Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002657

Physical Location & Seq

Genomic Coordinates Forward (+)

11828970 .. 11834121

Gene Structure 5152 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23019

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1965 bp

ATGGCGCAAGCTCAGGTTCAGGGTCAGAATGCGAACGCGGCGGCGGCGGCGGCTGCTGCTGCGGCGGCTAATGGTGGTGGGGCCAACCAGTTCGTGACGACGTCGCTTTACGTTGGGGATCTCGACCAGAACATTACGGATTCGCAGCTGTACGACCTGTTCAACCAGCTGGGTCAGGTCGTGTCTGTTAGGGTTTGCAGGGACTTGTCCACCCGGAGGTCGCTTGGTTACGGCTATGTCAATTATAGCAACCCGCAGGATGCTGCTAGGGCATTGGATGTGTTGAACTTCACTCCTGTAAATGGGAGGCCCATTAGGATCATGTACTCTCACCGTGATCCTAGTATTCGTAAAAGTGGGTCTGGAAATATATTTATTAAGAATTTGGACAAAGCTCTTGATCACAAAGCCTTGCATGATACATTTTCTTCATTCGGAAACATCCTTTCTTGCAAGGTGGCAACAGACTCCTCTGGCCAGTCAAAGGGCTATGGCTTTGTGCAATTTGATAATGAAGAAGCTGCCCAAAAAGCTATTGCGAAGTTGAATGGTATGCTTATAAATGATAAGCAAGTTTTTGTAGGACCATTCCTCCGCAAACAGGAAAGGGAGGGTGTTGCTGACAAGTCAAAGTTCCAGAATGTTTATGTGAAGAATCTATCAGAATCGACTACTGAAGATGATTTTACCAAAATTTTTGGTGAATTTGGTCCAATCACTAGCGTAGTGATCATGAGAGATCAAGATGGAAAATCAAAGTGCTTTGGATTTGTCAACTTTGATAATCCAGATGATGCTGCCAGAGCTGTTGAGGCTCTGAATGGAAAGAAATTTGATGATAAGGAGTGGTATGTTGGGAAGGCCCAGAAGAAATCTGAAAGGGAAAATGAATTGAAACTTCGATTTGAACAGAGCATGAAAGAGGCAGCAGACAAATATCAAGGAGCAAACTTGTATGTTAAAAATTTAGATGATAGCATAGTTGATGATAAACTTAAGGAGCTCTTCACTCCATTTGGCACAATTACCTCGTGTAAGGTCATGCGAGACCCCAACGGAGTAAGTAGGGGTTCCGGTTTTGTTGCATTCTCAACTCCTGAAGAGGCAAATAGAGCTCTGGCAGAGATGAATGGAAAAATGATTGTAAGCAAACCTCTCTATGTTGCACTTGCGCAACGAAAAGAAGATAGAAGAGCGAGGCTCCAGGCTCAGTTTTCTCAAATGCGGCCAGTTGCAATGGCACCTTCAGTTGCTCCTCGTATGCCAATGTACCCTCCTGGTGGTCCAGGTATTGGACAGCAAATATTCTATGGTCAAGCCCCACCTGCTATCATTCCCTCCCAGCCTGGATTTGGATATCAGCAGCAGCTTGTTCCTGGTATGAGACCTGGCGGCGCTCCCATGCCAAACTTCTTTGTGCCAATGGTTCAGCAGGGGCAGCAAGGGCAGCGCCCTGGTGGCAGACGTGCAGGCCCTGCGCAGCAAAACCAGCAACCAGTTCCATTAATGCAACAGCAGATGCTTCCAAGAGGGCGTGTCTACCGTTACCCGTCTGGGCGCGCTCTGCCTGATGGTCCCATGCCTGGTGTTGGAGGCATGTTTTCTGTTCCATATGACTTGTCTGGCATGCCATTGCGTGATCCAGCACTGTCTCAGCCTGTTCCAATTGGGACTTTGGCTAGTGCCCTTGCAAATGCTACACCGGAGCAGCAAAGGACGATGCTGGGGGAGAATCTTTACCCACTGGTGGAACAGCTGGAACCTGACAATGCAGCGAAGGTTACTGGCATGCTTCTTGAGATGGATCAAACTGAGGTTCTGCATTTGCTCGAGTCACCTGAAGCTTTGAAAGCAAAGGTGGCTGAAGCTATGGAGGTTCTGAGGAATGTTGCTCAGCAGCAGCAAGCTGGCGGTGCAGCTGATCAACTAGCCTCATTGTCGCTCAATGATAATCTTGTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006412 GO:0006413 GO:0006417 GO:0006446 GO:0006518 GO:0006807 GO:0006950 GO:0006970 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009628 GO:0009651 GO:0009889 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031329 GO:0032268 GO:0034248 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0060211 GO:0060255 GO:0061013 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:1900151 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1903311 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

