAGCAGCAAAGAACGATGCTGGGTGAGAATCTTTACCCGCTCGTGGAACAGCTGGAACCTGACAATGCAGCGAAGGTTACAGGCATGCTTCTGGAGATGGATCAGACTGAGGTTCTCCATTTGCTCGAGTCGCCTGAAGCTTTGAAGGCAAAGGTAGCTGAGGCTATGGATGTTCTGAGGAACGTTGCTCAGCAACAGCAAGTTGGCAATGCAGCTGATCAACTTGGCTCATTGTCACTCAATGGGAACCTTGTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006412 GO:0006413 GO:0006417 GO:0006446 GO:0006518 GO:0006807 GO:0006950 GO:0006970 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009628 GO:0009651 GO:0009889 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031329 GO:0032268 GO:0034248 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0060211 GO:0060255 GO:0061013 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:1900151 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1903311 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

PABP RRM_1

Protein Analysis

653

Amino Acids

70.98

Weight (kDa)

8.38

Isoelectric Point (pI)

38.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	32 - 102	1.2e-20	RNA recognition motif
RRM_1	PF00076	120 - 188	1.7e-21	RNA recognition motif
RRM_1	PF00076	211 - 279	1.1e-21	RNA recognition motif
RRM_1	PF00076	314 - 382	5.8e-18	RNA recognition motif
MLLE	PF00658	560 - 625	4.4e-30	MLLE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49760 AT1G49760 AT4G34110
fragaria_vesca	FvH4_2g05720 FvH4_2g05720 FvH4_2g05720 FvH4_2g05720 FvH4_2g34040 FvH4_2g34040 FvH4_2g34040 FvH4_6g37220
malus_domestica	MD00G1138300.v1.1 MD05G1085100.v1.1 MD08G1096400.v1.1 MD15G1079100.v1.1
prunus_persica	Prupe.1G432200_v2.0.a1 Prupe.1G432200_v2.0.a1 Prupe.8G129400_v2.0.a1 Prupe.8G129400_v2.0.a1
pyrus_communis	pycom05g08430 pycom08g07840 pycom10g07970 pycom15g07370
rosa_chinensis	RchiOBHm_Chr6g0256591 RchiOBHm_Chr6g0308331
rosa_laevigata	RLG00000010649 RLG00000014752
rosa_multiflora	Rmu_sc0003012.1_g000007
rosa_roxburghii	Rroxscaffold_7G00160250 Rroxscaffold_7G00209190
rosa_rugosa	Rorug05G0564800 Rorug06G0366200 Rorug06G0366200
rosa_samantha	Rh6AG082800 Rh6AG475400 Rh6BG077400 Rh6CG072000 Rh6DG477300
rosa_wichuraiana	Rw6G007450 Rw6G041440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1312
AasI	GACNNNNNNGTC	1 cut(s)	119
