Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002657

Physical Location & Seq

Genomic Coordinates Forward (+)

12242438 .. 12247431

Gene Structure 4994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G007450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1959 bp

ATGGCGCAAGCTCAGGTTCAGGGTCAGAATGCAAGCGCGGCGGCTGCGGCGGCGGCGGCGGCTAATGGTGGTGGGGCCAACCAGTTCGTGACGACGTCGCTTTACGTTGGGGATCTCGACCAGAACATTACGGATTCGCAGCTGTACGACCTGTTCAACCAGCTGGGTCAGGTCGTGTCTGTTAGGGTTTGCAGGGACTTGTCCACCCGGAGGTCGCTTGGTTACGGCTATGTCAATTATAGCAACCCGCAGGATGCTGCTAGGGCATTGGATGTGTTGAACTTCACTCCTGTAAATGGAAGGCCCATTAGGATCATGTACTCTCACCGTGATCCTAGTATCCGTAAAAGTGGGTCTGGAAATATATTTATTAAGAATTTGGACAAAGCTCTTGATCACAAAGCCTTGCATGATACATTTTCTTCATTTGGAAACATCCTTTCTTGCAAGGTGGCAACAGACTCCTCTGGCCAGTCAAAGGGCTATGGCTTTGTGCAATTTGATAATGAAGAAGCTGCCCAAAAAGCTATTGCAAAGTTGAATGGTATGCTTATAAATGATAAGCAAGTATTTGTAGGACCATTCCTCCGCAAACAGGAAAGGGAGGGTGTTGCTGACAAGTCAAAGTTCCAGAATGTTTATGTGAAGAATCTATCAGAATCGACTACTGAAGATGATTTTACCAAAATTTTTGGTGAATTTGGACCAATCACTAGCGTAGTGATCATGAGAGATCAAGATGGAAAATCAAAGTGCTTTGGATTTGTCAACTTTGATAATCCAGATGATGCTGCCAGAGCTGTTGAGGCTCTGAATGGAAAGAAATTTGATGATAAGGAGTGGTATGTTGGGAAGGCCCAGAAGAAATCTGAAAGGGAAAATGAATTGAAACTTCGATTTGAACAGAGCATGAAAGAGGCAGCAGACAAATATCAAGGAGCAAACTTGTATGTTAAAAATTTAGATGACAGCATAGTTGATGATAAACTTAAGGAGCTCTTCACTCCATTTGGCACAATTACCTCGTGTAAGGTCATGCGAGACCCCAACGGAGTAAGTAGGGGTTCCGGTTTTGTTGCATTCTCAACTCCTGAAGAGGCAAATAGAGCTCTGGCGGAGATGAATGGAAAAATGATTGTAAGCAAACCTCTCTATGTTGCACTTGCGCAACGAAAAGAAGATAGAAGAGCGAGGCTCCAGGCTCAGTTTTCTCAAATGCGGCCAGTTGCAATGGCACCTTCAGTTGCTCCTCGTATGCCAATGTACCCTCCTGGTGGTCCAGGTATTGGGCAGCAAATATTCTATGGTCAAGCCCCACCTGCTATCATTCCCTCCCAGCCTGGATTTGGATATCAGCAGCAGCTTGTTCCTGGTATGAGACCTGGCGGCGCTCCCATGCCAAACTTCTTTGTGCCAATGGTTCAGCAGGGGCAGCAAGGGCAGCGCCCTGGTGGCAGACGTGCAGGCCCTGCGCAGCAAAACCAGCAACCAGTTCCATTAATGCAACAGCAGATGCTTCCAAGAGGGCGTGTCTACCGTTACCCGTCTGCGCGCGCTCTGCCTGATGGTCCCATGCCTGGTGTTGGAGGCATGTTTTCTGTTCCATATGACTTGTCTGGCATGCCATTGCGTGATCCAGCACTGTCTCAGCCTGTTCCAATTGGGACTTTGGCTAGTGCCCTTGCAAATGCTACACCGGAGCAGCAAAGGACGATGCTGGGGGAGAATCTTTACCCACTGGTGGAACAGCTGGAACCTGACAATGCAGCGAAGGTTACTGGCATGCTTCTTGAGATGGATCAAACTGAGGTTCTGCATTTGCTCGAGTCACCCGAAGCTTTGAAAGCAAAGGTGGCTGAAGCTATGGAGGTTCTGAGGAATGTTGCTCAGCAGCAGCAAGCTGGCGGTGCAGCTGATCAACTAGCCTCATTGTCGCTCAATGATAATCTTGTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006412 