PABP RRM_1

Protein Analysis

654

Amino Acids

71.22

Weight (kDa)

8.38

Isoelectric Point (pI)

39.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	36 - 106	1.3e-19	RNA recognition motif
RRM_1	PF00076	124 - 191	3.3e-21	RNA recognition motif
RRM_1	PF00076	215 - 283	1.4e-24	RNA recognition motif
RRM_1	PF00076	318 - 386	1.9e-19	RNA recognition motif
MLLE	PF00658	562 - 627	4.3e-30	MLLE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49760 AT1G49760 AT4G34110
fragaria_vesca	FvH4_2g05720 FvH4_2g05720 FvH4_2g05720 FvH4_2g05720 FvH4_2g34040 FvH4_2g34040 FvH4_2g34040 FvH4_6g37220
malus_domestica	MD00G1138300.v1.1 MD05G1085100.v1.1 MD08G1096400.v1.1 MD15G1079100.v1.1
prunus_persica	Prupe.1G432200_v2.0.a1 Prupe.1G432200_v2.0.a1 Prupe.8G129400_v2.0.a1 Prupe.8G129400_v2.0.a1
pyrus_communis	pycom05g08430 pycom08g07840 pycom10g07970 pycom15g07370
rosa_chinensis	RchiOBHm_Chr6g0256591 RchiOBHm_Chr6g0308331
rosa_laevigata	RLG00000010649 RLG00000014752
rosa_multiflora	Rmu_sc0003012.1_g000007
rosa_roxburghii	Rroxscaffold_7G00160250 Rroxscaffold_7G00209190
rosa_rugosa	Rorug05G0564800 Rorug06G0366200 Rorug06G0366200
rosa_samantha	Rh6AG082800 Rh6AG475400 Rh6BG077400 Rh6CG072000 Rh6DG477300
rosa_wichuraiana	Rw6G007450 Rw6G041440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	560
AarI	CACCTGC	1 cut(s)	1333
AatII	GACGTC	1 cut(s)	104
Acc16I	TGCGCA	2 cut(s)	1173, 1479
Acc36I	ACCTGC	1 cut(s)	1333
AccB1I	GGYRCC	1 cut(s)	1240
AccB7I	CCANNNNNTGG	1 cut(s)	1292
AccI	GTMKAC	1 cut(s)	1539
AccII	CGCG	2 cut(s)	38, 1560
AclWI	GGATC	5 cut(s)	126, 326, 332, 1634, 1812
AcoI	YGGCCR	2 cut(s)	475, 1226
AcsI	RAATTY	5 cut(s)	382, 693, 704, 830, 964
AcuI	CTGAAG	5 cut(s)	696, 1119, 1230, 1860, 1884
AcyI	GRCGYC	1 cut(s)	101
AfaI	GTAC	3 cut(s)	152, 326, 1271
AflII	CTTAAG	1 cut(s)	995
AgsI	TTSAA	6 cut(s)	163, 286, 547, 895, 908, 1849
AjiI	CACGTC	1 cut(s)	1466
AjnI	CCWGG	8 cut(s)	1203, 1276, 1285, 1345, 1375, 1387, 1453, 1582
Alw21I	GWGCWC	2 cut(s)	1005, 1117
Alw26I	GTCTC	3 cut(s)	1041, 1378, 1656
AlwI	GGATC	5 cut(s)	126, 326, 332, 1634, 1812
AlwNI	CAGNNNCTG	1 cut(s)	1475
Ama87I	CYCGRG	1 cut(s)	1829
AoxI	GGCC	6 cut(s)	81, 308, 475, 861, 1226, 1471
ApoI	RAATTY	5 cut(s)	382, 693, 704, 830, 964
AseI	ATTAAT	1 cut(s)	1505
AspLEI	GCGC	7 cut(s)	7, 1174, 1397, 1452, 1480, 1560, 1562