AatII	GACGTC	1 cut(s)	92
Acc36I	ACCTGC	2 cut(s)	7, 1312
AccB1I	GGYRCC	2 cut(s)	59, 1228
AccB7I	CCANNNNNTGG	1 cut(s)	1271
AccBSI	CCGCTC	1 cut(s)	1738
AccI	GTMKAC	1 cut(s)	1518
AccII	CGCG	2 cut(s)	41, 1539
AccIII	TCCGGA	1 cut(s)	582
AciI	CCGC	9 cut(s)	41, 242, 1213, 1448, 1522, 1539, 1605, 1608, 1736
AclI	AACGTT	1 cut(s)	1881
AclWI	GGATC	4 cut(s)	320, 449, 1066, 1806
AcoI	YGGCCR	1 cut(s)	463
AcsI	RAATTY	5 cut(s)	370, 692, 818, 952, 1387
AcuI	CTGAAG	3 cut(s)	968, 1107, 1854
AcyI	GRCGYC	1 cut(s)	89
AfaI	GTAC	6 cut(s)	140, 314, 489, 604, 1250, 1590
AfiI	CCNNNNNNNGG	8 cut(s)	204, 290, 589, 1259, 1271, 1331, 1562, 1741
AflIII	ACRYGT	1 cut(s)	1513
AgsI	TTSAA	9 cut(s)	151, 274, 535, 625, 676, 770, 883, 896, 1843
AhlI	ACTAGT	1 cut(s)	707
AjiI	CACGTC	2 cut(s)	1445, 1514
AjnI	CCWGG	7 cut(s)	1255, 1264, 1324, 1354, 1366, 1432, 1561
AjuI	GAANNNNNNNTTGG	2 cut(s)	1461, 1493
Alw21I	GWGCWC	1 cut(s)	1105
Alw26I	GTCTC	1 cut(s)	1029
AlwI	GGATC	4 cut(s)	320, 449, 1066, 1806
Ama87I	CYCGRG	1 cut(s)	1823
Aor13HI	TCCGGA	1 cut(s)	582
AoxI	GGCC	5 cut(s)	463, 849, 1214, 1297, 1364
ApoI	RAATTY	5 cut(s)	370, 692, 818, 952, 1387
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	5 cut(s)	572, 850, 1262, 1298, 1553
AsuHPI	GGTGA	3 cut(s)	115, 730, 1733
AvaI	CYCGRG	1 cut(s)	1823
AvaII	GGWCC	3 cut(s)	572, 1262, 1553
BalI	TGGCCA	1 cut(s)	465
BanI	GGYRCC	2 cut(s)	59, 1228
BanII	GRGCYC	3 cut(s)	1105, 1378, 1454
BauI	CACGAG	1 cut(s)	1739
BbsI	GAAGAC	1 cut(s)	301
Bbv12I	GWGCWC	1 cut(s)	1105
BbvCI	CCTCAGC	2 cut(s)	798, 1857
BccI	CCATC	5 cut(s)	722, 728, 1537, 1544, 1789
BciT130I	CCWGG	7 cut(s)	1257, 1266, 1326, 1356, 1368, 1434, 1563
BclI	TGATCA	2 cut(s)	388, 1915
BcoDI	GTCTC	1 cut(s)	1029
BcuI	ACTAGT	1 cut(s)	707
BfaI	CTAG	4 cut(s)	255, 708, 789, 1041
BfmI	CTRYAG	2 cut(s)	522, 1190
BfuAI	ACCTGC	2 cut(s)	7, 1312
BglI	GCCNNNNNGGC	1 cut(s)	518
BlpI	GCTNAGC	1 cut(s)	1887
BmcAI	AGTACT	1 cut(s)	604
Bme1390I	CCNGG	7 cut(s)	1257, 1266, 1326, 1356, 1368, 1434, 1563
Bme18I	GGWCC	3 cut(s)	572, 1262, 1553
BmeT110I	CYCGRG	1 cut(s)	1823
BmgBI	CACGTC	2 cut(s)	1445, 1514
BmgT120I	GGNCC	5 cut(s)	572, 850, 1262, 1298, 1553
BmiI	GGNNCC	7 cut(s)	21, 61, 1230, 1377, 1555, 1755, 1946