GO:0006413 GO:0006417 GO:0006446 GO:0006518 GO:0006807 GO:0006950 GO:0006970 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009628 GO:0009651 GO:0009889 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031329 GO:0032268 GO:0034248 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0060211 GO:0060255 GO:0061013 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:1900151 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1903311 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

PABP RRM_1

Protein Analysis

652

Amino Acids

71.07

Weight (kDa)

8.38

Isoelectric Point (pI)

39.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	34 - 104	1.3e-19	RNA recognition motif
RRM_1	PF00076	122 - 189	3.3e-21	RNA recognition motif
RRM_1	PF00076	213 - 281	1.4e-24	RNA recognition motif
RRM_1	PF00076	316 - 384	1.8e-19	RNA recognition motif
MLLE	PF00658	560 - 625	4.3e-30	MLLE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49760 AT1G49760 AT4G34110
fragaria_vesca	FvH4_2g05720 FvH4_2g05720 FvH4_2g05720 FvH4_2g05720 FvH4_2g34040 FvH4_2g34040 FvH4_2g34040 FvH4_6g37220
malus_domestica	MD00G1138300.v1.1 MD05G1085100.v1.1 MD08G1096400.v1.1 MD15G1079100.v1.1
prunus_persica	Prupe.1G432200_v2.0.a1 Prupe.1G432200_v2.0.a1 Prupe.8G129400_v2.0.a1 Prupe.8G129400_v2.0.a1
pyrus_communis	pycom05g08430 pycom08g07840 pycom10g07970 pycom15g07370
rosa_chinensis	RchiOBHm_Chr6g0256591 RchiOBHm_Chr6g0308331
rosa_laevigata	RLG00000010649 RLG00000014752
rosa_multiflora	Rmu_sc0003012.1_g000007
rosa_roxburghii	Rroxscaffold_7G00160250 Rroxscaffold_7G00209190
rosa_rugosa	Rorug05G0564800 Rorug06G0366200 Rorug06G0366200
rosa_samantha	Rh6AG082800 Rh6AG475400 Rh6BG077400 Rh6CG072000 Rh6DG477300
rosa_wichuraiana	Rw6G007450 Rw6G041440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	554
AarI	CACCTGC	1 cut(s)	1327
AatII	GACGTC	1 cut(s)	98
Acc16I	TGCGCA	2 cut(s)	1167, 1473