AspS9I	GGNCC	8 cut(s)	81, 309, 584, 710, 862, 1283, 1472, 1574
AsuC2I	CCSGG	1 cut(s)	214
AsuHPI	GGTGA	3 cut(s)	323, 713, 1827
AvaI	CYCGRG	1 cut(s)	1829
AvaII	GGWCC	4 cut(s)	584, 710, 1283, 1574
BaeGI	GKGCMC	1 cut(s)	1687
BalI	TGGCCA	1 cut(s)	477
BanI	GGYRCC	1 cut(s)	1240
BanII	GRGCYC	2 cut(s)	1005, 1117
BauI	CACGAG	1 cut(s)	1030
Bbv12I	GWGCWC	2 cut(s)	1005, 1117
BccI	CCATC	3 cut(s)	740, 1565, 1795
BceAI	ACGGC	1 cut(s)	247
BciT130I	CCWGG	8 cut(s)	1205, 1278, 1287, 1347, 1377, 1389, 1455, 1584
BclI	TGATCA	3 cut(s)	400, 729, 1921
BcnI	CCSGG	1 cut(s)	214
BcoDI	GTCTC	3 cut(s)	1041, 1378, 1656
BfaI	CTAG	5 cut(s)	267, 342, 720, 1680, 1928
BfoI	RGCGCY	2 cut(s)	1398, 1453
BfrI	CTTAAG	1 cut(s)	995
BfuAI	ACCTGC	1 cut(s)	1333
BglI	GCCNNNNNGGC	1 cut(s)	1458
BlpI	GCTNAGC	1 cut(s)	1893
Bme1390I	CCNGG	9 cut(s)	214, 1205, 1278, 1287, 1347, 1377, 1389, 1455, 1584
Bme18I	GGWCC	4 cut(s)	584, 710, 1283, 1574
BmeT110I	CYCGRG	1 cut(s)	1829
BmgBI	CACGTC	1 cut(s)	1466
BmgT120I	GGNCC	8 cut(s)	81, 309, 584, 710, 862, 1283, 1472, 1574
BmiI	GGNNCC	6 cut(s)	82, 1072, 1202, 1242, 1576, 1761
BmrFI	CCNGG	9 cut(s)	214, 1205, 1278, 1287, 1347, 1377, 1389, 1455, 1584
BmsI	GCATC	4 cut(s)	250, 784, 1509, 1710
BplI	GAGNNNNNCTC	2 cut(s)	1185, 1217
BpmI	CTGGAG	1 cut(s)	1187
Bpu10I	CCTNAGC	1 cut(s)	12
Bpu1102I	GCTNAGC	1 cut(s)	1893
BpuEI	CTTGAG	1 cut(s)	1817
BpuMI	CCSGG	1 cut(s)	214
BsaHI	GRCGYC	1 cut(s)	101
BsaI	GGTCTC	2 cut(s)	1041, 1378
BsaJI	CCNNGG	1 cut(s)	1453
BsaWI	WCCGGW	2 cut(s)	1073, 1702
BsaXI	ACNNNNNCTCC	2 cut(s)	576, 606
Bse1I	ACTGG	6 cut(s)	88, 478, 1229, 1496, 1749, 1789
Bse3DI	GCAATG	2 cut(s)	1242, 1631
BseBI	CCWGG	8 cut(s)	1205, 1278, 1287, 1347, 1377, 1389, 1455, 1584
BseDI	CCNNGG	1 cut(s)	1453
BseGI	GGATG	3 cut(s)	265, 283, 441
BseMI	GCAATG	2 cut(s)	1242, 1631
BseMII	CTCAG	6 cut(s)	26, 1223, 1667, 1803, 1871, 1907
BseNI	ACTGG	6 cut(s)	88, 478, 1229, 1496, 1749, 1789
BsePI	GCGCGC	1 cut(s)	1558
BseRI	GAGGAG	2 cut(s)	460, 1245
BseSI	GKGCMC	1 cut(s)	1687
BseYI	CCCAGC	3 cut(s)	169, 1341, 1723
BsgI	GTGCAG	2 cut(s)	1488, 1935
Bsh1236I	CGCG	2 cut(s)	38, 1560
BshFI	GGCC	6 cut(s)	83, 310, 477, 863, 1228, 1473
BshNI	GGYRCC	1 cut(s)	1240
BsiHKAI	GWGCWC	2 cut(s)	1005, 1117
BsiHKCI	CYCGRG	1 cut(s)	1829
BsiSI	CCGG	3 cut(s)	214, 1074, 1703