BmrFI	CCNGG	7 cut(s)	1257, 1266, 1326, 1356, 1368, 1434, 1563
BmsI	GCATC	5 cut(s)	238, 772, 1488, 1621, 1704
BpiI	GAAGAC	1 cut(s)	301
BplI	GAGNNNNNCTC	2 cut(s)	980, 1012
BpmI	CTGGAG	2 cut(s)	1593, 1811
Bpu10I	CCTNAGC	2 cut(s)	798, 1857
Bpu1102I	GCTNAGC	1 cut(s)	1887
BsaHI	GRCGYC	1 cut(s)	89
BsaI	GGTCTC	1 cut(s)	1029
BsaJI	CCNNGG	2 cut(s)	663, 1505
BsaWI	WCCGGW	1 cut(s)	582
Bsc4I	CCNNNNNNNGG	8 cut(s)	204, 290, 589, 1259, 1271, 1331, 1562, 1741
Bse1I	ACTGG	3 cut(s)	76, 466, 1475
Bse3DI	GCAATG	4 cut(s)	966, 1230, 1379, 1912
BseAI	TCCGGA	1 cut(s)	582
BseBI	CCWGG	7 cut(s)	1257, 1266, 1326, 1356, 1368, 1434, 1563
BseDI	CCNNGG	2 cut(s)	663, 1505
BseGI	GGATG	5 cut(s)	271, 429, 733, 964, 1873
BseLI	CCNNNNNNNGG	8 cut(s)	204, 290, 589, 1259, 1271, 1331, 1562, 1741
BseMI	GCAATG	4 cut(s)	966, 1230, 1379, 1912
BseMII	CTCAG	8 cut(s)	41, 789, 1211, 1334, 1797, 1848, 1865, 1901
BseNI	ACTGG	3 cut(s)	76, 466, 1475
BseRI	GAGGAG	1 cut(s)	81
BseYI	CCCAGC	3 cut(s)	157, 1644, 1717
Bsh1236I	CGCG	2 cut(s)	41, 1539
BshFI	GGCC	5 cut(s)	465, 851, 1216, 1299, 1366
BshNI	GGYRCC	2 cut(s)	59, 1228
BsiHKAI	GWGCWC	1 cut(s)	1105
BsiHKCI	CYCGRG	1 cut(s)	1823
BsiSI	CCGG	3 cut(s)	23, 63, 583
BslFI	GGGAC	6 cut(s)	203, 611, 1021, 1524, 1539, 1627
BslI	CCNNNNNNNGG	8 cut(s)	204, 290, 589, 1259, 1271, 1331, 1562, 1741
BsmAI	GTCTC	1 cut(s)	1029
BsmFI	GGGAC	6 cut(s)	203, 611, 1021, 1524, 1539, 1627
BsmI	GAATGC	2 cut(s)	37, 1073
BsnI	GGCC	5 cut(s)	465, 851, 1216, 1299, 1366
Bso31I	GGTCTC	1 cut(s)	1029
BsoBI	CYCGRG	1 cut(s)	1823
Bsp1286I	GDGCHC	3 cut(s)	1105, 1378, 1454
Bsp13I	TCCGGA	1 cut(s)	582
Bsp1407I	TGTACA	1 cut(s)	487
Bsp143I	GATC	7 cut(s)	106, 325, 388, 454, 1058, 1798, 1915
Bsp1720I	GCTNAGC	1 cut(s)	1887
BspACI	CCGC	9 cut(s)	41, 242, 1213, 1448, 1522, 1539, 1605, 1608, 1736
BspANI	GGCC	5 cut(s)	465, 851, 1216, 1299, 1366
BspCNI	CTCAG	8 cut(s)	40, 790, 1210, 1333, 1798, 1849, 1866, 1900
BspEI	TCCGGA	1 cut(s)	582
BspFNI	CGCG	2 cut(s)	41, 1539
BspHI	TCATGA	1 cut(s)	1955
BspLI	GGNNCC	7 cut(s)	21, 61, 1230, 1377, 1555, 1755, 1946
BspMI	ACCTGC	2 cut(s)	7, 1312
BspPI	GGATC	4 cut(s)	320, 449, 1066, 1806
BspQI	GCTCTTC	1 cut(s)	1174
