Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003012.1

Orthogroup ID

OG0002657

Physical Location & Seq

Genomic Coordinates Reverse (-)

29840 .. 34099

Gene Structure 4260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003012.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1959 bp

atggcgcaagctcaggttcagggtcagaatgcgagcgcggcggctgcggcggcggcggcggctaatggtggtggggccaaccagttcgtgacgacgtcgctttacgttggggatctcgaccagaacattacggattcgcagctgtacgacctgttcaaccagctgggtcaggtcgtgtctgttagggtttgcagggacttgtccacccggaggtcgcttggttacggctatgtcaattatagcaacccgcaggatgctgctagggcattggatgtgttgaacttcactcctgtaaatggaaggcccattaggatcatgtactctcaccgtgatcctagtatccgtaaaagtgggtctggaaatatatttattaagaatttggacaaagctcttgatcacaaagccttgcatgatacattttcttcattcggaaacatcctttcttgcaaggtggcaacagactcctctggccagtcaaagggctatggctttgtgcaatttgataatgaagaagctgcccaaaaagctattgcaaagttgaatggtatgcttataaatgataagcaagtttttgtaggaccattcctccgcaaacaggaaagggagggtgttgctgacaagtcaaagttccagaatgtttatgtgaagaatctatcagaatcgactactgaagatgattttaccaaaatttttggtgaatttggaccaatcactagtgtagtgatcatgagagatcaagatggaaaatcaaagtgctttggatttgtcaactttgataatccagatgatgctgccagagctgttgaggctctgaatggaaagaaatttgatgataaggagtggtatgttgggaaggcccagaagaaatctgaaagggaaaatgaattgaaacttcgatttgaacagagcatgaaagaggcagcagacaaatatcaaggagcaaacttgtatgttaaaaatttagatgacagcatagttgatgataaacttaaggagctcttcactccatttggcacaattacctcgtgtaaggtcatgcgagaccccaacggagtaagtaggggttccggttttgttgcattctcaactcctgaagaggcaaatagagctctggcggagatgaatggaaaaatgattgtaagcaaacctctctatgttgcacttgcgcaacgaaaagaagatagaagagccaggctccaggctcagttttctcaaatgcggccagttgcaatggcaccttcagttgctcctcgtatgccaatgtaccctcctggtggtccaggtattgggcagcaaatattctatggtcaagccccacctgctatcattccctcccagcctggatttggatatcagcagcagcttgttcctggtatgagacctggcggcgctcccatgccaaacttctttgtgccaatggttcagcaggggcagcaagggcagcgccctggtggcagacgtgcaggccctgcgcagcaaaaccagcaaccagttccattaatgcaacagcagatgcttccaagagggcgtgtctaccgttacccgtctgcgcgcgctctgcctgatggtcccatgcctggtgttggaggcatgttttctgttccatatgacttgtctggcatgccattgcgtgatccagcactgtctcagcctgttccaattgggactttggctagtgcccttgcaaatgctacaccggagcagcaaaggacgatgctgggggagaatctttacccactggtggaacagctggaacctgacaatgcagcgaaggttactggcatgcttcttgagatggatcaaactgaggttctgcatttgctcgagtcacccgaagctttgaaagcaaaggtggctgaagctatggaggttctgaggaatgttgctcagcagcagcaagctggcggtgcagctgatcaactagcctcattgtcgctcaatgataatcttgtttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006412 GO:0006413 GO:0006417 GO:0006446 GO:0006518 GO:0006807 GO:0006950 GO:0006970 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009628 GO:0009651 GO:0009889 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031329 GO:0032268 GO:0034248 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0060211 GO:0060255 GO:0061013 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:1900151 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1903311 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

PABP RRM_1

Protein Analysis

652

Amino Acids

71.07

Weight (kDa)

8.38

Isoelectric Point (pI)