BslFI	GGGAC	3 cut(s)	215, 1560, 1684
BsmAI	GTCTC	3 cut(s)	1041, 1378, 1656
BsmFI	GGGAC	3 cut(s)	215, 1560, 1684
BsmI	GAATGC	2 cut(s)	34, 1085
BsnI	GGCC	6 cut(s)	83, 310, 477, 863, 1228, 1473
Bso31I	GGTCTC	2 cut(s)	1041, 1378
BsoBI	CYCGRG	1 cut(s)	1829
Bsp1286I	GDGCHC	3 cut(s)	1005, 1117, 1687
Bsp143I	GATC	9 cut(s)	118, 318, 337, 400, 729, 739, 1639, 1804, 1921
Bsp1720I	GCTNAGC	1 cut(s)	1893
BspANI	GGCC	6 cut(s)	83, 310, 477, 863, 1228, 1473
BspCNI	CTCAG	6 cut(s)	25, 1222, 1666, 1804, 1872, 1906
BspFNI	CGCG	2 cut(s)	38, 1560
BspHI	TCATGA	1 cut(s)	732
BspLI	GGNNCC	6 cut(s)	82, 1072, 1202, 1242, 1576, 1761
BspMI	ACCTGC	1 cut(s)	1333
BspPI	GGATC	5 cut(s)	126, 326, 332, 1634, 1812
BspQI	GCTCTTC	2 cut(s)	1010, 1186
BspT107I	GGYRCC	1 cut(s)	1240
BspTI	CTTAAG	1 cut(s)	995
BspTNI	GGTCTC	2 cut(s)	1041, 1378
BsrDI	GCAATG	2 cut(s)	1242, 1631
BsrI	ACTGG	6 cut(s)	88, 478, 1229, 1496, 1749, 1789
BssECI	CCNNGG	1 cut(s)	1453
BssHII	GCGCGC	1 cut(s)	1558
BssMI	GATC	9 cut(s)	118, 318, 337, 400, 729, 739, 1639, 1804, 1921
BssNI	GRCGYC	1 cut(s)	101
BssSI	CACGAG	1 cut(s)	1030
Bst2BI	CACGAG	1 cut(s)	1030
Bst2UI	CCWGG	8 cut(s)	1205, 1278, 1287, 1347, 1377, 1389, 1455, 1584
Bst4CI	ACNGT	3 cut(s)	335, 1544, 1650
Bst6I	CTCTTC	3 cut(s)	1010, 1095, 1186
BstACI	GRCGYC	1 cut(s)	101
BstAFI	CTTAAG	1 cut(s)	995
BstAPI	GCANNNNNTGC	1 cut(s)	1475
BstC8I	GCNNGC	7 cut(s)	9, 1471, 1560, 1628, 1790, 1905, 1909
BstDEI	CTNAG	6 cut(s)	12, 1209, 1653, 1812, 1880, 1893
BstF5I	GGATG	3 cut(s)	265, 283, 441
BstFNI	CGCG	2 cut(s)	38, 1560
BstH2I	RGCGCY	2 cut(s)	1398, 1453
BstHHI	GCGC	7 cut(s)	7, 1174, 1397, 1452, 1480, 1560, 1562
BstKTI	GATC	9 cut(s)	121, 321, 340, 403, 732, 742, 1642, 1807, 1924
BstMAI	GTCTC	3 cut(s)	1041, 1378, 1656
BstMBI	GATC	9 cut(s)	118, 318, 337, 400, 729, 739, 1639, 1804, 1921
BstNI	CCWGG	8 cut(s)	1205, 1278, 1287, 1347, 1377, 1389, 1455, 1584
BstNSI	RCATGY	3 cut(s)	1600, 1630, 1792
BstSCI	CCNGG	9 cut(s)	212, 1203, 1276, 1285, 1345, 1375, 1387, 1453, 1582
BstSLI	GKGCMC	1 cut(s)	1687
BstUI	CGCG	2 cut(s)	38, 1560
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
BsuRI	GGCC	6 cut(s)	83, 310, 477, 863, 1228, 1473
BtrI	CACGTC	1 cut(s)	1466
BtsCI	GGATG	3 cut(s)	265, 283, 441
BtsIMutI	CAGTG	2 cut(s)	1646, 1742
BveI	ACCTGC	1 cut(s)	1333