BspT107I	GGYRCC	2 cut(s)	59, 1228
BspTNI	GGTCTC	1 cut(s)	1029
BsrBI	CCGCTC	1 cut(s)	1738
BsrDI	GCAATG	4 cut(s)	966, 1230, 1379, 1912
BsrGI	TGTACA	1 cut(s)	487
BsrI	ACTGG	3 cut(s)	76, 466, 1475
BssECI	CCNNGG	2 cut(s)	663, 1505
BssMI	GATC	7 cut(s)	106, 325, 388, 454, 1058, 1798, 1915
BssNI	GRCGYC	1 cut(s)	89
BssSI	CACGAG	1 cut(s)	1739
BssT1I	CCWWGG	1 cut(s)	1505
Bst2BI	CACGAG	1 cut(s)	1739
Bst2UI	CCWGG	7 cut(s)	1257, 1266, 1326, 1356, 1368, 1434, 1563
Bst4CI	ACNGT	4 cut(s)	59, 602, 1292, 1654
Bst6I	CTCTTC	2 cut(s)	1083, 1174
BstACI	GRCGYC	1 cut(s)	89
BstAUI	TGTACA	1 cut(s)	487
BstC8I	GCNNGC	4 cut(s)	463, 1450, 1619, 1784
BstDEI	CTNAG	8 cut(s)	27, 798, 1197, 1320, 1806, 1857, 1874, 1887
BstF5I	GGATG	5 cut(s)	271, 429, 733, 964, 1873
BstFNI	CGCG	2 cut(s)	41, 1539
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	7 cut(s)	109, 328, 391, 457, 1061, 1801, 1918
BstMAI	GTCTC	1 cut(s)	1029
BstMBI	GATC	7 cut(s)	106, 325, 388, 454, 1058, 1798, 1915
BstNI	CCWGG	7 cut(s)	1257, 1266, 1326, 1356, 1368, 1434, 1563
BstNSI	RCATGY	3 cut(s)	1582, 1621, 1786
BstSCI	CCNGG	7 cut(s)	1255, 1264, 1324, 1354, 1366, 1432, 1561
BstSFI	CTRYAG	2 cut(s)	522, 1190
BstUI	CGCG	2 cut(s)	41, 1539
BstV2I	GAAGAC	1 cut(s)	301
BsuRI	GGCC	5 cut(s)	465, 851, 1216, 1299, 1366
BtrI	CACGTC	2 cut(s)	1445, 1514
BtsCI	GGATG	5 cut(s)	271, 429, 733, 964, 1873
BtsI	GCAGTG	1 cut(s)	1644
BtsIMutI	CAGTG	1 cut(s)	1644
BveI	ACCTGC	2 cut(s)	7, 1312
Cac8I	GCNNGC	4 cut(s)	463, 1450, 1619, 1784
CciI	TCATGA	1 cut(s)	1955
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	5 cut(s)	572, 850, 1262, 1298, 1553
CseI	GACGC	1 cut(s)	1418
Csp6I	GTAC	6 cut(s)	139, 313, 488, 603, 1249, 1589
CviAII	CATG	9 cut(s)	404, 1020, 1030, 1558, 1579, 1600, 1618, 1783, 1956
CviQI	GTAC	6 cut(s)	139, 313, 488, 603, 1249, 1589
DdeI	CTNAG	8 cut(s)	27, 798, 1197, 1320, 1806, 1857, 1874, 1887
DpnI	GATC	7 cut(s)	108, 327, 390, 456, 1060, 1800, 1917
DpnII	GATC	7 cut(s)	106, 325, 388, 454, 1058, 1798, 1915
DraI	TTTAAA	1 cut(s)	549
DrdI	GACNNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	119
EaeI	YGGCCR	1 cut(s)	463
Eam1104I	CTCTTC	2 cut(s)	1083, 1174
EarI	CTCTTC	2 cut(s)	1083, 1174