Acc36I	ACCTGC	1 cut(s)	1327
AccB1I	GGYRCC	1 cut(s)	1234
AccB7I	CCANNNNNTGG	1 cut(s)	1286
AccI	GTMKAC	1 cut(s)	1533
AccII	CGCG	3 cut(s)	38, 1552, 1554
AclWI	GGATC	5 cut(s)	120, 320, 326, 1628, 1806
AcoI	YGGCCR	2 cut(s)	469, 1220
AcsI	RAATTY	5 cut(s)	376, 687, 698, 824, 958
AcuI	CTGAAG	4 cut(s)	690, 1113, 1224, 1878
AcyI	GRCGYC	1 cut(s)	95
AfaI	GTAC	3 cut(s)	146, 320, 1265
AflII	CTTAAG	1 cut(s)	989
AgsI	TTSAA	6 cut(s)	157, 280, 541, 889, 902, 1843
AjiI	CACGTC	1 cut(s)	1460
AjnI	CCWGG	8 cut(s)	1197, 1270, 1279, 1339, 1369, 1381, 1447, 1576
Alw21I	GWGCWC	2 cut(s)	999, 1111
Alw26I	GTCTC	3 cut(s)	1035, 1372, 1650
AlwI	GGATC	5 cut(s)	120, 320, 326, 1628, 1806
AlwNI	CAGNNNCTG	1 cut(s)	1469
Ama87I	CYCGRG	1 cut(s)	1823
AoxI	GGCC	6 cut(s)	75, 302, 469, 855, 1220, 1465
ApoI	RAATTY	5 cut(s)	376, 687, 698, 824, 958
AseI	ATTAAT	1 cut(s)	1499
AspLEI	GCGC	9 cut(s)	7, 38, 1168, 1391, 1446, 1474, 1552, 1554, 1556
AspS9I	GGNCC	8 cut(s)	75, 303, 578, 704, 856, 1277, 1466, 1568
AsuC2I	CCSGG	1 cut(s)	208
AsuHPI	GGTGA	3 cut(s)	317, 707, 1821
AvaI	CYCGRG	1 cut(s)	1823
AvaII	GGWCC	4 cut(s)	578, 704, 1277, 1568
BaeGI	GKGCMC	1 cut(s)	1681
BalI	TGGCCA	1 cut(s)	471
BanI	GGYRCC	1 cut(s)	1234
BanII	GRGCYC	2 cut(s)	999, 1111
BauI	CACGAG	1 cut(s)	1024
Bbv12I	GWGCWC	2 cut(s)	999, 1111
BccI	CCATC	3 cut(s)	734, 1559, 1789
BceAI	ACGGC	1 cut(s)	241
BciT130I	CCWGG	8 cut(s)	1199, 1272, 1281, 1341, 1371, 1383, 1449, 1578
BciVI	GTATCC	1 cut(s)	350
BclI	TGATCA	3 cut(s)	394, 723, 1915
BcnI	CCSGG	1 cut(s)	208
BcoDI	GTCTC	3 cut(s)	1035, 1372, 1650
BfaI	CTAG	5 cut(s)	261, 336, 714, 1674, 1922
BfoI	RGCGCY	2 cut(s)	1392, 1447
BfrI	CTTAAG	1 cut(s)	989
BfuAI	ACCTGC	1 cut(s)	1327
BfuI	GTATCC	1 cut(s)	350
BglI	GCCNNNNNGGC	1 cut(s)	1452
BlpI	GCTNAGC	1 cut(s)	1887
Bme1390I	CCNGG	9 cut(s)	208, 1199, 1272, 1281, 1341, 1371, 1383, 1449, 1578
Bme18I	GGWCC	4 cut(s)	578, 704, 1277, 1568
BmeT110I	CYCGRG	1 cut(s)	1823
BmgBI	CACGTC	1 cut(s)	1460
BmgT120I	GGNCC	8 cut(s)	75, 303, 578, 704, 856, 1277, 1466, 1568
BmiI	GGNNCC	6 cut(s)	76, 1066, 1196, 1236, 1570, 1755