39.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49760 AT1G49760 AT4G34110
fragaria_vesca	FvH4_2g05720 FvH4_2g05720 FvH4_2g05720 FvH4_2g05720 FvH4_2g34040 FvH4_2g34040 FvH4_2g34040 FvH4_6g37220
malus_domestica	MD00G1138300.v1.1 MD05G1085100.v1.1 MD08G1096400.v1.1 MD15G1079100.v1.1
prunus_persica	Prupe.1G432200_v2.0.a1 Prupe.1G432200_v2.0.a1 Prupe.8G129400_v2.0.a1 Prupe.8G129400_v2.0.a1
pyrus_communis	pycom05g08430 pycom08g07840 pycom10g07970 pycom15g07370
rosa_chinensis	RchiOBHm_Chr6g0256591 RchiOBHm_Chr6g0308331
rosa_laevigata	RLG00000010649 RLG00000014752
rosa_multiflora	Rmu_sc0003012.1_g000007
rosa_roxburghii	Rroxscaffold_7G00160250 Rroxscaffold_7G00209190
rosa_rugosa	Rorug05G0564800 Rorug06G0366200 Rorug06G0366200
rosa_samantha	Rh6AG082800 Rh6AG475400 Rh6BG077400 Rh6CG072000 Rh6DG477300
rosa_wichuraiana	Rw6G007450 Rw6G041440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	554
AarI	CACCTGC	1 cut(s)	1327
AatII	GACGTC	1 cut(s)	98
Acc16I	TGCGCA	2 cut(s)	1167, 1473
Acc36I	ACCTGC	1 cut(s)	1327
AccB1I	GGYRCC	1 cut(s)	1234
AccB7I	CCANNNNNTGG	1 cut(s)	1286
AccI	GTMKAC	1 cut(s)	1533
AccII	CGCG	3 cut(s)	38, 1552, 1554
AclWI	GGATC	5 cut(s)	120, 320, 326, 1628, 1806
AcoI	YGGCCR	2 cut(s)	469, 1220
AcsI	RAATTY	5 cut(s)	376, 687, 698, 824, 958
AcuI	CTGAAG	4 cut(s)	690, 1113, 1224, 1878
AcyI	GRCGYC	1 cut(s)	95
AfaI	GTAC	3 cut(s)	146, 320, 1265
AflII	CTTAAG	1 cut(s)	989
AgsI	TTSAA	6 cut(s)	157, 280, 541, 889, 902, 1843
AhlI	ACTAGT	1 cut(s)	713
AjiI	CACGTC	1 cut(s)	1460
AjnI	CCWGG	9 cut(s)	1190, 1197, 1270, 1279, 1339, 1369, 1381, 1447, 1576
Alw21I	GWGCWC	2 cut(s)	999, 1111
Alw26I	GTCTC	3 cut(s)	1035, 1372, 1650
AlwI	GGATC	5 cut(s)	120, 320, 326, 1628, 1806
AlwNI	CAGNNNCTG	1 cut(s)	1469
Ama87I	CYCGRG	1 cut(s)	1823
AoxI	GGCC	6 cut(s)	75, 302, 469, 855, 1220, 1465
ApoI	RAATTY	5 cut(s)	376, 687, 698, 824, 958
AseI	ATTAAT	1 cut(s)	1499
AspLEI	GCGC	9 cut(s)	7, 38, 1168, 1391, 1446, 1474, 1552, 1554, 1556
AspS9I	GGNCC	8 cut(s)	75, 303, 578, 704, 856, 1277, 1466, 1568
AsuC2I	CCSGG	1 cut(s)	208
AsuHPI	GGTGA	3 cut(s)	317, 707, 1821
AvaI	CYCGRG	1 cut(s)	1823
AvaII	GGWCC	4 cut(s)	578, 704, 1277, 1568
BaeGI	GKGCMC	1 cut(s)	1681
BalI	TGGCCA	1 cut(s)	471
BanI	GGYRCC	1 cut(s)	1234