Ecl136II	GAGCTC	1 cut(s)	1103
Eco130I	CCWWGG	1 cut(s)	1505
Eco147I	AGGCCT	1 cut(s)	1366
Eco24I	GRGCYC	3 cut(s)	1105, 1378, 1454
Eco31I	GGTCTC	1 cut(s)	1029
Eco47I	GGWCC	3 cut(s)	572, 1262, 1553
Eco53kI	GAGCTC	1 cut(s)	1103
Eco57I	CTGAAG	3 cut(s)	968, 1107, 1854
Eco88I	CYCGRG	1 cut(s)	1823
EcoICRI	GAGCTC	1 cut(s)	1103
EcoRII	CCWGG	7 cut(s)	1255, 1264, 1324, 1354, 1366, 1432, 1561
EcoT14I	CCWWGG	1 cut(s)	1505
EcoT38I	GRGCYC	3 cut(s)	1105, 1378, 1454
ErhI	CCWWGG	1 cut(s)	1505
FaeI	CATG	9 cut(s)	407, 1023, 1033, 1561, 1582, 1603, 1621, 1786, 1959
FaqI	GGGAC	6 cut(s)	203, 611, 1021, 1524, 1539, 1627
FatI	CATG	9 cut(s)	403, 1019, 1029, 1557, 1578, 1599, 1617, 1782, 1955
FauI	CCCGC	3 cut(s)	249, 1441, 1743
FauNDI	CATATG	1 cut(s)	1594
FbaI	TGATCA	2 cut(s)	388, 1915
FblI	GTMKAC	1 cut(s)	1518
FokI	GGATG	5 cut(s)	278, 416, 740, 971, 1880
FriOI	GRGCYC	3 cut(s)	1105, 1378, 1454
FspBI	CTAG	4 cut(s)	255, 708, 789, 1041
GlaI	GCGC	1 cut(s)	6
GsaI	CCCAGC	3 cut(s)	161, 1648, 1721
GsuI	CTGGAG	2 cut(s)	1593, 1811
HaeIII	GGCC	5 cut(s)	465, 851, 1216, 1299, 1366
HapII	CCGG	3 cut(s)	23, 63, 583
HgaI	GACGC	1 cut(s)	1418
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	89
Hin1II	CATG	9 cut(s)	407, 1023, 1033, 1561, 1582, 1603, 1621, 1786, 1959
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	657
HindII	GTYRAC	1 cut(s)	657
HindIII	AAGCTT	1 cut(s)	1836
HinfI	GANTC	7 cut(s)	128, 621, 643, 653, 1329, 1726, 1826
HpaII	CCGG	3 cut(s)	23, 63, 583
HphI	GGTGA	3 cut(s)	115, 730, 1733
Hpy166II	GTNNAC	3 cut(s)	198, 657, 1519
Hpy188I	TCNGA	9 cut(s)	30, 204, 652, 691, 807, 865, 1482, 1803, 1875
Hpy188III	TCNNGA	9 cut(s)	82, 110, 323, 583, 618, 986, 1085, 1790, 1956
Hpy8I	GTNNAC	3 cut(s)	198, 657, 1519
Hpy99I	CGWCG	2 cut(s)	91, 94
HpyAV	CCTTC	4 cut(s)	841, 1242, 1765, 1837
HpyCH4III	ACNGT	4 cut(s)	59, 602, 1292, 1654
HpyCH4IV	ACGT	6 cut(s)	89, 99, 120, 1444, 1513, 1881
HpyF3I	CTNAG	8 cut(s)	27, 798, 1197, 1320, 1806, 1857, 1874, 1887
HpySE526I	ACGT	6 cut(s)	89, 99, 120, 1444, 1513, 1881
Hsp92I	GRCGYC	1 cut(s)	89
Hsp92II	CATG	9 cut(s)	407, 1023, 1033, 1561, 1582, 1603, 1621, 1786, 1959
HspAI	GCGC	1 cut(s)	5
Kpn2I	TCCGGA	1 cut(s)	582