BmrFI	CCNGG	9 cut(s)	208, 1199, 1272, 1281, 1341, 1371, 1383, 1449, 1578
BmsI	GCATC	4 cut(s)	244, 778, 1503, 1704
BplI	GAGNNNNNCTC	2 cut(s)	1179, 1211
BpmI	CTGGAG	1 cut(s)	1181
Bpu10I	CCTNAGC	1 cut(s)	12
Bpu1102I	GCTNAGC	1 cut(s)	1887
BpuEI	CTTGAG	1 cut(s)	1811
BpuMI	CCSGG	1 cut(s)	208
BsaHI	GRCGYC	1 cut(s)	95
BsaI	GGTCTC	2 cut(s)	1035, 1372
BsaJI	CCNNGG	1 cut(s)	1447
BsaWI	WCCGGW	2 cut(s)	1067, 1696
BsaXI	ACNNNNNCTCC	2 cut(s)	570, 600
Bse1I	ACTGG	6 cut(s)	82, 472, 1223, 1490, 1743, 1783
Bse3DI	GCAATG	2 cut(s)	1236, 1625
BseBI	CCWGG	8 cut(s)	1199, 1272, 1281, 1341, 1371, 1383, 1449, 1578
BseDI	CCNNGG	1 cut(s)	1447
BseGI	GGATG	3 cut(s)	259, 277, 435
BseMI	GCAATG	2 cut(s)	1236, 1625
BseMII	CTCAG	6 cut(s)	26, 1217, 1661, 1797, 1865, 1901
BseNI	ACTGG	6 cut(s)	82, 472, 1223, 1490, 1743, 1783
BsePI	GCGCGC	2 cut(s)	1550, 1552
BseRI	GAGGAG	2 cut(s)	454, 1239
BseSI	GKGCMC	1 cut(s)	1681
BseYI	CCCAGC	3 cut(s)	163, 1335, 1717
BsgI	GTGCAG	2 cut(s)	1482, 1929
Bsh1236I	CGCG	3 cut(s)	38, 1552, 1554
BshFI	GGCC	6 cut(s)	77, 304, 471, 857, 1222, 1467
BshNI	GGYRCC	1 cut(s)	1234
BsiHKAI	GWGCWC	2 cut(s)	999, 1111
BsiHKCI	CYCGRG	1 cut(s)	1823
BsiSI	CCGG	3 cut(s)	208, 1068, 1697
BslFI	GGGAC	3 cut(s)	209, 1554, 1678
BsmAI	GTCTC	3 cut(s)	1035, 1372, 1650
BsmFI	GGGAC	3 cut(s)	209, 1554, 1678
BsmI	GAATGC	2 cut(s)	34, 1079
BsnI	GGCC	6 cut(s)	77, 304, 471, 857, 1222, 1467
Bso31I	GGTCTC	2 cut(s)	1035, 1372
BsoBI	CYCGRG	1 cut(s)	1823
Bsp1286I	GDGCHC	3 cut(s)	999, 1111, 1681
Bsp143I	GATC	9 cut(s)	112, 312, 331, 394, 723, 733, 1633, 1798, 1915
Bsp1720I	GCTNAGC	1 cut(s)	1887
BspANI	GGCC	6 cut(s)	77, 304, 471, 857, 1222, 1467
BspCNI	CTCAG	6 cut(s)	25, 1216, 1660, 1798, 1866, 1900
BspFNI	CGCG	3 cut(s)	38, 1552, 1554
BspHI	TCATGA	1 cut(s)	726
BspLI	GGNNCC	6 cut(s)	76, 1066, 1196, 1236, 1570, 1755
BspMI	ACCTGC	1 cut(s)	1327
BspPI	GGATC	5 cut(s)	120, 320, 326, 1628, 1806
BspQI	GCTCTTC	2 cut(s)	1004, 1180
BspT107I	GGYRCC	1 cut(s)	1234
BspTI	CTTAAG	1 cut(s)	989
BspTNI	GGTCTC	2 cut(s)	1035, 1372
BsrDI	GCAATG	2 cut(s)	1236, 1625
BsrI	ACTGG	6 cut(s)	82, 472, 1223, 1490, 1743, 1783
BssECI	CCNNGG	1 cut(s)	1447