BanII	GRGCYC	2 cut(s)	999, 1111
BauI	CACGAG	1 cut(s)	1024
Bbv12I	GWGCWC	2 cut(s)	999, 1111
BccI	CCATC	3 cut(s)	734, 1559, 1789
BceAI	ACGGC	1 cut(s)	241
BciT130I	CCWGG	9 cut(s)	1192, 1199, 1272, 1281, 1341, 1371, 1383, 1449, 1578
BciVI	GTATCC	1 cut(s)	350
BclI	TGATCA	3 cut(s)	394, 723, 1915
BcnI	CCSGG	1 cut(s)	208
BcoDI	GTCTC	3 cut(s)	1035, 1372, 1650
BcuI	ACTAGT	1 cut(s)	713
BfaI	CTAG	5 cut(s)	261, 336, 714, 1674, 1922
BfoI	RGCGCY	2 cut(s)	1392, 1447
BfrI	CTTAAG	1 cut(s)	989
BfuAI	ACCTGC	1 cut(s)	1327
BfuI	GTATCC	1 cut(s)	350
BglI	GCCNNNNNGGC	1 cut(s)	1452
BlpI	GCTNAGC	1 cut(s)	1887
Bme18I	GGWCC	4 cut(s)	578, 704, 1277, 1568
BmeT110I	CYCGRG	1 cut(s)	1823
BmgBI	CACGTC	1 cut(s)	1460
BmgT120I	GGNCC	8 cut(s)	75, 303, 578, 704, 856, 1277, 1466, 1568
BmiI	GGNNCC	6 cut(s)	76, 1066, 1196, 1236, 1570, 1755
BmsI	GCATC	4 cut(s)	244, 778, 1503, 1704
BplI	GAGNNNNNCTC	2 cut(s)	1179, 1211
BpmI	CTGGAG	1 cut(s)	1181
Bpu10I	CCTNAGC	1 cut(s)	12
Bpu1102I	GCTNAGC	1 cut(s)	1887
BpuEI	CTTGAG	1 cut(s)	1811
BpuMI	CCSGG	1 cut(s)	208
BsaHI	GRCGYC	1 cut(s)	95
BsaI	GGTCTC	2 cut(s)	1035, 1372
BsaJI	CCNNGG	1 cut(s)	1447
BsaWI	WCCGGW	2 cut(s)	1067, 1696
BsaXI	ACNNNNNCTCC	2 cut(s)	570, 600
Bse1I	ACTGG	6 cut(s)	82, 472, 1223, 1490, 1743, 1783
Bse3DI	GCAATG	2 cut(s)	1236, 1625
BseBI	CCWGG	9 cut(s)	1192, 1199, 1272, 1281, 1341, 1371, 1383, 1449, 1578
BseDI	CCNNGG	1 cut(s)	1447
BseGI	GGATG	3 cut(s)	259, 277, 435
BseMI	GCAATG	2 cut(s)	1236, 1625
BseMII	CTCAG	6 cut(s)	26, 1217, 1661, 1797, 1865, 1901
BseNI	ACTGG	6 cut(s)	82, 472, 1223, 1490, 1743, 1783
BsePI	GCGCGC	2 cut(s)	1550, 1552
BseRI	GAGGAG	2 cut(s)	454, 1239
BseSI	GKGCMC	1 cut(s)	1681
BseYI	CCCAGC	3 cut(s)	163, 1335, 1717
BsgI	GTGCAG	2 cut(s)	1482, 1929
Bsh1236I	CGCG	3 cut(s)	38, 1552, 1554
BshFI	GGCC	6 cut(s)	77, 304, 471, 857, 1222, 1467
BshNI	GGYRCC	1 cut(s)	1234
BsiHKAI	GWGCWC	2 cut(s)	999, 1111
BsiHKCI	CYCGRG	1 cut(s)	1823
BsiSI	CCGG	3 cut(s)	208, 1068, 1697
BslFI	GGGAC	3 cut(s)	209, 1554, 1678
BsmAI	GTCTC	3 cut(s)	1035, 1372, 1650
BsmFI	GGGAC	3 cut(s)	209, 1554, 1678
BsmI	GAATGC	2 cut(s)	34, 1079
BsnI	GGCC	6 cut(s)	77, 304, 471, 857, 1222, 1467
Bso31I	GGTCTC	2 cut(s)	1035, 1372
BsoBI	CYCGRG	1 cut(s)	1823