Cac8I	GCNNGC	7 cut(s)	9, 1471, 1560, 1628, 1790, 1905, 1909
CaiI	CAGNNNCTG	1 cut(s)	1475
CciI	TCATGA	1 cut(s)	732
CfoI	GCGC	7 cut(s)	7, 1174, 1397, 1452, 1480, 1560, 1562
Cfr13I	GGNCC	8 cut(s)	81, 309, 584, 710, 862, 1283, 1472, 1574
Csp6I	GTAC	3 cut(s)	151, 325, 1270
CviQI	GTAC	3 cut(s)	151, 325, 1270
DdeI	CTNAG	6 cut(s)	12, 1209, 1653, 1812, 1880, 1893
DpnI	GATC	9 cut(s)	120, 320, 339, 402, 731, 741, 1641, 1806, 1923
DpnII	GATC	9 cut(s)	118, 318, 337, 400, 729, 739, 1639, 1804, 1921
EaeI	YGGCCR	2 cut(s)	475, 1226
Eam1104I	CTCTTC	3 cut(s)	1010, 1095, 1186
EarI	CTCTTC	3 cut(s)	1010, 1095, 1186
Ecl136II	GAGCTC	2 cut(s)	1003, 1115
Eco24I	GRGCYC	2 cut(s)	1005, 1117
Eco31I	GGTCTC	2 cut(s)	1041, 1378
Eco32I	GATATC	1 cut(s)	1358
Eco47I	GGWCC	4 cut(s)	584, 710, 1283, 1574
Eco53kI	GAGCTC	2 cut(s)	1003, 1115
Eco57I	CTGAAG	5 cut(s)	696, 1119, 1230, 1860, 1884
Eco88I	CYCGRG	1 cut(s)	1829
EcoICRI	GAGCTC	2 cut(s)	1003, 1115
EcoO109I	RGGNCCY	1 cut(s)	1472
EcoRII	CCWGG	8 cut(s)	1203, 1276, 1285, 1345, 1375, 1387, 1453, 1582
EcoRV	GATATC	1 cut(s)	1358
EcoT38I	GRGCYC	2 cut(s)	1005, 1117
FalI	AAGNNNNNCTT	2 cut(s)	989, 1021
FaqI	GGGAC	3 cut(s)	215, 1560, 1684
FauI	CCCGC	1 cut(s)	261
FauNDI	CATATG	1 cut(s)	1612
FbaI	TGATCA	3 cut(s)	400, 729, 1921
FblI	GTMKAC	1 cut(s)	1539
FokI	GGATG	3 cut(s)	272, 290, 428
FriOI	GRGCYC	2 cut(s)	1005, 1117
FspBI	CTAG	5 cut(s)	267, 342, 720, 1680, 1928
FspI	TGCGCA	2 cut(s)	1173, 1479
GlaI	GCGC	7 cut(s)	6, 1173, 1396, 1451, 1479, 1559, 1561
GsaI	CCCAGC	3 cut(s)	173, 1345, 1727
GsuI	CTGGAG	1 cut(s)	1187
HaeII	RGCGCY	2 cut(s)	1398, 1453
HaeIII	GGCC	6 cut(s)	83, 310, 477, 863, 1228, 1473
HapII	CCGG	3 cut(s)	214, 1074, 1703
HhaI	GCGC	7 cut(s)	7, 1174, 1397, 1452, 1480, 1560, 1562
Hin1I	GRCGYC	1 cut(s)	101
Hin6I	GCGC	7 cut(s)	5, 1172, 1395, 1450, 1478, 1558, 1560
HinP1I	GCGC	7 cut(s)	5, 1172, 1395, 1450, 1478, 1558, 1560
HincII	GTYRAC	1 cut(s)	775
HindII	GTYRAC	1 cut(s)	775
HindIII	AAGCTT	1 cut(s)	1842
HinfI	GANTC	6 cut(s)	140, 467, 655, 665, 1732, 1832
HpaII	CCGG	3 cut(s)	214, 1074, 1703
HphI	GGTGA	3 cut(s)	323, 713, 1827
Hpy166II	GTNNAC	3 cut(s)	210, 775, 1540
Hpy188I	TCNGA	6 cut(s)	27, 437, 664, 819, 877, 1881
Hpy8I	GTNNAC	3 cut(s)	210, 775, 1540
Hpy99I	CGWCG	2 cut(s)	103, 106
HpyAV	CCTTC	3 cut(s)	853, 1254, 1771
HpyCH4III	ACNGT	3 cut(s)	335, 1544, 1650