BssHII	GCGCGC	2 cut(s)	1550, 1552
BssMI	GATC	9 cut(s)	112, 312, 331, 394, 723, 733, 1633, 1798, 1915
BssNI	GRCGYC	1 cut(s)	95
BssSI	CACGAG	1 cut(s)	1024
Bst2BI	CACGAG	1 cut(s)	1024
Bst2UI	CCWGG	8 cut(s)	1199, 1272, 1281, 1341, 1371, 1383, 1449, 1578
Bst4CI	ACNGT	3 cut(s)	329, 1538, 1644
Bst6I	CTCTTC	3 cut(s)	1004, 1089, 1180
BstACI	GRCGYC	1 cut(s)	95
BstAFI	CTTAAG	1 cut(s)	989
BstAPI	GCANNNNNTGC	1 cut(s)	1469
BstC8I	GCNNGC	9 cut(s)	9, 34, 1465, 1552, 1554, 1622, 1784, 1899, 1903
BstDEI	CTNAG	6 cut(s)	12, 1203, 1647, 1806, 1874, 1887
BstF5I	GGATG	3 cut(s)	259, 277, 435
BstFNI	CGCG	3 cut(s)	38, 1552, 1554
BstH2I	RGCGCY	2 cut(s)	1392, 1447
BstHHI	GCGC	9 cut(s)	7, 38, 1168, 1391, 1446, 1474, 1552, 1554, 1556
BstKTI	GATC	9 cut(s)	115, 315, 334, 397, 726, 736, 1636, 1801, 1918
BstMAI	GTCTC	3 cut(s)	1035, 1372, 1650
BstMBI	GATC	9 cut(s)	112, 312, 331, 394, 723, 733, 1633, 1798, 1915
BstNI	CCWGG	8 cut(s)	1199, 1272, 1281, 1341, 1371, 1383, 1449, 1578
BstNSI	RCATGY	3 cut(s)	1594, 1624, 1786
BstSCI	CCNGG	9 cut(s)	206, 1197, 1270, 1279, 1339, 1369, 1381, 1447, 1576
BstSLI	GKGCMC	1 cut(s)	1681
BstUI	CGCG	3 cut(s)	38, 1552, 1554
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
BsuI	GTATCC	1 cut(s)	350
BsuRI	GGCC	6 cut(s)	77, 304, 471, 857, 1222, 1467
BtrI	CACGTC	1 cut(s)	1460
BtsCI	GGATG	3 cut(s)	259, 277, 435
BtsIMutI	CAGTG	2 cut(s)	1640, 1736
BveI	ACCTGC	1 cut(s)	1327
Cac8I	GCNNGC	9 cut(s)	9, 34, 1465, 1552, 1554, 1622, 1784, 1899, 1903
CaiI	CAGNNNCTG	1 cut(s)	1469
CciI	TCATGA	1 cut(s)	726
CfoI	GCGC	9 cut(s)	7, 38, 1168, 1391, 1446, 1474, 1552, 1554, 1556
Cfr13I	GGNCC	8 cut(s)	75, 303, 578, 704, 856, 1277, 1466, 1568
Csp6I	GTAC	3 cut(s)	145, 319, 1264
CviQI	GTAC	3 cut(s)	145, 319, 1264
DdeI	CTNAG	6 cut(s)	12, 1203, 1647, 1806, 1874, 1887
DpnI	GATC	9 cut(s)	114, 314, 333, 396, 725, 735, 1635, 1800, 1917
DpnII	GATC	9 cut(s)	112, 312, 331, 394, 723, 733, 1633, 1798, 1915
EaeI	YGGCCR	2 cut(s)	469, 1220
Eam1104I	CTCTTC	3 cut(s)	1004, 1089, 1180
EarI	CTCTTC	3 cut(s)	1004, 1089, 1180
EciI	GGCGGA	1 cut(s)	1130
Ecl136II	GAGCTC	2 cut(s)	997, 1109
Eco24I	GRGCYC	2 cut(s)	999, 1111