Bsp1286I	GDGCHC	3 cut(s)	999, 1111, 1681
Bsp143I	GATC	9 cut(s)	112, 312, 331, 394, 723, 733, 1633, 1798, 1915
Bsp1720I	GCTNAGC	1 cut(s)	1887
BspANI	GGCC	6 cut(s)	77, 304, 471, 857, 1222, 1467
BspCNI	CTCAG	6 cut(s)	25, 1216, 1660, 1798, 1866, 1900
BspFNI	CGCG	3 cut(s)	38, 1552, 1554
BspHI	TCATGA	1 cut(s)	726
BspLI	GGNNCC	6 cut(s)	76, 1066, 1196, 1236, 1570, 1755
BspMI	ACCTGC	1 cut(s)	1327
BspPI	GGATC	5 cut(s)	120, 320, 326, 1628, 1806
BspQI	GCTCTTC	2 cut(s)	1004, 1180
BspT107I	GGYRCC	1 cut(s)	1234
BspTI	CTTAAG	1 cut(s)	989
BspTNI	GGTCTC	2 cut(s)	1035, 1372
BsrDI	GCAATG	2 cut(s)	1236, 1625
BsrI	ACTGG	6 cut(s)	82, 472, 1223, 1490, 1743, 1783
BssECI	CCNNGG	1 cut(s)	1447
BssHII	GCGCGC	2 cut(s)	1550, 1552
BssMI	GATC	9 cut(s)	112, 312, 331, 394, 723, 733, 1633, 1798, 1915
BssNI	GRCGYC	1 cut(s)	95
BssSI	CACGAG	1 cut(s)	1024
Bst2BI	CACGAG	1 cut(s)	1024
Bst2UI	CCWGG	9 cut(s)	1192, 1199, 1272, 1281, 1341, 1371, 1383, 1449, 1578
Bst4CI	ACNGT	3 cut(s)	329, 1538, 1644
Bst6I	CTCTTC	3 cut(s)	1004, 1089, 1180
BstACI	GRCGYC	1 cut(s)	95
BstAFI	CTTAAG	1 cut(s)	989
BstAPI	GCANNNNNTGC	1 cut(s)	1469
BstC8I	GCNNGC	9 cut(s)	9, 34, 1465, 1552, 1554, 1622, 1784, 1899, 1903
BstDEI	CTNAG	6 cut(s)	12, 1203, 1647, 1806, 1874, 1887
BstF5I	GGATG	3 cut(s)	259, 277, 435
BstFNI	CGCG	3 cut(s)	38, 1552, 1554
BstH2I	RGCGCY	2 cut(s)	1392, 1447
BstHHI	GCGC	9 cut(s)	7, 38, 1168, 1391, 1446, 1474, 1552, 1554, 1556
BstKTI	GATC	9 cut(s)	115, 315, 334, 397, 726, 736, 1636, 1801, 1918
BstMAI	GTCTC	3 cut(s)	1035, 1372, 1650
BstMBI	GATC	9 cut(s)	112, 312, 331, 394, 723, 733, 1633, 1798, 1915
BstNI	CCWGG	9 cut(s)	1192, 1199, 1272, 1281, 1341, 1371, 1383, 1449, 1578
BstNSI	RCATGY	3 cut(s)	1594, 1624, 1786
BstSLI	GKGCMC	1 cut(s)	1681
BstUI	CGCG	3 cut(s)	38, 1552, 1554
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
BsuI	GTATCC	1 cut(s)	350
BsuRI	GGCC	6 cut(s)	77, 304, 471, 857, 1222, 1467
BtrI	CACGTC	1 cut(s)	1460
BtsCI	GGATG	3 cut(s)	259, 277, 435
BtsIMutI	CAGTG	2 cut(s)	1640, 1736
BveI	ACCTGC	1 cut(s)	1327
Cac8I	GCNNGC	9 cut(s)	9, 34, 1465, 1552, 1554, 1622, 1784, 1899, 1903
CaiI	CAGNNNCTG	1 cut(s)	1469
CciI	TCATGA	1 cut(s)	726
CfoI	GCGC	9 cut(s)	7, 38, 1168, 1391, 1446, 1474, 1552, 1554, 1556