HpyCH4IV	ACGT	3 cut(s)	101, 111, 1465
HpyF3I	CTNAG	6 cut(s)	12, 1209, 1653, 1812, 1880, 1893
HpySE526I	ACGT	3 cut(s)	101, 111, 1465
Hsp92I	GRCGYC	1 cut(s)	101
HspAI	GCGC	7 cut(s)	5, 1172, 1395, 1450, 1478, 1558, 1560
Ksp22I	TGATCA	3 cut(s)	400, 729, 1921
Kzo9I	GATC	9 cut(s)	118, 318, 337, 400, 729, 739, 1639, 1804, 1921
LguI	GCTCTTC	2 cut(s)	1010, 1186
LmnI	GCTCC	6 cut(s)	944, 1000, 1206, 1258, 1402, 1705
LweI	GCATC	4 cut(s)	250, 784, 1509, 1710
MaeI	CTAG	5 cut(s)	267, 342, 720, 1680, 1928
MaeII	ACGT	3 cut(s)	101, 111, 1465
MaeIII	GTNAC	5 cut(s)	94, 227, 1544, 1780, 1833
MalI	GATC	9 cut(s)	120, 320, 339, 402, 731, 741, 1641, 1806, 1923
MboI	GATC	9 cut(s)	118, 318, 337, 400, 729, 739, 1639, 1804, 1921
MboII	GAAGA	9 cut(s)	420, 527, 664, 689, 880, 997, 1112, 1196, 1203
MfeI	CAATTG	1 cut(s)	1665
MflI	RGATCY	1 cut(s)	118
MhlI	GDGCHC	3 cut(s)	1005, 1117, 1687
MlsI	TGGCCA	1 cut(s)	477
MluNI	TGGCCA	1 cut(s)	477
MlyI	GAGTC	2 cut(s)	461, 1841
MmeI	TCCRAC	1 cut(s)	1570
Mox20I	TGGCCA	1 cut(s)	477
MscI	TGGCCA	1 cut(s)	477
MseI	TTAA	4 cut(s)	378, 960, 996, 1505
Msp20I	TGGCCA	1 cut(s)	477
MspA1I	CMGCKG	4 cut(s)	148, 169, 1756, 1919
MspCI	CTTAAG	1 cut(s)	995
MspI	CCGG	3 cut(s)	214, 1074, 1703
MspR9I	CCNGG	9 cut(s)	214, 1205, 1278, 1287, 1347, 1377, 1389, 1455, 1584
MunI	CAATTG	1 cut(s)	1665
Mva1269I	GAATGC	2 cut(s)	34, 1085
MvaI	CCWGG	8 cut(s)	1205, 1278, 1287, 1347, 1377, 1389, 1455, 1584
MvnI	CGCG	2 cut(s)	38, 1560
NciI	CCSGG	1 cut(s)	214
NdeI	CATATG	1 cut(s)	1612
NdeII	GATC	9 cut(s)	118, 318, 337, 400, 729, 739, 1639, 1804, 1921
NlaIV	GGNNCC	6 cut(s)	82, 1072, 1202, 1242, 1576, 1761
NmuCI	GTSAC	2 cut(s)	94, 1833
NsbI	TGCGCA	2 cut(s)	1173, 1479
NspI	RCATGY	3 cut(s)	1600, 1630, 1792
PaeI	GCATGC	2 cut(s)	1630, 1792
PaeR7I	CTCGAG	1 cut(s)	1829
PagI	TCATGA	1 cut(s)	732
PaqCI	CACCTGC	1 cut(s)	1333
PauI	GCGCGC	1 cut(s)	1558
PciSI	GCTCTTC	2 cut(s)	1010, 1186
PctI	GAATGC	2 cut(s)	34, 1085
PfeI	GAWTC	4 cut(s)	140, 655, 665, 1732
PflFI	GACNNNGTC	1 cut(s)	100
PflMI	CCANNNNNTGG	1 cut(s)	1292
PleI	GAGTC	2 cut(s)	461, 1840
PpsI	GAGTC	2 cut(s)	461, 1840
PshBI	ATTAAT	1 cut(s)	1505
PsiI	TTATAA	1 cut(s)	560
Psp124BI	GAGCTC	2 cut(s)	1005, 1117
Psp6I	CCWGG	8 cut(s)	1203, 1276, 1285, 1345, 1375, 1387, 1453, 1582
PspFI	CCCAGC	3 cut(s)	169, 1341, 1723