Eco31I	GGTCTC	2 cut(s)	1035, 1372
Eco32I	GATATC	1 cut(s)	1352
Eco47I	GGWCC	4 cut(s)	578, 704, 1277, 1568
Eco53kI	GAGCTC	2 cut(s)	997, 1109
Eco57I	CTGAAG	4 cut(s)	690, 1113, 1224, 1878
Eco88I	CYCGRG	1 cut(s)	1823
EcoICRI	GAGCTC	2 cut(s)	997, 1109
EcoO109I	RGGNCCY	1 cut(s)	1466
EcoRII	CCWGG	8 cut(s)	1197, 1270, 1279, 1339, 1369, 1381, 1447, 1576
EcoRV	GATATC	1 cut(s)	1352
EcoT38I	GRGCYC	2 cut(s)	999, 1111
FalI	AAGNNNNNCTT	2 cut(s)	983, 1015
FaqI	GGGAC	3 cut(s)	209, 1554, 1678
FauI	CCCGC	1 cut(s)	255
FauNDI	CATATG	1 cut(s)	1606
FbaI	TGATCA	3 cut(s)	394, 723, 1915
FblI	GTMKAC	1 cut(s)	1533
FokI	GGATG	3 cut(s)	266, 284, 422
FriOI	GRGCYC	2 cut(s)	999, 1111
FspBI	CTAG	5 cut(s)	261, 336, 714, 1674, 1922
FspI	TGCGCA	2 cut(s)	1167, 1473
GlaI	GCGC	9 cut(s)	6, 37, 1167, 1390, 1445, 1473, 1551, 1553, 1555
GsaI	CCCAGC	3 cut(s)	167, 1339, 1721
GsuI	CTGGAG	1 cut(s)	1181
HaeII	RGCGCY	2 cut(s)	1392, 1447
HaeIII	GGCC	6 cut(s)	77, 304, 471, 857, 1222, 1467
HapII	CCGG	3 cut(s)	208, 1068, 1697
HhaI	GCGC	9 cut(s)	7, 38, 1168, 1391, 1446, 1474, 1552, 1554, 1556
Hin1I	GRCGYC	1 cut(s)	95
Hin6I	GCGC	9 cut(s)	5, 36, 1166, 1389, 1444, 1472, 1550, 1552, 1554
HinP1I	GCGC	9 cut(s)	5, 36, 1166, 1389, 1444, 1472, 1550, 1552, 1554
HincII	GTYRAC	1 cut(s)	769
HindII	GTYRAC	1 cut(s)	769
HindIII	AAGCTT	1 cut(s)	1836
HinfI	GANTC	6 cut(s)	134, 461, 649, 659, 1726, 1826
HpaII	CCGG	3 cut(s)	208, 1068, 1697
HphI	GGTGA	3 cut(s)	317, 707, 1821
Hpy166II	GTNNAC	3 cut(s)	204, 769, 1534
Hpy188I	TCNGA	5 cut(s)	27, 658, 813, 871, 1875
Hpy8I	GTNNAC	3 cut(s)	204, 769, 1534
Hpy99I	CGWCG	2 cut(s)	97, 100
HpyAV	CCTTC	4 cut(s)	294, 847, 1248, 1765
HpyCH4III	ACNGT	3 cut(s)	329, 1538, 1644
HpyCH4IV	ACGT	3 cut(s)	95, 105, 1459
HpyF3I	CTNAG	6 cut(s)	12, 1203, 1647, 1806, 1874, 1887
HpySE526I	ACGT	3 cut(s)	95, 105, 1459
Hsp92I	GRCGYC	1 cut(s)	95
HspAI	GCGC	9 cut(s)	5, 36, 1166, 1389, 1444, 1472, 1550, 1552, 1554
Ksp22I	TGATCA	3 cut(s)	394, 723, 1915
Kzo9I	GATC	9 cut(s)	112, 312, 331, 394, 723, 733, 1633, 1798, 1915
LguI	GCTCTTC	2 cut(s)	1004, 1180
LmnI	GCTCC	6 cut(s)	938, 994, 1200, 1252, 1396, 1699