Cfr13I	GGNCC	8 cut(s)	75, 303, 578, 704, 856, 1277, 1466, 1568
Csp6I	GTAC	3 cut(s)	145, 319, 1264
CviQI	GTAC	3 cut(s)	145, 319, 1264
DdeI	CTNAG	6 cut(s)	12, 1203, 1647, 1806, 1874, 1887
DpnI	GATC	9 cut(s)	114, 314, 333, 396, 725, 735, 1635, 1800, 1917
DpnII	GATC	9 cut(s)	112, 312, 331, 394, 723, 733, 1633, 1798, 1915
EaeI	YGGCCR	2 cut(s)	469, 1220
Eam1104I	CTCTTC	3 cut(s)	1004, 1089, 1180
EarI	CTCTTC	3 cut(s)	1004, 1089, 1180
EciI	GGCGGA	1 cut(s)	1130
Ecl136II	GAGCTC	2 cut(s)	997, 1109
Eco24I	GRGCYC	2 cut(s)	999, 1111
Eco31I	GGTCTC	2 cut(s)	1035, 1372
Eco32I	GATATC	1 cut(s)	1352
Eco47I	GGWCC	4 cut(s)	578, 704, 1277, 1568
Eco53kI	GAGCTC	2 cut(s)	997, 1109
Eco57I	CTGAAG	4 cut(s)	690, 1113, 1224, 1878
Eco88I	CYCGRG	1 cut(s)	1823
EcoICRI	GAGCTC	2 cut(s)	997, 1109
EcoO109I	RGGNCCY	1 cut(s)	1466
EcoRII	CCWGG	9 cut(s)	1190, 1197, 1270, 1279, 1339, 1369, 1381, 1447, 1576
EcoRV	GATATC	1 cut(s)	1352
EcoT38I	GRGCYC	2 cut(s)	999, 1111
FalI	AAGNNNNNCTT	2 cut(s)	983, 1015
FaqI	GGGAC	3 cut(s)	209, 1554, 1678
FauI	CCCGC	1 cut(s)	255
FauNDI	CATATG	1 cut(s)	1606
FbaI	TGATCA	3 cut(s)	394, 723, 1915
FblI	GTMKAC	1 cut(s)	1533
FokI	GGATG	3 cut(s)	266, 284, 422
FriOI	GRGCYC	2 cut(s)	999, 1111
FspBI	CTAG	5 cut(s)	261, 336, 714, 1674, 1922
FspI	TGCGCA	2 cut(s)	1167, 1473
GlaI	GCGC	9 cut(s)	6, 37, 1167, 1390, 1445, 1473, 1551, 1553, 1555
GsaI	CCCAGC	3 cut(s)	167, 1339, 1721
GsuI	CTGGAG	1 cut(s)	1181
HaeII	RGCGCY	2 cut(s)	1392, 1447
HaeIII	GGCC	6 cut(s)	77, 304, 471, 857, 1222, 1467
HapII	CCGG	3 cut(s)	208, 1068, 1697
HhaI	GCGC	9 cut(s)	7, 38, 1168, 1391, 1446, 1474, 1552, 1554, 1556
Hin1I	GRCGYC	1 cut(s)	95
Hin6I	GCGC	9 cut(s)	5, 36, 1166, 1389, 1444, 1472, 1550, 1552, 1554
HinP1I	GCGC	9 cut(s)	5, 36, 1166, 1389, 1444, 1472, 1550, 1552, 1554
HincII	GTYRAC	1 cut(s)	769
HindII	GTYRAC	1 cut(s)	769
HindIII	AAGCTT	1 cut(s)	1836
HinfI	GANTC	6 cut(s)	134, 461, 649, 659, 1726, 1826
HpaII	CCGG	3 cut(s)	208, 1068, 1697
HphI	GGTGA	3 cut(s)	317, 707, 1821
Hpy166II	GTNNAC	3 cut(s)	204, 769, 1534
Hpy188I	TCNGA	6 cut(s)	27, 431, 658, 813, 871, 1875
Hpy8I	GTNNAC	3 cut(s)	204, 769, 1534
Hpy99I	CGWCG	2 cut(s)	97, 100
HpyAV	CCTTC	4 cut(s)	294, 847, 1248, 1765
HpyCH4III	ACNGT	3 cut(s)	329, 1538, 1644