Ksp22I	TGATCA	2 cut(s)	388, 1915
Kzo9I	GATC	7 cut(s)	106, 325, 388, 454, 1058, 1798, 1915
LguI	GCTCTTC	1 cut(s)	1174
LmnI	GCTCC	3 cut(s)	68, 988, 1381
LweI	GCATC	5 cut(s)	238, 772, 1488, 1621, 1704
MaeI	CTAG	4 cut(s)	255, 708, 789, 1041
MaeII	ACGT	6 cut(s)	89, 99, 120, 1444, 1513, 1881
MaeIII	GTNAC	4 cut(s)	82, 121, 1774, 1932
MalI	GATC	7 cut(s)	108, 327, 390, 456, 1060, 1800, 1917
MbiI	CCGCTC	1 cut(s)	1738
MboI	GATC	7 cut(s)	106, 325, 388, 454, 1058, 1798, 1915
MboII	GAAGA	7 cut(s)	306, 515, 680, 868, 1100, 1184, 1191
MhlI	GDGCHC	3 cut(s)	1105, 1378, 1454
MlsI	TGGCCA	1 cut(s)	465
MluCI	AATT	8 cut(s)	229, 370, 491, 692, 763, 818, 952, 1387
MluNI	TGGCCA	1 cut(s)	465
MlyI	GAGTC	2 cut(s)	662, 1835
Mox20I	TGGCCA	1 cut(s)	465
MroI	TCCGGA	1 cut(s)	582
MscI	TGGCCA	1 cut(s)	465
MseI	TTAA	3 cut(s)	366, 548, 948
Msp20I	TGGCCA	1 cut(s)	465
MspA1I	CMGCKG	5 cut(s)	47, 136, 157, 1750, 1913
MspI	CCGG	3 cut(s)	23, 63, 583
MspR9I	CCNGG	7 cut(s)	1257, 1266, 1326, 1356, 1368, 1434, 1563
Mva1269I	GAATGC	2 cut(s)	37, 1073
MvaI	CCWGG	7 cut(s)	1257, 1266, 1326, 1356, 1368, 1434, 1563
MvnI	CGCG	2 cut(s)	41, 1539
NdeI	CATATG	1 cut(s)	1594
NdeII	GATC	7 cut(s)	106, 325, 388, 454, 1058, 1798, 1915
NlaIII	CATG	9 cut(s)	407, 1023, 1033, 1561, 1582, 1603, 1621, 1786, 1959
NlaIV	GGNNCC	7 cut(s)	21, 61, 1230, 1377, 1555, 1755, 1946
NmuCI	GTSAC	3 cut(s)	82, 121, 1932
NspI	RCATGY	3 cut(s)	1582, 1621, 1786
PaeI	GCATGC	2 cut(s)	1621, 1786
PaeR7I	CTCGAG	1 cut(s)	1823
PagI	TCATGA	1 cut(s)	1955
PaqCI	CACCTGC	1 cut(s)	1312
PceI	AGGCCT	1 cut(s)	1366
PciSI	GCTCTTC	1 cut(s)	1174
PctI	GAATGC	2 cut(s)	37, 1073
PfeI	GAWTC	5 cut(s)	128, 621, 643, 1329, 1726
PflFI	GACNNNGTC	1 cut(s)	88
PflMI	CCANNNNNTGG	1 cut(s)	1271
PleI	GAGTC	2 cut(s)	661, 1834
PpsI	GAGTC	2 cut(s)	661, 1834
Psp124BI	GAGCTC	1 cut(s)	1105
Psp1406I	AACGTT	1 cut(s)	1881
Psp6I	CCWGG	7 cut(s)	1255, 1264, 1324, 1354, 1366, 1432, 1561
PspFI	CCCAGC	3 cut(s)	157, 1644, 1717
PspGI	CCWGG	7 cut(s)	1255, 1264, 1324, 1354, 1366, 1432, 1561
PspN4I	GGNNCC	7 cut(s)	21, 61, 1230, 1377, 1555, 1755, 1946
PspPI	GGNCC	5 cut(s)	572, 850, 1262, 1298, 1553
PspXI	VCTCGAGB	1 cut(s)	1823