LweI	GCATC	4 cut(s)	244, 778, 1503, 1704
MaeI	CTAG	5 cut(s)	261, 336, 714, 1674, 1922
MaeII	ACGT	3 cut(s)	95, 105, 1459
MaeIII	GTNAC	5 cut(s)	88, 221, 1538, 1774, 1827
MalI	GATC	9 cut(s)	114, 314, 333, 396, 725, 735, 1635, 1800, 1917
MboI	GATC	9 cut(s)	112, 312, 331, 394, 723, 733, 1633, 1798, 1915
MboII	GAAGA	9 cut(s)	414, 521, 658, 683, 874, 991, 1106, 1190, 1197
MfeI	CAATTG	1 cut(s)	1659
MflI	RGATCY	1 cut(s)	112
MhlI	GDGCHC	3 cut(s)	999, 1111, 1681
MlsI	TGGCCA	1 cut(s)	471
MluNI	TGGCCA	1 cut(s)	471
MlyI	GAGTC	2 cut(s)	455, 1835
MmeI	TCCRAC	1 cut(s)	1564
Mox20I	TGGCCA	1 cut(s)	471
MscI	TGGCCA	1 cut(s)	471
MseI	TTAA	4 cut(s)	372, 954, 990, 1499
Msp20I	TGGCCA	1 cut(s)	471
MspA1I	CMGCKG	4 cut(s)	142, 163, 1750, 1913
MspCI	CTTAAG	1 cut(s)	989
MspI	CCGG	3 cut(s)	208, 1068, 1697
MspR9I	CCNGG	9 cut(s)	208, 1199, 1272, 1281, 1341, 1371, 1383, 1449, 1578
MunI	CAATTG	1 cut(s)	1659
Mva1269I	GAATGC	2 cut(s)	34, 1079
MvaI	CCWGG	8 cut(s)	1199, 1272, 1281, 1341, 1371, 1383, 1449, 1578
MvnI	CGCG	3 cut(s)	38, 1552, 1554
NciI	CCSGG	1 cut(s)	208
NdeI	CATATG	1 cut(s)	1606
NdeII	GATC	9 cut(s)	112, 312, 331, 394, 723, 733, 1633, 1798, 1915
NlaIV	GGNNCC	6 cut(s)	76, 1066, 1196, 1236, 1570, 1755
NmuCI	GTSAC	2 cut(s)	88, 1827
NsbI	TGCGCA	2 cut(s)	1167, 1473
NspI	RCATGY	3 cut(s)	1594, 1624, 1786
PaeI	GCATGC	2 cut(s)	1624, 1786
PaeR7I	CTCGAG	1 cut(s)	1823
PagI	TCATGA	1 cut(s)	726
PaqCI	CACCTGC	1 cut(s)	1327
PauI	GCGCGC	2 cut(s)	1550, 1552
PciSI	GCTCTTC	2 cut(s)	1004, 1180
PcsI	WCGNNNNNNNCGW	1 cut(s)	1830
PctI	GAATGC	2 cut(s)	34, 1079
PfeI	GAWTC	4 cut(s)	134, 649, 659, 1726
PflFI	GACNNNGTC	1 cut(s)	94
PflMI	CCANNNNNTGG	1 cut(s)	1286
PleI	GAGTC	2 cut(s)	455, 1834
PpsI	GAGTC	2 cut(s)	455, 1834
PshBI	ATTAAT	1 cut(s)	1499
PsiI	TTATAA	1 cut(s)	554
Psp124BI	GAGCTC	2 cut(s)	999, 1111
Psp6I	CCWGG	8 cut(s)	1197, 1270, 1279, 1339, 1369, 1381, 1447, 1576
PspFI	CCCAGC	3 cut(s)	163, 1335, 1717
PspGI	CCWGG	8 cut(s)	1197, 1270, 1279, 1339, 1369, 1381, 1447, 1576
PspN4I	GGNNCC	6 cut(s)	76, 1066, 1196, 1236, 1570, 1755
PspPI	GGNCC	8 cut(s)	75, 303, 578, 704, 856, 1277, 1466, 1568