HpyCH4IV	ACGT	3 cut(s)	95, 105, 1459
HpyF3I	CTNAG	6 cut(s)	12, 1203, 1647, 1806, 1874, 1887
HpySE526I	ACGT	3 cut(s)	95, 105, 1459
Hsp92I	GRCGYC	1 cut(s)	95
HspAI	GCGC	9 cut(s)	5, 36, 1166, 1389, 1444, 1472, 1550, 1552, 1554
Ksp22I	TGATCA	3 cut(s)	394, 723, 1915
Kzo9I	GATC	9 cut(s)	112, 312, 331, 394, 723, 733, 1633, 1798, 1915
LguI	GCTCTTC	2 cut(s)	1004, 1180
LmnI	GCTCC	6 cut(s)	938, 994, 1200, 1252, 1396, 1699
LweI	GCATC	4 cut(s)	244, 778, 1503, 1704
MaeI	CTAG	5 cut(s)	261, 336, 714, 1674, 1922
MaeII	ACGT	3 cut(s)	95, 105, 1459
MaeIII	GTNAC	5 cut(s)	88, 221, 1538, 1774, 1827
MalI	GATC	9 cut(s)	114, 314, 333, 396, 725, 735, 1635, 1800, 1917
MboI	GATC	9 cut(s)	112, 312, 331, 394, 723, 733, 1633, 1798, 1915
MboII	GAAGA	9 cut(s)	414, 521, 658, 683, 874, 991, 1106, 1190, 1197
MfeI	CAATTG	1 cut(s)	1659
MflI	RGATCY	1 cut(s)	112
MhlI	GDGCHC	3 cut(s)	999, 1111, 1681
MlsI	TGGCCA	1 cut(s)	471
MluNI	TGGCCA	1 cut(s)	471
MlyI	GAGTC	2 cut(s)	455, 1835
MmeI	TCCRAC	1 cut(s)	1564
Mox20I	TGGCCA	1 cut(s)	471
MscI	TGGCCA	1 cut(s)	471
MseI	TTAA	4 cut(s)	372, 954, 990, 1499
Msp20I	TGGCCA	1 cut(s)	471
MspA1I	CMGCKG	4 cut(s)	142, 163, 1750, 1913
MspCI	CTTAAG	1 cut(s)	989
MspI	CCGG	3 cut(s)	208, 1068, 1697
MunI	CAATTG	1 cut(s)	1659
Mva1269I	GAATGC	2 cut(s)	34, 1079
MvaI	CCWGG	9 cut(s)	1192, 1199, 1272, 1281, 1341, 1371, 1383, 1449, 1578
MvnI	CGCG	3 cut(s)	38, 1552, 1554
NciI	CCSGG	1 cut(s)	208
NdeI	CATATG	1 cut(s)	1606
NdeII	GATC	9 cut(s)	112, 312, 331, 394, 723, 733, 1633, 1798, 1915
NlaIV	GGNNCC	6 cut(s)	76, 1066, 1196, 1236, 1570, 1755
NmuCI	GTSAC	2 cut(s)	88, 1827
NsbI	TGCGCA	2 cut(s)	1167, 1473
NspI	RCATGY	3 cut(s)	1594, 1624, 1786
PaeI	GCATGC	2 cut(s)	1624, 1786
PaeR7I	CTCGAG	1 cut(s)	1823
PagI	TCATGA	1 cut(s)	726
PaqCI	CACCTGC	1 cut(s)	1327
PauI	GCGCGC	2 cut(s)	1550, 1552
PciSI	GCTCTTC	2 cut(s)	1004, 1180
PcsI	WCGNNNNNNNCGW	1 cut(s)	1830
PctI	GAATGC	2 cut(s)	34, 1079
PfeI	GAWTC	4 cut(s)	134, 649, 659, 1726
PflFI	GACNNNGTC	1 cut(s)	94
PflMI	CCANNNNNTGG	1 cut(s)	1286
PleI	GAGTC	2 cut(s)	455, 1834
PpsI	GAGTC	2 cut(s)	455, 1834
PshBI	ATTAAT	1 cut(s)	1499
PsiI	TTATAA	1 cut(s)	554
Psp124BI	GAGCTC	2 cut(s)	999, 1111
Psp6I	CCWGG	9 cut(s)	1190, 1197, 1270, 1279, 1339, 1369, 1381, 1447, 1576