PsrI	GAACNNNNNNTAC	2 cut(s)	131, 163
PsyI	GACNNNGTC	1 cut(s)	88
PvuII	CAGCTG	5 cut(s)	47, 136, 157, 1750, 1913
RsaI	GTAC	6 cut(s)	140, 314, 489, 604, 1250, 1590
RsaNI	GTAC	6 cut(s)	139, 313, 488, 603, 1249, 1589
SacI	GAGCTC	1 cut(s)	1105
SapI	GCTCTTC	1 cut(s)	1174
SaqAI	TTAA	3 cut(s)	366, 548, 948
Sau3AI	GATC	7 cut(s)	106, 325, 388, 454, 1058, 1798, 1915
Sau96I	GGNCC	5 cut(s)	572, 850, 1262, 1298, 1553
ScaI	AGTACT	1 cut(s)	604
SchI	GAGTC	2 cut(s)	662, 1835
ScrFI	CCNGG	7 cut(s)	1257, 1266, 1326, 1356, 1368, 1434, 1563
SduI	GDGCHC	3 cut(s)	1105, 1378, 1454
SfaNI	GCATC	5 cut(s)	238, 772, 1488, 1621, 1704
SfcI	CTRYAG	2 cut(s)	522, 1190
Sfr274I	CTCGAG	1 cut(s)	1823
SinI	GGWCC	3 cut(s)	572, 1262, 1553
SlaI	CTCGAG	1 cut(s)	1823
SmlI	CTYRAG	1 cut(s)	1823
SmoI	CTYRAG	1 cut(s)	1823
SpeI	ACTAGT	1 cut(s)	707
SphI	GCATGC	2 cut(s)	1621, 1786
Sse9I	AATT	8 cut(s)	229, 370, 491, 692, 763, 818, 952, 1387
SseBI	AGGCCT	1 cut(s)	1366
SsiI	CCGC	9 cut(s)	41, 242, 1213, 1448, 1522, 1539, 1605, 1608, 1736
SspI	AATATT	1 cut(s)	1284
SspMI	CTAG	4 cut(s)	255, 708, 789, 1041
SstI	GAGCTC	1 cut(s)	1105
StuI	AGGCCT	1 cut(s)	1366
StyD4I	CCNGG	7 cut(s)	1255, 1264, 1324, 1354, 1366, 1432, 1561
StyI	CCWWGG	1 cut(s)	1505
TaaI	ACNGT	4 cut(s)	59, 602, 1292, 1654
TaiI	ACGT	6 cut(s)	92, 102, 123, 1447, 1516, 1884
TaqI	TCGA	1 cut(s)	1824
TasI	AATT	8 cut(s)	229, 370, 491, 692, 763, 818, 952, 1387
TatI	WGTACW	3 cut(s)	312, 487, 602
TauI	GCSGC	3 cut(s)	44, 1216, 1608
TfiI	GAWTC	5 cut(s)	128, 621, 643, 1329, 1726
Tru1I	TTAA	3 cut(s)	366, 548, 948
Tru9I	TTAA	3 cut(s)	366, 548, 948
TscAI	CASTG	1 cut(s)	1644
TseFI	GTSAC	3 cut(s)	82, 121, 1932
Tsp45I	GTSAC	3 cut(s)	82, 121, 1932
TspDTI	ATGAA	4 cut(s)	516, 920, 1130, 1944
TspGWI	ACGGA	1 cut(s)	1616
TspRI	CASTG	1 cut(s)	1644
Tth111I	GACNNNGTC	1 cut(s)	88
Van91I	CCANNNNNTGG	1 cut(s)	1271
VpaK11BI	GGWCC	3 cut(s)	572, 1262, 1553
XapI	RAATTY	5 cut(s)	370, 692, 818, 952, 1387
XceI	RCATGY	3 cut(s)	1582, 1621, 1786
XcmI	CCANNNNNNNNNTGG	1 cut(s)	712
XhoI	CTCGAG	1 cut(s)	1823
XmiI	GTMKAC	1 cut(s)	1518
XspI	CTAG	4 cut(s)	255, 708, 789, 1041
ZraI	GACGTC	1 cut(s)	90
ZrmI	AGTACT	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.