PspGI	CCWGG	8 cut(s)	1203, 1276, 1285, 1345, 1375, 1387, 1453, 1582
PspN4I	GGNNCC	6 cut(s)	82, 1072, 1202, 1242, 1576, 1761
PspPI	GGNCC	8 cut(s)	81, 309, 584, 710, 862, 1283, 1472, 1574
PspXI	VCTCGAGB	1 cut(s)	1829
PsrI	GAACNNNNNNTAC	2 cut(s)	143, 175
PstNI	CAGNNNCTG	1 cut(s)	1475
PsuI	RGATCY	1 cut(s)	118
PsyI	GACNNNGTC	1 cut(s)	100
PteI	GCGCGC	1 cut(s)	1558
PvuII	CAGCTG	4 cut(s)	148, 169, 1756, 1919
RsaI	GTAC	3 cut(s)	152, 326, 1271
RsaNI	GTAC	3 cut(s)	151, 325, 1270
SacI	GAGCTC	2 cut(s)	1005, 1117
SapI	GCTCTTC	2 cut(s)	1010, 1186
SaqAI	TTAA	4 cut(s)	378, 960, 996, 1505
Sau3AI	GATC	9 cut(s)	118, 318, 337, 400, 729, 739, 1639, 1804, 1921
Sau96I	GGNCC	8 cut(s)	81, 309, 584, 710, 862, 1283, 1472, 1574
SchI	GAGTC	2 cut(s)	461, 1841
ScrFI	CCNGG	9 cut(s)	214, 1205, 1278, 1287, 1347, 1377, 1389, 1455, 1584
SduI	GDGCHC	3 cut(s)	1005, 1117, 1687
SfaNI	GCATC	4 cut(s)	250, 784, 1509, 1710
Sfr274I	CTCGAG	1 cut(s)	1829
SinI	GGWCC	4 cut(s)	584, 710, 1283, 1574
SlaI	CTCGAG	1 cut(s)	1829
SmlI	CTYRAG	3 cut(s)	995, 1796, 1829
SmoI	CTYRAG	3 cut(s)	995, 1796, 1829
SphI	GCATGC	2 cut(s)	1630, 1792
SspI	AATATT	1 cut(s)	1305
SspMI	CTAG	5 cut(s)	267, 342, 720, 1680, 1928
SstI	GAGCTC	2 cut(s)	1005, 1117
StyD4I	CCNGG	9 cut(s)	212, 1203, 1276, 1285, 1345, 1375, 1387, 1453, 1582
TaaI	ACNGT	3 cut(s)	335, 1544, 1650
TaiI	ACGT	3 cut(s)	104, 114, 1468
TaqI	TCGA	4 cut(s)	123, 668, 901, 1830
TatI	WGTACW	1 cut(s)	324
TauI	GCSGC	9 cut(s)	41, 44, 47, 50, 53, 65, 68, 1228, 1395
TfiI	GAWTC	4 cut(s)	140, 655, 665, 1732
Tru1I	TTAA	4 cut(s)	378, 960, 996, 1505
Tru9I	TTAA	4 cut(s)	378, 960, 996, 1505
TscAI	CASTG	2 cut(s)	1653, 1749
TseFI	GTSAC	2 cut(s)	94, 1833
Tsp45I	GTSAC	2 cut(s)	94, 1833
TspDTI	ATGAA	5 cut(s)	420, 528, 903, 932, 1142
TspGWI	ACGGA	2 cut(s)	152, 1071
TspRI	CASTG	2 cut(s)	1653, 1749
Tth111I	GACNNNGTC	1 cut(s)	100
Van91I	CCANNNNNTGG	1 cut(s)	1292
Vha464I	CTTAAG	1 cut(s)	995
VpaK11BI	GGWCC	4 cut(s)	584, 710, 1283, 1574
VspI	ATTAAT	1 cut(s)	1505
XapI	RAATTY	5 cut(s)	382, 693, 704, 830, 964
XceI	RCATGY	3 cut(s)	1600, 1630, 1792
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1349
XhoI	CTCGAG	1 cut(s)	1829
XmiI	GTMKAC	1 cut(s)	1539
XspI	CTAG	5 cut(s)	267, 342, 720, 1680, 1928
ZraI	GACGTC	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.