PspXI	VCTCGAGB	1 cut(s)	1823
PsrI	GAACNNNNNNTAC	2 cut(s)	137, 169
PstNI	CAGNNNCTG	1 cut(s)	1469
PsuI	RGATCY	1 cut(s)	112
PsyI	GACNNNGTC	1 cut(s)	94
PteI	GCGCGC	2 cut(s)	1550, 1552
PvuII	CAGCTG	4 cut(s)	142, 163, 1750, 1913
RsaI	GTAC	3 cut(s)	146, 320, 1265
RsaNI	GTAC	3 cut(s)	145, 319, 1264
SacI	GAGCTC	2 cut(s)	999, 1111
SapI	GCTCTTC	2 cut(s)	1004, 1180
SaqAI	TTAA	4 cut(s)	372, 954, 990, 1499
Sau3AI	GATC	9 cut(s)	112, 312, 331, 394, 723, 733, 1633, 1798, 1915
Sau96I	GGNCC	8 cut(s)	75, 303, 578, 704, 856, 1277, 1466, 1568
SchI	GAGTC	2 cut(s)	455, 1835
ScrFI	CCNGG	9 cut(s)	208, 1199, 1272, 1281, 1341, 1371, 1383, 1449, 1578
SduI	GDGCHC	3 cut(s)	999, 1111, 1681
SfaNI	GCATC	4 cut(s)	244, 778, 1503, 1704
Sfr274I	CTCGAG	1 cut(s)	1823
SinI	GGWCC	4 cut(s)	578, 704, 1277, 1568
SlaI	CTCGAG	1 cut(s)	1823
SmlI	CTYRAG	3 cut(s)	989, 1790, 1823
SmoI	CTYRAG	3 cut(s)	989, 1790, 1823
SphI	GCATGC	2 cut(s)	1624, 1786
SspI	AATATT	1 cut(s)	1299
SspMI	CTAG	5 cut(s)	261, 336, 714, 1674, 1922
SstI	GAGCTC	2 cut(s)	999, 1111
StyD4I	CCNGG	9 cut(s)	206, 1197, 1270, 1279, 1339, 1369, 1381, 1447, 1576
TaaI	ACNGT	3 cut(s)	329, 1538, 1644
TaiI	ACGT	3 cut(s)	98, 108, 1462
TaqI	TCGA	4 cut(s)	117, 662, 895, 1824
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	9 cut(s)	41, 44, 50, 53, 56, 59, 62, 1222, 1389
TfiI	GAWTC	4 cut(s)	134, 649, 659, 1726
Tru1I	TTAA	4 cut(s)	372, 954, 990, 1499
Tru9I	TTAA	4 cut(s)	372, 954, 990, 1499
TscAI	CASTG	2 cut(s)	1647, 1743
TseFI	GTSAC	2 cut(s)	88, 1827
Tsp45I	GTSAC	2 cut(s)	88, 1827
TspDTI	ATGAA	5 cut(s)	414, 522, 897, 926, 1136
TspGWI	ACGGA	3 cut(s)	146, 332, 1065
TspRI	CASTG	2 cut(s)	1647, 1743
Tth111I	GACNNNGTC	1 cut(s)	94
Van91I	CCANNNNNTGG	1 cut(s)	1286
Vha464I	CTTAAG	1 cut(s)	989
VpaK11BI	GGWCC	4 cut(s)	578, 704, 1277, 1568
VspI	ATTAAT	1 cut(s)	1499
XapI	RAATTY	5 cut(s)	376, 687, 698, 824, 958
XceI	RCATGY	3 cut(s)	1594, 1624, 1786
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1343
XhoI	CTCGAG	1 cut(s)	1823
XmiI	GTMKAC	1 cut(s)	1533
XspI	CTAG	5 cut(s)	261, 336, 714, 1674, 1922
ZraI	GACGTC	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.