PspFI	CCCAGC	3 cut(s)	163, 1335, 1717
PspGI	CCWGG	9 cut(s)	1190, 1197, 1270, 1279, 1339, 1369, 1381, 1447, 1576
PspN4I	GGNNCC	6 cut(s)	76, 1066, 1196, 1236, 1570, 1755
PspPI	GGNCC	8 cut(s)	75, 303, 578, 704, 856, 1277, 1466, 1568
PspXI	VCTCGAGB	1 cut(s)	1823
PsrI	GAACNNNNNNTAC	2 cut(s)	137, 169
PstNI	CAGNNNCTG	1 cut(s)	1469
PsuI	RGATCY	1 cut(s)	112
PsyI	GACNNNGTC	1 cut(s)	94
PteI	GCGCGC	2 cut(s)	1550, 1552
PvuII	CAGCTG	4 cut(s)	142, 163, 1750, 1913
RsaI	GTAC	3 cut(s)	146, 320, 1265
RsaNI	GTAC	3 cut(s)	145, 319, 1264
SacI	GAGCTC	2 cut(s)	999, 1111
SapI	GCTCTTC	2 cut(s)	1004, 1180
SaqAI	TTAA	4 cut(s)	372, 954, 990, 1499
Sau3AI	GATC	9 cut(s)	112, 312, 331, 394, 723, 733, 1633, 1798, 1915
Sau96I	GGNCC	8 cut(s)	75, 303, 578, 704, 856, 1277, 1466, 1568
SchI	GAGTC	2 cut(s)	455, 1835
SduI	GDGCHC	3 cut(s)	999, 1111, 1681
SfaNI	GCATC	4 cut(s)	244, 778, 1503, 1704
Sfr274I	CTCGAG	1 cut(s)	1823
SinI	GGWCC	4 cut(s)	578, 704, 1277, 1568
SlaI	CTCGAG	1 cut(s)	1823
SmlI	CTYRAG	3 cut(s)	989, 1790, 1823
SmoI	CTYRAG	3 cut(s)	989, 1790, 1823
SpeI	ACTAGT	1 cut(s)	713
SphI	GCATGC	2 cut(s)	1624, 1786
SspI	AATATT	1 cut(s)	1299
SspMI	CTAG	5 cut(s)	261, 336, 714, 1674, 1922
SstI	GAGCTC	2 cut(s)	999, 1111
TaaI	ACNGT	3 cut(s)	329, 1538, 1644
TaiI	ACGT	3 cut(s)	98, 108, 1462
TaqI	TCGA	4 cut(s)	117, 662, 895, 1824
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	9 cut(s)	41, 44, 50, 53, 56, 59, 62, 1222, 1389
TfiI	GAWTC	4 cut(s)	134, 649, 659, 1726
Tru1I	TTAA	4 cut(s)	372, 954, 990, 1499
Tru9I	TTAA	4 cut(s)	372, 954, 990, 1499
TscAI	CASTG	2 cut(s)	1647, 1743
TseFI	GTSAC	2 cut(s)	88, 1827
Tsp45I	GTSAC	2 cut(s)	88, 1827
TspDTI	ATGAA	5 cut(s)	414, 522, 897, 926, 1136
TspGWI	ACGGA	3 cut(s)	146, 332, 1065
TspRI	CASTG	2 cut(s)	1647, 1743
Tth111I	GACNNNGTC	1 cut(s)	94
Van91I	CCANNNNNTGG	1 cut(s)	1286
Vha464I	CTTAAG	1 cut(s)	989
VpaK11BI	GGWCC	4 cut(s)	578, 704, 1277, 1568
VspI	ATTAAT	1 cut(s)	1499
XapI	RAATTY	5 cut(s)	376, 687, 698, 824, 958
XceI	RCATGY	3 cut(s)	1594, 1624, 1786
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1343
XhoI	CTCGAG	1 cut(s)	1823
XmiI	GTMKAC	1 cut(s)	1533
XspI	CTAG	5 cut(s)	261, 336, 714, 1674, 1922
ZraI	GACGTC	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.